Wall clock time and date at job start Mon Mar 30 2020 03:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34520 * 125.78591 * 2 1 4 4 C 1.41379 * 106.84039 * 179.97438 * 3 2 1 5 5 C 1.34512 * 106.84197 * 359.97438 * 4 3 2 6 6 C 1.50702 * 125.79283 * 180.02562 * 5 4 3 7 7 N 1.46896 * 109.47250 * 89.99992 * 6 5 4 8 8 C 1.47008 * 110.99937 * 46.36629 * 7 6 5 9 9 C 1.53098 * 109.25848 * 182.39353 * 8 7 6 10 10 O 1.43020 * 109.26145 * 303.15232 * 9 8 7 11 11 C 1.43009 * 113.73553 * 58.66626 * 10 9 8 12 12 C 1.47016 * 111.00132 * 170.00354 * 7 6 5 13 13 H 1.09002 * 109.50622 * 297.54069 * 12 7 6 14 14 C 1.50700 * 109.54152 * 57.65077 * 12 7 6 15 15 H 1.08002 * 120.00088 * 359.89270 * 14 12 7 16 16 C 1.37880 * 120.00024 * 179.89260 * 14 12 7 17 17 N 1.31515 * 119.99486 * 0.02562 * 16 14 12 18 18 Si 1.86789 * 120.00343 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47191 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47513 * 119.99909 * 18 16 14 21 21 H 1.48498 * 109.47297 * 240.00103 * 18 16 14 22 22 O 1.34306 * 125.79369 * 180.27142 * 2 1 3 23 23 H 1.08999 * 109.47462 * 89.99947 * 1 2 3 24 24 H 1.09005 * 109.46584 * 209.99823 * 1 2 3 25 25 H 1.08993 * 109.47540 * 329.99466 * 1 2 3 26 26 H 1.08003 * 126.57793 * 359.94516 * 3 2 1 27 27 H 1.08003 * 126.58053 * 179.97438 * 4 3 2 28 28 H 1.09001 * 109.46684 * 329.99731 * 6 5 4 29 29 H 1.09002 * 109.47244 * 210.00475 * 6 5 4 30 30 H 1.09000 * 109.50968 * 62.46206 * 8 7 6 31 31 H 1.09000 * 109.54469 * 302.34912 * 8 7 6 32 32 H 1.09004 * 109.51019 * 183.21742 * 9 8 7 33 33 H 1.09000 * 109.54300 * 63.10568 * 9 8 7 34 34 H 1.09005 * 109.50877 * 181.40029 * 11 10 9 35 35 H 1.09007 * 109.50731 * 61.27071 * 11 10 9 36 36 H 0.97001 * 119.99617 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6322 0.0006 5 6 3.5814 -0.7120 0.0015 6 6 4.7706 -1.6377 0.0030 7 7 5.1561 -1.9375 1.3884 8 6 3.9794 -2.2802 2.2002 9 6 4.4179 -2.5262 3.6463 10 8 5.4104 -3.5557 3.6697 11 6 6.5706 -3.2547 2.8897 12 6 6.1540 -3.0161 1.4359 13 1 5.7225 -3.9294 1.0264 14 6 7.3613 -2.6220 0.6246 15 1 7.3855 -1.6666 0.1216 16 6 8.4349 -3.4813 0.5244 17 7 8.4052 -4.6449 1.1366 18 14 9.9311 -2.9933 -0.4818 19 1 9.7159 -1.6455 -1.0670 20 1 11.1299 -2.9674 0.3943 21 1 10.1367 -3.9791 -1.5731 22 8 2.2925 -1.0894 -0.0052 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3634 0.8899 0.5139 26 1 1.9664 2.1205 -0.0008 27 1 4.5211 1.2436 0.0004 28 1 5.6043 -1.1588 -0.5107 29 1 4.5111 -2.5635 -0.5105 30 1 3.5132 -3.1818 1.8029 31 1 3.2646 -1.4578 2.1716 32 1 3.5578 -2.8363 4.2397 33 1 4.8353 -1.6090 4.0618 34 1 7.2675 -4.0916 2.9358 35 1 7.0508 -2.3584 3.2825 36 1 9.1606 -5.2492 1.0665 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260182528.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:46 Heat of formation + Delta-G solvation = -43.806551 kcal Electronic energy + Delta-G solvation = -18969.404319 eV Core-core repulsion = 16033.650143 eV Total energy + Delta-G solvation = -2935.754177 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.56407 -40.35040 -36.90802 -35.13783 -34.07900 -32.92211 -31.72879 -30.05755 -27.52876 -26.79920 -24.29823 -24.13992 -22.64544 -21.18246 -20.93811 -18.72599 -17.69512 -17.56885 -16.91910 -16.73130 -16.29897 -15.78940 -15.68389 -15.37237 -14.75053 -14.67834 -14.12470 -14.00620 -13.69735 -13.64438 -13.50297 -13.03733 -12.88898 -12.70429 -12.55794 -12.42826 -12.23969 -12.10502 -11.62571 -11.09519 -10.81374 -10.72116 -10.32589 -9.34931 -9.06451 -8.20752 -6.33612 0.74635 1.42838 1.44887 1.56871 1.69986 1.98258 2.38982 3.02665 3.10606 3.29507 3.70522 4.00949 4.07317 4.18395 4.24542 4.32214 4.38300 4.55102 4.59321 4.63497 4.74288 4.75815 4.83038 4.86721 4.93076 4.94497 5.16550 5.22466 5.30234 5.43838 5.61721 5.69813 5.87906 6.13311 6.26347 6.33453 6.53982 6.78988 7.36520 8.87433 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.025041 B = 0.006647 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.906676 B = 4211.534730 C = 5033.533082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.027 4.027 3 C -0.218 4.218 4 C -0.195 4.195 5 C -0.027 4.027 6 C 0.151 3.849 7 N -0.530 5.530 8 C 0.027 3.973 9 C 0.064 3.936 10 O -0.417 6.417 11 C 0.082 3.918 12 C 0.195 3.805 13 H -0.032 1.032 14 C -0.525 4.525 15 H 0.069 0.931 16 C 0.015 3.985 17 N -0.921 5.921 18 Si 0.969 3.031 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.281 1.281 22 O -0.197 6.197 23 H 0.093 0.907 24 H 0.077 0.923 25 H 0.111 0.889 26 H 0.174 0.826 27 H 0.153 0.847 28 H 0.105 0.895 29 H 0.024 0.976 30 H 0.016 0.984 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.057 0.943 34 H 0.099 0.901 35 H 0.033 0.967 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.805 10.038 -1.016 16.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.077 4.077 3 C -0.236 4.236 4 C -0.215 4.215 5 C -0.076 4.076 6 C 0.024 3.976 7 N -0.255 5.255 8 C -0.102 4.102 9 C -0.013 4.013 10 O -0.337 6.337 11 C 0.006 3.994 12 C 0.088 3.912 13 H -0.015 1.015 14 C -0.563 4.563 15 H 0.087 0.913 16 C -0.184 4.184 17 N -0.560 5.560 18 Si 0.794 3.206 19 H -0.188 1.188 20 H -0.204 1.204 21 H -0.207 1.207 22 O -0.095 6.095 23 H 0.112 0.888 24 H 0.096 0.904 25 H 0.130 0.870 26 H 0.191 0.809 27 H 0.171 0.829 28 H 0.123 0.877 29 H 0.042 0.958 30 H 0.034 0.966 31 H 0.103 0.897 32 H 0.135 0.865 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.051 0.949 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.603 9.822 -0.687 15.993 hybrid contribution 0.822 -0.617 -1.009 1.441 sum -11.781 9.205 -1.696 15.047 Atomic orbital electron populations 1.20479 0.82237 1.05199 1.04627 1.23316 0.95663 0.83728 1.05000 1.21859 0.91678 1.00538 1.09574 1.21787 0.99380 0.93328 1.07051 1.22281 0.82431 0.95189 1.07727 1.20349 0.91026 0.95278 0.90948 1.62493 1.10946 1.42604 1.09492 1.22716 0.93062 0.98951 0.95453 1.22749 0.92142 0.91537 0.94883 1.87870 1.30205 1.44485 1.71110 1.22773 0.86179 1.00528 0.89958 1.19701 0.90523 0.86706 0.94253 1.01480 1.21311 1.00647 1.03525 1.30849 0.91294 1.25804 1.01503 0.94543 0.96594 1.69987 1.32401 1.09586 1.44030 0.85335 0.78611 0.78495 0.78199 1.18760 1.20356 1.20738 1.83985 1.16713 1.36631 1.72219 0.88838 0.90434 0.87006 0.80862 0.82888 0.87672 0.95794 0.96599 0.89679 0.86525 0.92481 0.88351 0.94887 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.05 10.42 71.23 0.74 -0.31 16 2 C -0.03 -0.70 7.32 24.83 0.18 -0.52 16 3 C -0.22 -5.49 10.81 22.19 0.24 -5.25 16 4 C -0.20 -6.06 10.81 22.19 0.24 -5.82 16 5 C -0.03 -0.95 5.02 24.83 0.12 -0.83 16 6 C 0.15 6.25 5.26 85.56 0.45 6.70 16 7 N -0.53 -23.77 4.67 -878.94 -4.11 -27.88 16 8 C 0.03 1.06 5.09 86.32 0.44 1.50 16 9 C 0.06 2.40 7.01 72.01 0.50 2.90 16 10 O -0.42 -19.59 10.83 -148.98 -1.61 -21.21 16 11 C 0.08 4.24 6.02 72.02 0.43 4.67 16 12 C 0.20 10.26 1.93 44.18 0.09 10.34 16 13 H -0.03 -1.94 8.14 -2.39 -0.02 -1.96 16 14 C -0.53 -28.41 8.03 25.60 0.21 -28.20 16 15 H 0.07 3.63 6.56 -2.91 -0.02 3.62 16 16 C 0.02 0.82 5.30 84.66 0.45 1.26 16 17 N -0.92 -52.45 11.36 21.45 0.24 -52.21 16 18 Si 0.97 42.57 29.54 68.60 2.03 44.59 16 19 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 20 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 22 O -0.20 -6.63 9.97 -2.54 -0.03 -6.65 16 23 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 25 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 27 H 0.15 4.42 8.06 -2.91 -0.02 4.40 16 28 H 0.11 4.37 6.72 -2.39 -0.02 4.35 16 29 H 0.02 1.06 8.08 -2.39 -0.02 1.04 16 30 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 3.10 6.29 -2.39 -0.02 3.08 16 32 H 0.12 3.51 8.14 -2.38 -0.02 3.49 16 33 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.10 5.57 6.18 -2.38 -0.01 5.55 16 35 H 0.03 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -63.78 294.10 1.68 -62.09 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 1.06 Total: 14.79 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 4.10 Total: -13.54 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -3.86 Total: -80.08 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -1.64 Total: -27.86 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Total: -63.78 1.68 -62.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260182528.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.288 kcal (2) G-P(sol) polarization free energy of solvation -63.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds