Wall clock time and date at job start Mon Mar 30 2020 04:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50700 * 120.00072 * 2 1 4 4 N 1.46495 * 109.47552 * 124.99685 * 3 2 1 5 5 C 1.46498 * 120.00261 * 274.92480 * 4 3 2 6 6 C 1.50703 * 109.47397 * 269.99886 * 5 4 3 7 7 H 1.07999 * 119.99158 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99924 * 179.97438 * 6 5 4 9 9 N 1.31524 * 119.99632 * 179.97438 * 8 6 5 10 10 Si 1.86795 * 120.00274 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47219 * 90.00068 * 10 8 6 12 12 H 1.48504 * 109.46896 * 209.99595 * 10 8 6 13 13 H 1.48492 * 109.47293 * 329.99856 * 10 8 6 14 14 C 1.34784 * 120.00143 * 94.91859 * 4 3 2 15 15 O 1.21740 * 120.00088 * 185.32763 * 14 4 3 16 16 C 1.41796 * 119.99664 * 5.33065 * 14 4 3 17 17 C 1.33464 * 118.78822 * 75.40744 * 16 14 4 18 18 O 1.34346 * 123.08128 * 180.15778 * 17 16 14 19 19 C 1.45361 * 117.47844 * 343.64889 * 18 17 16 20 20 C 1.53477 * 108.26470 * 47.47945 * 19 18 17 21 21 C 1.50415 * 118.78632 * 255.13916 * 16 14 4 22 22 H 1.08004 * 120.00029 * 0.02562 * 1 2 3 23 23 H 1.08001 * 120.00304 * 179.97438 * 1 2 3 24 24 H 1.07996 * 120.00366 * 179.97438 * 2 1 3 25 25 H 1.09005 * 109.47251 * 4.99870 * 3 2 1 26 26 H 1.09000 * 109.47146 * 245.00041 * 3 2 1 27 27 H 1.09005 * 109.46914 * 29.99614 * 5 4 3 28 28 H 1.09007 * 109.47404 * 149.99612 * 5 4 3 29 29 H 0.96998 * 119.99827 * 179.97438 * 9 8 6 30 30 H 1.08003 * 118.45786 * 0.13136 * 17 16 14 31 31 H 1.08996 * 109.70297 * 167.17013 * 19 18 17 32 32 H 1.09001 * 109.70532 * 287.74490 * 19 18 17 33 33 H 1.08997 * 109.70939 * 56.98617 * 20 19 18 34 34 H 1.09005 * 109.70522 * 177.60910 * 20 19 18 35 35 H 1.09007 * 109.45054 * 282.63457 * 21 16 14 36 36 H 1.08989 * 109.45837 * 42.58023 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3320 1.1314 5 6 2.5288 1.7638 2.4518 6 6 2.7157 3.2530 2.5880 7 1 3.1389 3.8208 1.7726 8 6 2.3465 3.8904 3.7535 9 7 2.5102 5.1900 3.8725 10 14 1.6152 2.9081 5.1640 11 1 2.7044 2.4397 6.0581 12 1 0.6791 3.7674 5.9325 13 1 0.8807 1.7365 4.6228 14 6 4.2772 0.9593 0.9576 15 8 5.0255 0.8885 1.9152 16 6 4.7559 0.6498 -0.3408 17 6 5.0004 1.6493 -1.1908 18 8 5.4522 1.4547 -2.4410 19 6 6.0201 0.1538 -2.7540 20 6 5.0643 -0.9269 -2.2306 21 6 4.9753 -0.7924 -0.7071 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5401 -0.9353 -0.0004 24 1 1.8500 -0.9352 0.0004 25 1 1.3585 2.1317 0.0895 26 1 2.6212 1.4026 -0.9314 27 1 1.4725 1.5186 2.5633 28 1 3.1038 1.2533 3.2244 29 1 2.2501 5.6385 4.6923 30 1 4.8266 2.6620 -0.8581 31 1 6.1337 0.0525 -3.8333 32 1 6.9919 0.0511 -2.2710 33 1 4.0765 -0.7880 -2.6699 34 1 5.4474 -1.9137 -2.4908 35 1 5.9035 -1.1442 -0.2567 36 1 4.1430 -1.3914 -0.3379 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292234520.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:44 Heat of formation + Delta-G solvation = -33.599799 kcal Electronic energy + Delta-G solvation = -18871.552849 eV Core-core repulsion = 15936.241271 eV Total energy + Delta-G solvation = -2935.311579 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.36842 -38.70590 -35.66778 -34.01006 -33.11128 -32.22637 -31.50927 -28.18421 -25.87390 -25.43556 -24.13585 -22.38491 -20.17129 -19.60025 -18.23388 -17.02244 -16.93149 -16.50831 -15.94271 -15.38301 -14.68323 -14.36848 -14.13961 -14.01421 -13.53860 -13.18256 -12.89197 -12.86257 -12.65897 -12.27981 -11.66799 -11.60355 -11.31349 -11.11260 -10.96380 -10.90741 -10.60992 -10.50809 -10.12381 -9.56463 -9.23270 -9.07868 -8.57674 -8.17626 -7.69535 -6.07822 -4.06449 2.03544 2.42410 3.21757 3.31028 3.37096 3.39364 3.45554 4.09541 4.41402 4.61599 4.67542 4.88621 5.13437 5.22465 5.24917 5.28081 5.35398 5.41177 5.48077 5.55664 5.71832 5.78842 6.00306 6.01149 6.16829 6.29249 6.36185 6.76585 6.77393 6.90207 7.00488 7.39795 7.41253 7.63186 8.28248 8.48040 8.92931 9.00513 9.52988 11.05449 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.025075 B = 0.006765 C = 0.006085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.400892 B = 4137.730188 C = 4600.288884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.162 4.162 3 C 0.135 3.865 4 N -0.585 5.585 5 C 0.215 3.785 6 C -0.529 4.529 7 H 0.074 0.926 8 C 0.073 3.927 9 N -0.898 5.898 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.565 3.435 15 O -0.542 6.542 16 C -0.276 4.276 17 C 0.096 3.904 18 O -0.316 6.316 19 C 0.055 3.945 20 C -0.155 4.155 21 C -0.059 4.059 22 H 0.099 0.901 23 H 0.093 0.907 24 H 0.103 0.897 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.030 0.970 28 H 0.037 0.963 29 H 0.264 0.736 30 H 0.168 0.832 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.812 -12.445 -14.045 18.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.181 4.181 3 C 0.012 3.988 4 N -0.315 5.315 5 C 0.094 3.906 6 C -0.567 4.567 7 H 0.092 0.908 8 C -0.129 4.129 9 N -0.536 5.536 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.352 3.648 15 O -0.421 6.421 16 C -0.281 4.281 17 C 0.031 3.969 18 O -0.228 6.228 19 C -0.020 4.020 20 C -0.193 4.193 21 C -0.097 4.097 22 H 0.118 0.882 23 H 0.112 0.888 24 H 0.121 0.879 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.185 0.815 31 H 0.122 0.878 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.185 -12.175 -13.555 18.259 hybrid contribution -0.444 -0.562 1.034 1.258 sum 0.741 -12.737 -12.521 17.876 Atomic orbital electron populations 1.23821 0.95846 1.01747 1.01087 1.23407 0.96240 0.99069 0.99432 1.20609 0.92935 0.95132 0.90152 1.47985 1.08503 1.63737 1.11304 1.19652 0.94695 0.96132 0.80098 1.21329 1.42365 0.90675 1.02375 0.90771 1.24840 0.95225 0.94795 0.98082 1.69900 1.47956 1.08385 1.27372 0.86857 0.79605 0.80340 0.82981 1.19903 1.21070 1.19010 1.16685 0.82252 0.77448 0.88377 1.90794 1.55756 1.52926 1.42585 1.20163 1.14037 0.96525 0.97356 1.22535 0.92840 0.98828 0.82679 1.86230 1.74099 1.35198 1.27271 1.23429 0.96082 0.81134 1.01334 1.22178 1.01028 0.99501 0.96547 1.20102 1.02729 0.92069 0.94753 0.88235 0.88837 0.87919 0.89627 0.90018 0.95219 0.94519 0.92573 0.81541 0.87836 0.91254 0.90369 0.89914 0.90653 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.42 14.32 29.02 0.42 -2.00 16 2 C -0.16 -2.33 9.84 -36.02 -0.35 -2.68 16 3 C 0.14 2.26 5.77 -5.20 -0.03 2.23 16 4 N -0.58 -12.36 2.44 -179.79 -0.44 -12.80 16 5 C 0.21 5.38 4.29 -5.19 -0.02 5.36 16 6 C -0.53 -15.29 9.94 -34.44 -0.34 -15.64 16 7 H 0.07 2.32 8.06 -52.49 -0.42 1.89 16 8 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 9 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 10 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 11 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 14 C 0.56 12.01 6.63 -14.90 -0.10 11.91 16 15 O -0.54 -14.01 16.64 5.15 0.09 -13.92 16 16 C -0.28 -4.51 4.03 -105.07 -0.42 -4.93 16 17 C 0.10 1.46 9.28 29.06 0.27 1.73 16 18 O -0.32 -4.13 10.48 -14.88 -0.16 -4.29 16 19 C 0.05 0.52 7.15 37.40 0.27 0.79 16 20 C -0.15 -1.43 6.23 -26.38 -0.16 -1.60 16 21 C -0.06 -0.75 5.89 -27.92 -0.16 -0.92 16 22 H 0.10 1.27 7.84 -52.48 -0.41 0.86 16 23 H 0.09 1.03 8.06 -52.49 -0.42 0.61 16 24 H 0.10 1.39 7.92 -52.49 -0.42 0.98 16 25 H 0.09 1.48 7.76 -51.93 -0.40 1.08 16 26 H 0.08 1.21 5.70 -51.93 -0.30 0.92 16 27 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 28 H 0.04 0.99 6.78 -51.92 -0.35 0.64 16 29 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.17 2.63 7.98 -52.48 -0.42 2.21 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 36 H 0.08 0.95 8.00 -51.94 -0.42 0.53 16 LS Contribution 304.82 15.07 4.59 4.59 Total: -1.00 -34.26 304.82 -5.77 -40.02 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.21 Total: -0.11 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -0.75 Total: -3.71 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.33 Total: -39.82 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.07 Total: -18.21 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.26 -5.77 -40.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292234520.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.425 kcal (2) G-P(sol) polarization free energy of solvation -34.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds