Wall clock time and date at job start Mon Mar 30 2020 05:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36000 * 116.99683 * 2 1 4 4 C 1.38556 * 120.07442 * 359.97438 * 3 2 1 5 5 C 1.38239 * 120.00058 * 180.02562 * 4 3 2 6 6 C 1.38254 * 120.14767 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.92911 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.46928 * 170.83010 * 7 6 5 9 9 C 1.50699 * 109.47014 * 50.82838 * 7 6 5 10 10 H 1.07998 * 120.00386 * 0.02562 * 9 7 6 11 11 C 1.37875 * 119.99837 * 179.97438 * 9 7 6 12 12 N 1.31522 * 120.00085 * 0.02562 * 11 9 7 13 13 Si 1.86804 * 120.00059 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.46939 * 269.99847 * 13 11 9 15 15 H 1.48495 * 109.47084 * 30.00060 * 13 11 9 16 16 H 1.48497 * 109.47201 * 150.00145 * 13 11 9 17 17 N 1.46900 * 109.46956 * 290.83034 * 7 6 5 18 18 C 1.46902 * 110.99771 * 297.21965 * 17 7 6 19 19 C 1.46895 * 110.99990 * 61.17314 * 17 7 6 20 20 C 1.38243 * 120.14546 * 0.27459 * 6 5 4 21 21 C 1.38569 * 119.99712 * 359.49359 * 20 6 5 22 22 O 1.35994 * 120.07295 * 180.24788 * 21 20 6 23 23 H 1.09000 * 109.47124 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47559 * 300.00186 * 1 2 3 25 25 H 1.08993 * 109.47234 * 60.00555 * 1 2 3 26 26 H 1.08002 * 120.00169 * 0.04744 * 4 3 2 27 27 H 1.08000 * 119.93237 * 180.02562 * 5 4 3 28 28 H 0.97001 * 119.99881 * 359.97438 * 12 11 9 29 29 H 1.08999 * 109.47408 * 60.00292 * 18 17 7 30 30 H 1.09002 * 109.47032 * 179.97438 * 18 17 7 31 31 H 1.08997 * 109.47437 * 300.00434 * 18 17 7 32 32 H 1.09001 * 109.47127 * 51.12272 * 19 17 7 33 33 H 1.09006 * 109.46932 * 171.11597 * 19 17 7 34 34 H 1.09000 * 109.47487 * 291.11813 * 19 17 7 35 35 H 1.08001 * 120.00181 * 179.74304 * 20 6 5 36 36 H 0.96694 * 114.00225 * 270.23088 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2931 2.3748 -0.0005 5 6 1.9222 3.6057 -0.0011 6 6 3.3028 3.6799 -0.0005 7 6 3.9835 5.0245 -0.0005 8 1 5.0527 4.8904 0.1637 9 6 3.4093 5.8782 1.1006 10 1 2.6297 5.4863 1.7370 11 6 3.8799 7.1593 1.2961 12 7 4.8296 7.6364 0.5214 13 14 3.1686 8.2174 2.6615 14 1 2.0121 8.9884 2.1387 15 1 2.7197 7.3480 3.7785 16 1 4.2085 9.1569 3.1524 17 7 3.7658 5.6835 -1.2952 18 6 4.3715 4.9106 -2.3878 19 6 2.3343 5.9061 -1.5385 20 6 4.0602 2.5235 -0.0052 21 6 3.4359 1.2864 0.0002 22 8 4.1795 0.1478 0.0007 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 0.2145 2.3196 -0.0002 27 1 1.3341 4.5115 -0.0011 28 1 5.1992 7.0869 -0.1873 29 1 3.9240 3.9172 -2.4217 30 1 4.1951 5.4205 -3.3349 31 1 5.4443 4.8201 -2.2177 32 1 1.8922 6.4037 -0.6753 33 1 2.2089 6.5319 -2.4222 34 1 1.8396 4.9481 -1.6985 35 1 5.1385 2.5842 -0.0090 36 1 4.3946 -0.1819 -0.8825 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260500294.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:46 Heat of formation + Delta-G solvation = -41.407211 kcal Electronic energy + Delta-G solvation = -19080.282322 eV Core-core repulsion = 16144.632188 eV Total energy + Delta-G solvation = -2935.650134 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.15854 -38.11397 -37.16498 -35.14118 -32.32689 -30.30456 -29.58103 -27.63044 -26.64092 -25.99347 -23.52397 -22.08006 -21.71733 -19.94518 -18.15258 -17.32153 -16.77187 -16.10346 -15.60385 -14.89670 -14.26771 -14.24022 -14.06846 -13.72060 -13.71749 -13.60223 -13.03351 -12.14204 -11.91090 -11.81323 -11.57599 -11.40891 -11.01558 -10.92781 -10.73730 -10.66231 -10.45400 -10.29879 -10.12195 -9.99244 -8.68990 -8.37314 -8.32906 -7.55757 -7.20674 -6.20980 -4.03310 1.65097 1.83018 3.42248 3.45494 3.49222 3.64419 4.06723 4.49674 4.58801 5.02678 5.15252 5.16002 5.21465 5.43366 5.49794 5.61618 5.74227 5.90428 5.99173 6.02283 6.13171 6.21498 6.32535 6.42671 6.48971 6.64761 6.78002 6.80394 7.00154 7.13769 7.40135 7.46355 7.86522 8.02576 8.18108 8.46460 8.57198 8.99657 9.77302 11.17609 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.025150 B = 0.006856 C = 0.006385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.052570 B = 4083.082157 C = 4384.144218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.080 3.920 4 C -0.202 4.202 5 C -0.072 4.072 6 C -0.086 4.086 7 C 0.234 3.766 8 H 0.040 0.960 9 C -0.605 4.605 10 H 0.051 0.949 11 C 0.039 3.961 12 N -0.888 5.888 13 Si 1.063 2.937 14 H -0.289 1.289 15 H -0.290 1.290 16 H -0.285 1.285 17 N -0.520 5.520 18 C 0.022 3.978 19 C 0.033 3.967 20 C -0.110 4.110 21 C 0.064 3.936 22 O -0.490 6.490 23 H 0.094 0.906 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.123 0.877 27 H 0.136 0.864 28 H 0.289 0.711 29 H 0.011 0.989 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.013 0.987 35 H 0.127 0.873 36 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.639 -10.702 -4.319 13.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.035 3.965 4 C -0.221 4.221 5 C -0.090 4.090 6 C -0.088 4.088 7 C 0.129 3.871 8 H 0.058 0.942 9 C -0.644 4.644 10 H 0.069 0.931 11 C -0.172 4.172 12 N -0.521 5.521 13 Si 0.892 3.108 14 H -0.216 1.216 15 H -0.217 1.217 16 H -0.211 1.211 17 N -0.243 5.243 18 C -0.127 4.127 19 C -0.115 4.115 20 C -0.129 4.129 21 C 0.019 3.981 22 O -0.298 6.298 23 H 0.113 0.887 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.141 0.859 27 H 0.153 0.847 28 H 0.102 0.898 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.058 0.942 34 H 0.031 0.969 35 H 0.145 0.855 36 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -6.219 -8.869 -2.995 11.238 hybrid contribution -0.789 -2.309 -1.300 2.765 sum -7.007 -11.178 -4.295 13.874 Atomic orbital electron populations 1.22974 0.79294 1.03249 1.01168 1.86081 1.20573 1.26867 1.89431 1.19307 0.91592 0.84458 1.01185 1.21146 0.99436 0.92220 1.09270 1.21199 0.94914 0.96675 0.96216 1.21014 0.93896 0.97398 0.96507 1.18632 0.95408 0.85131 0.87951 0.94219 1.21737 1.25515 1.01200 1.15938 0.93097 1.25599 0.95218 0.96047 1.00310 1.70537 1.23164 1.40485 1.17925 0.83648 0.75955 0.75735 0.75476 1.21582 1.21656 1.21069 1.62780 1.13151 1.46406 1.01930 1.22329 0.99518 0.95411 0.95464 1.22367 0.89848 0.98164 1.01163 1.21268 1.00272 0.90541 1.00816 1.17717 0.86002 0.86245 1.08164 1.84886 1.72085 1.40175 1.32639 0.88734 0.92882 0.93044 0.85873 0.84659 0.89794 0.97077 0.93214 0.92643 0.89946 0.94217 0.96874 0.85488 0.76910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.31 16 2 O -0.32 -4.97 10.28 -34.24 -0.35 -5.32 16 3 C 0.08 1.40 6.70 -39.12 -0.26 1.13 16 4 C -0.20 -3.44 9.04 -39.46 -0.36 -3.80 16 5 C -0.07 -1.39 6.76 -39.58 -0.27 -1.66 16 6 C -0.09 -1.80 3.54 -104.61 -0.37 -2.17 16 7 C 0.23 5.59 1.64 -70.02 -0.11 5.48 16 8 H 0.04 1.04 7.77 -51.93 -0.40 0.63 16 9 C -0.61 -16.02 6.47 -34.44 -0.22 -16.24 16 10 H 0.05 1.37 7.31 -52.49 -0.38 0.98 16 11 C 0.04 1.05 5.39 -17.82 -0.10 0.96 16 12 N -0.89 -25.84 13.51 55.43 0.75 -25.09 16 13 Si 1.06 24.54 29.90 -169.99 -5.08 19.45 16 14 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 17 N -0.52 -11.70 3.59 -246.00 -0.88 -12.58 16 18 C 0.02 0.42 9.34 60.07 0.56 0.98 16 19 C 0.03 0.68 7.89 60.06 0.47 1.15 16 20 C -0.11 -2.13 9.41 -39.46 -0.37 -2.50 16 21 C 0.06 1.16 6.72 -39.12 -0.26 0.90 16 22 O -0.49 -8.01 13.29 -34.22 -0.45 -8.46 16 23 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 25 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 26 H 0.12 1.74 6.30 -52.49 -0.33 1.41 16 27 H 0.14 2.66 5.70 -52.49 -0.30 2.36 16 28 H 0.29 8.44 6.39 -40.82 -0.26 8.18 16 29 H 0.01 0.20 7.02 -51.93 -0.36 -0.16 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.85 6.38 -51.93 -0.33 1.52 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.01 0.25 5.53 -51.93 -0.29 -0.04 16 35 H 0.13 2.36 7.97 -52.49 -0.42 1.94 16 36 H 0.38 4.29 9.06 45.56 0.41 4.70 16 LS Contribution 291.90 15.07 4.40 4.40 Total: -1.00 -31.02 291.90 -5.87 -36.89 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -3.95 Total: 5.20 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -0.30 Total: -14.48 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: -0.13 Total: -37.68 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.81 Total: -13.79 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -5.08 Total: 19.45 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.02 -5.87 -36.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260500294.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.512 kcal (2) G-P(sol) polarization free energy of solvation -31.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds