Wall clock time and date at job start Mon Mar 30 2020 04:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35998 * 116.99860 * 2 1 4 4 C 1.38566 * 120.07272 * 359.97438 * 3 2 1 5 5 C 1.38234 * 119.99993 * 180.02562 * 4 3 2 6 6 C 1.38256 * 120.14940 * 0.02562 * 5 4 3 7 7 C 1.38245 * 120.14249 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99818 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.47033 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46959 * 300.00089 * 8 7 6 11 11 C 1.52999 * 109.47091 * 59.99761 * 8 7 6 12 12 H 1.08998 * 109.47610 * 300.00170 * 11 8 7 13 13 N 1.46899 * 109.47071 * 60.00094 * 11 8 7 14 14 C 1.50701 * 109.47091 * 179.97438 * 11 8 7 15 15 H 1.08000 * 120.00113 * 359.97438 * 14 11 8 16 16 C 1.37881 * 119.99844 * 180.02562 * 14 11 8 17 17 N 1.31514 * 120.00112 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99687 * 179.97438 * 16 14 11 19 19 H 1.48504 * 109.47160 * 90.00119 * 18 16 14 20 20 H 1.48499 * 109.47270 * 209.99856 * 18 16 14 21 21 H 1.48495 * 109.47251 * 330.00125 * 18 16 14 22 22 C 1.38561 * 120.00240 * 0.02562 * 7 6 5 23 23 O 1.35987 * 120.07453 * 180.02562 * 22 7 6 24 24 H 1.08990 * 109.47690 * 60.00392 * 1 2 3 25 25 H 1.09000 * 109.46784 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47483 * 299.99541 * 1 2 3 27 27 H 1.08006 * 119.99637 * 0.02562 * 4 3 2 28 28 H 1.08008 * 119.92628 * 179.97438 * 5 4 3 29 29 H 1.07998 * 119.92916 * 180.27532 * 6 5 4 30 30 H 1.09005 * 109.47194 * 299.99852 * 10 8 7 31 31 H 1.08998 * 109.47547 * 59.99955 * 10 8 7 32 32 H 1.09005 * 109.47069 * 179.97438 * 10 8 7 33 33 H 1.00902 * 110.99918 * 59.99887 * 13 11 8 34 34 H 1.00898 * 111.00192 * 183.95165 * 13 11 8 35 35 H 0.96994 * 119.99905 * 180.02562 * 17 16 14 36 36 H 0.96699 * 114.00742 * 89.99657 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2931 2.3748 -0.0005 5 6 1.9222 3.6057 -0.0011 6 6 3.3028 3.6800 -0.0016 7 6 4.0602 2.5234 -0.0011 8 6 5.5648 2.6081 -0.0022 9 1 5.9853 1.6025 -0.0021 10 6 6.0325 3.3558 -1.2525 11 6 6.0343 3.3581 1.2459 12 1 5.6138 4.3637 1.2453 13 7 5.5852 2.6404 2.4464 14 6 7.5390 3.4423 1.2451 15 1 8.1039 3.0043 0.4355 16 6 8.1945 4.0776 2.2784 17 7 7.5067 4.6097 3.2650 18 14 10.0596 4.1813 2.2777 19 1 10.4863 5.4188 1.5764 20 1 10.5544 4.2100 3.6775 21 1 10.6209 2.9976 1.5785 22 6 3.4359 1.2864 -0.0005 23 8 4.1795 0.1479 0.0005 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 0.2144 2.3196 -0.0005 28 1 1.3339 4.5115 -0.0019 29 1 3.7906 4.6435 0.0025 30 1 5.6980 2.8215 -2.1418 31 1 5.6120 4.3614 -1.2532 32 1 7.1208 3.4175 -1.2532 33 1 5.9620 1.7046 2.4703 34 1 5.8271 3.1490 3.2835 35 1 7.9678 5.0569 3.9918 36 1 4.3943 -0.1809 0.8842 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260118613.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:11 Heat of formation + Delta-G solvation = -88.612703 kcal Electronic energy + Delta-G solvation = -18835.131932 eV Core-core repulsion = 15897.434815 eV Total energy + Delta-G solvation = -2937.697117 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.35453 -39.20215 -37.58428 -36.88714 -34.28230 -32.12230 -30.52321 -30.01805 -28.04562 -27.49542 -25.11443 -23.41497 -23.03948 -20.70565 -19.36867 -18.56793 -18.07419 -17.28016 -16.83866 -16.60754 -16.13682 -15.93391 -15.32185 -15.04718 -14.93006 -14.57496 -14.38423 -13.64372 -13.15522 -13.14221 -13.02672 -12.92622 -12.66486 -12.52579 -12.24976 -12.19603 -11.99751 -11.83077 -11.65007 -11.18081 -11.06292 -10.57972 -9.38024 -9.08667 -8.96602 -8.05380 -6.28630 0.43235 0.56225 1.38335 1.41168 1.49729 2.38682 2.42820 2.79869 3.12563 3.48925 3.94605 4.07258 4.26025 4.36948 4.44456 4.45001 4.50022 4.56271 4.66328 4.75651 4.86982 4.94757 5.10319 5.18822 5.28913 5.39465 5.40298 5.50723 5.67879 5.74099 5.86906 5.95740 6.20484 6.41807 6.74960 6.97127 7.04698 7.20139 7.47079 8.89003 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.037470 B = 0.005617 C = 0.005524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.084684 B = 4983.891544 C = 5067.437792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.091 3.909 4 C -0.207 4.207 5 C -0.085 4.085 6 C -0.150 4.150 7 C -0.032 4.032 8 C -0.037 4.037 9 H 0.061 0.939 10 C -0.124 4.124 11 C 0.230 3.770 12 H 0.006 0.994 13 N -0.840 5.840 14 C -0.558 4.558 15 H 0.052 0.948 16 C 0.021 3.979 17 N -0.918 5.918 18 Si 0.951 3.049 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.272 1.272 22 C 0.052 3.948 23 O -0.497 6.497 24 H 0.065 0.935 25 H 0.117 0.883 26 H 0.064 0.936 27 H 0.158 0.842 28 H 0.151 0.849 29 H 0.115 0.885 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.312 0.688 34 H 0.340 0.660 35 H 0.264 0.736 36 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.884 -5.175 -5.471 14.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.046 3.954 4 C -0.226 4.226 5 C -0.103 4.103 6 C -0.169 4.169 7 C -0.032 4.032 8 C -0.056 4.056 9 H 0.079 0.921 10 C -0.181 4.181 11 C 0.120 3.880 12 H 0.024 0.976 13 N -0.367 5.367 14 C -0.598 4.598 15 H 0.070 0.930 16 C -0.179 4.179 17 N -0.558 5.558 18 Si 0.778 3.222 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.197 1.197 22 C 0.007 3.993 23 O -0.307 6.307 24 H 0.084 0.916 25 H 0.136 0.864 26 H 0.082 0.918 27 H 0.175 0.825 28 H 0.169 0.831 29 H 0.133 0.867 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.121 0.879 34 H 0.154 0.846 35 H 0.073 0.927 36 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -13.578 -5.115 -6.215 15.784 hybrid contribution 2.158 0.306 1.099 2.441 sum -11.420 -4.809 -5.116 13.406 Atomic orbital electron populations 1.23342 0.76697 1.05404 1.02239 1.86095 1.23266 1.26324 1.88891 1.19496 0.91366 0.85650 0.98929 1.21302 1.00921 0.91106 1.09234 1.21179 0.93753 0.98188 0.97211 1.20915 0.94430 0.97620 1.03918 1.20030 0.96216 0.91809 0.95170 1.20028 0.89565 0.99719 0.96297 0.92084 1.21631 1.01235 0.99490 0.95782 1.18771 0.90815 0.91623 0.86790 0.97612 1.59453 1.64875 1.05493 1.06918 1.22279 0.94501 1.36015 1.06981 0.92972 1.25683 1.02190 0.94608 0.95392 1.69852 1.36706 1.38089 1.11193 0.85669 0.81172 0.78369 0.77030 1.20442 1.21110 1.19667 1.17691 0.86696 0.86252 1.08688 1.84758 1.72185 1.39650 1.34123 0.91642 0.86438 0.91755 0.82501 0.83109 0.86655 0.92887 0.93085 0.92635 0.87937 0.84582 0.92716 0.75216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.42 16 2 O -0.33 -9.58 10.28 -79.67 -0.82 -10.40 16 3 C 0.09 2.93 6.70 22.57 0.15 3.09 16 4 C -0.21 -5.62 9.04 22.35 0.20 -5.42 16 5 C -0.09 -2.45 10.04 22.27 0.22 -2.23 16 6 C -0.15 -5.36 8.71 22.28 0.19 -5.16 16 7 C -0.03 -1.22 4.39 -19.79 -0.09 -1.31 16 8 C -0.04 -1.56 2.23 -11.54 -0.03 -1.59 16 9 H 0.06 2.67 6.99 -2.39 -0.02 2.66 16 10 C -0.12 -4.82 8.75 71.98 0.63 -4.19 16 11 C 0.23 11.26 2.12 44.17 0.09 11.36 16 12 H 0.01 0.32 7.38 -2.39 -0.02 0.31 16 13 N -0.84 -39.73 8.77 -171.80 -1.51 -41.24 16 14 C -0.56 -29.54 7.99 25.60 0.20 -29.34 16 15 H 0.05 2.76 6.71 -2.91 -0.02 2.74 16 16 C 0.02 1.11 5.38 84.66 0.46 1.57 16 17 N -0.92 -50.92 11.54 21.45 0.25 -50.67 16 18 Si 0.95 42.84 29.54 68.60 2.03 44.87 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 C 0.05 1.91 6.69 22.57 0.15 2.06 16 23 O -0.50 -17.84 12.05 -79.54 -0.96 -18.80 16 24 H 0.06 0.97 7.66 -2.39 -0.02 0.95 16 25 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.06 0.98 7.66 -2.39 -0.02 0.96 16 27 H 0.16 3.06 6.30 -2.91 -0.02 3.04 16 28 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 29 H 0.12 4.22 7.10 -2.91 -0.02 4.20 16 30 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.05 1.92 7.39 -2.39 -0.02 1.90 16 32 H 0.05 2.25 6.62 -2.38 -0.02 2.23 16 33 H 0.31 14.10 8.99 -89.69 -0.81 13.29 16 34 H 0.34 17.59 7.07 -89.70 -0.63 16.96 16 35 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 36 H 0.39 11.70 9.06 -74.06 -0.67 11.03 16 Total: -1.00 -62.22 296.95 1.31 -60.91 By element: Atomic # 1 Polarization: 46.06 SS G_CDS: -0.99 Total: 45.08 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: 3.31 Total: -29.75 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -1.26 Total: -91.91 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -1.78 Total: -29.20 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -62.22 1.31 -60.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260118613.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.703 kcal (2) G-P(sol) polarization free energy of solvation -62.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds