Wall clock time and date at job start Mon Mar 30 2020 04:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36001 * 117.00212 * 2 1 4 4 C 1.38563 * 120.06881 * 359.97438 * 3 2 1 5 5 C 1.38234 * 120.00183 * 180.02562 * 4 3 2 6 6 C 1.38253 * 120.14308 * 359.72307 * 5 4 3 7 7 C 1.38245 * 120.14957 * 0.55420 * 6 5 4 8 8 C 1.50700 * 120.00386 * 179.71850 * 7 6 5 9 9 H 1.08997 * 109.46684 * 179.72690 * 8 7 6 10 10 C 1.53002 * 109.46907 * 59.72718 * 8 7 6 11 11 C 1.52998 * 109.46967 * 299.72826 * 8 7 6 12 12 H 1.08992 * 109.47074 * 60.00368 * 11 8 7 13 13 N 1.46898 * 109.47126 * 299.99887 * 11 8 7 14 14 C 1.50706 * 109.46490 * 179.97438 * 11 8 7 15 15 H 1.07997 * 120.00492 * 5.42076 * 14 11 8 16 16 C 1.37875 * 119.99602 * 185.42246 * 14 11 8 17 17 N 1.31517 * 120.00213 * 9.29735 * 16 14 11 18 18 Si 1.86797 * 120.00172 * 189.29807 * 16 14 11 19 19 H 1.48500 * 109.47436 * 84.99016 * 18 16 14 20 20 H 1.48497 * 109.47622 * 204.99273 * 18 16 14 21 21 H 1.48498 * 109.46968 * 324.99204 * 18 16 14 22 22 C 1.38566 * 119.99217 * 359.44713 * 7 6 5 23 23 O 1.35993 * 120.07292 * 180.30023 * 22 7 6 24 24 H 1.08995 * 109.47428 * 60.00224 * 1 2 3 25 25 H 1.09004 * 109.46743 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47493 * 299.99754 * 1 2 3 27 27 H 1.08010 * 119.99751 * 0.04323 * 4 3 2 28 28 H 1.08001 * 119.93455 * 180.02562 * 5 4 3 29 29 H 1.08003 * 119.92822 * 180.29618 * 6 5 4 30 30 H 1.08994 * 109.47213 * 300.00250 * 10 8 7 31 31 H 1.08999 * 109.46919 * 60.00163 * 10 8 7 32 32 H 1.08997 * 109.46813 * 179.97438 * 10 8 7 33 33 H 1.00902 * 111.00068 * 178.73928 * 13 11 8 34 34 H 1.00903 * 110.99999 * 302.68795 * 13 11 8 35 35 H 0.96999 * 120.00254 * 180.02562 * 17 16 14 36 36 H 0.96699 * 114.00735 * 89.99498 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9223 3.6057 -0.0011 6 6 3.3028 3.6798 0.0047 7 6 4.0603 2.5234 -0.0005 8 6 5.5649 2.6081 -0.0006 9 1 5.9853 1.6025 -0.0002 10 6 6.0335 3.3574 1.2483 11 6 6.0335 3.3563 -1.2502 12 1 5.6130 4.3619 -1.2505 13 7 5.5834 2.6369 -2.4493 14 6 7.5381 3.4415 -1.2498 15 1 8.1077 2.9313 -0.4873 16 6 8.1874 4.1709 -2.2231 17 7 7.4985 4.9385 -3.0391 18 14 10.0458 4.0690 -2.3829 19 1 10.4071 2.8973 -3.2206 20 1 10.5567 5.3093 -3.0199 21 1 10.6509 3.9193 -1.0351 22 6 3.4359 1.2864 0.0000 23 8 4.1795 0.1477 0.0010 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.2145 2.3195 -0.0002 28 1 1.3341 4.5115 -0.0011 29 1 3.7906 4.6434 0.0091 30 1 5.6130 4.3630 1.2479 31 1 5.6997 2.8243 2.1385 32 1 7.1218 3.4183 1.2485 33 1 5.8630 3.1224 -3.2885 34 1 5.9244 1.6872 -2.4504 35 1 7.9552 5.4514 -3.7241 36 1 4.3943 -0.1811 0.8847 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260118621.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:15 Heat of formation + Delta-G solvation = -66.932774 kcal Electronic energy + Delta-G solvation = -18816.260321 eV Core-core repulsion = 15879.503316 eV Total energy + Delta-G solvation = -2936.757005 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.10785 -37.92839 -36.19631 -35.28738 -32.40236 -30.35766 -29.34332 -28.58701 -27.06480 -25.47689 -23.52115 -22.08640 -21.51077 -19.19600 -18.01778 -16.90614 -16.62110 -15.91775 -15.67037 -14.97931 -14.70209 -14.22289 -13.87872 -13.78419 -13.36844 -13.02750 -12.61313 -12.15188 -12.06665 -11.75815 -11.36799 -11.24968 -11.08660 -10.92167 -10.88626 -10.64977 -10.41751 -10.20786 -10.09210 -9.57707 -9.28082 -8.46517 -8.01482 -7.71563 -7.06264 -6.01695 -4.13530 1.71652 1.85687 3.26787 3.34151 3.36232 3.45108 4.11678 4.39130 4.64990 5.02348 5.16860 5.22189 5.23555 5.38538 5.46430 5.67071 5.79210 5.83780 6.01840 6.14854 6.34780 6.45386 6.55962 6.71364 6.75510 6.84432 7.00049 7.12819 7.13618 7.23371 7.54115 7.79474 7.83979 8.20441 8.25329 8.81257 9.00693 9.20116 9.54529 10.98348 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.037210 B = 0.005637 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.308648 B = 4966.373725 C = 5090.297252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.095 3.905 4 C -0.216 4.216 5 C -0.091 4.091 6 C -0.131 4.131 7 C -0.013 4.013 8 C -0.047 4.047 9 H 0.071 0.929 10 C -0.129 4.129 11 C 0.224 3.776 12 H 0.044 0.956 13 N -0.848 5.848 14 C -0.549 4.549 15 H 0.055 0.945 16 C 0.068 3.932 17 N -0.889 5.889 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.275 1.275 22 C 0.072 3.928 23 O -0.479 6.479 24 H 0.052 0.948 25 H 0.094 0.906 26 H 0.050 0.950 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.126 0.874 30 H 0.049 0.951 31 H 0.033 0.967 32 H 0.068 0.932 33 H 0.341 0.659 34 H 0.312 0.688 35 H 0.262 0.738 36 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.483 -5.437 7.802 14.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.050 3.950 4 C -0.235 4.235 5 C -0.109 4.109 6 C -0.149 4.149 7 C -0.014 4.014 8 C -0.066 4.066 9 H 0.090 0.910 10 C -0.187 4.187 11 C 0.114 3.886 12 H 0.062 0.938 13 N -0.375 5.375 14 C -0.589 4.589 15 H 0.073 0.927 16 C -0.135 4.135 17 N -0.527 5.527 18 Si 0.716 3.284 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.200 1.200 22 C 0.027 3.973 23 O -0.286 6.286 24 H 0.071 0.929 25 H 0.112 0.888 26 H 0.069 0.931 27 H 0.139 0.861 28 H 0.137 0.863 29 H 0.143 0.857 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.154 0.846 34 H 0.121 0.879 35 H 0.072 0.928 36 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -12.177 -5.300 7.312 15.160 hybrid contribution 1.830 0.056 -0.019 1.831 sum -10.347 -5.244 7.293 13.702 Atomic orbital electron populations 1.22972 0.79408 1.03277 1.01015 1.86116 1.20468 1.26906 1.89170 1.19391 0.91708 0.84385 0.99509 1.20912 0.99196 0.92156 1.11211 1.20841 0.94695 0.96528 0.98831 1.20863 0.93034 0.98498 1.02492 1.20182 0.97312 0.90763 0.93125 1.20266 0.87848 1.00857 0.97586 0.91040 1.21707 1.02319 0.99400 0.95270 1.18913 0.92058 0.92733 0.84866 0.93814 1.59418 1.66117 1.05226 1.06716 1.21925 0.93099 1.31438 1.12420 0.92669 1.24999 0.98090 0.94316 0.96116 1.69923 1.35645 1.27223 1.19922 0.86690 0.86081 0.77381 0.78281 1.20665 1.21365 1.20012 1.17531 0.85541 0.86434 1.07805 1.84934 1.71945 1.39665 1.32096 0.92923 0.88760 0.93117 0.86075 0.86291 0.85652 0.93175 0.94834 0.91322 0.84600 0.87879 0.92793 0.77251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.31 -4.83 10.28 -34.25 -0.35 -5.18 16 3 C 0.10 1.61 6.70 -39.12 -0.26 1.35 16 4 C -0.22 -3.25 9.04 -39.46 -0.36 -3.61 16 5 C -0.09 -1.41 10.04 -39.58 -0.40 -1.81 16 6 C -0.13 -2.35 8.71 -39.57 -0.34 -2.70 16 7 C -0.01 -0.25 4.39 -104.50 -0.46 -0.71 16 8 C -0.05 -0.96 2.20 -91.77 -0.20 -1.16 16 9 H 0.07 1.51 6.99 -51.93 -0.36 1.15 16 10 C -0.13 -2.40 8.75 37.16 0.33 -2.08 16 11 C 0.22 5.48 2.00 -68.86 -0.14 5.34 16 12 H 0.04 1.19 7.35 -51.93 -0.38 0.81 16 13 N -0.85 -20.74 8.81 -5.66 -0.05 -20.79 16 14 C -0.55 -14.53 7.85 -34.44 -0.27 -14.80 16 15 H 0.06 1.45 6.94 -52.49 -0.36 1.09 16 16 C 0.07 1.83 5.26 -17.82 -0.09 1.73 16 17 N -0.89 -24.98 12.28 55.43 0.68 -24.30 16 18 Si 0.89 21.02 29.55 -169.99 -5.02 15.99 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.07 1.33 6.69 -39.12 -0.26 1.07 16 23 O -0.48 -8.44 12.05 -34.22 -0.41 -8.85 16 24 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 25 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 27 H 0.12 1.46 6.30 -52.48 -0.33 1.13 16 28 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.13 2.27 7.10 -52.48 -0.37 1.90 16 30 H 0.05 0.91 7.37 -51.93 -0.38 0.53 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 1.35 6.73 -51.93 -0.35 1.00 16 33 H 0.34 8.92 7.81 -39.29 -0.31 8.61 16 34 H 0.31 7.50 8.99 -39.29 -0.35 7.15 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.37 4.81 9.06 45.56 0.41 5.22 16 LS Contribution 298.35 15.07 4.50 4.50 Total: -1.00 -30.27 298.35 -6.12 -36.39 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -3.99 Total: 18.33 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -1.47 Total: -16.09 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.63 Total: -45.09 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.76 Total: -14.03 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.27 -6.12 -36.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260118621.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.547 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds