Wall clock time and date at job start Mon Mar 30 2020 04:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47247 * 10.57168 * 3 2 1 5 5 C 1.37096 * 119.99968 * 264.51408 * 4 3 2 6 6 H 1.08001 * 119.99943 * 194.38888 * 5 4 3 7 7 C 1.38949 * 120.00000 * 14.37993 * 5 4 3 8 8 N 1.31411 * 120.00222 * 25.40090 * 7 5 4 9 9 Si 1.86805 * 120.00038 * 205.39376 * 7 5 4 10 10 H 1.48504 * 109.46688 * 94.99793 * 9 7 5 11 11 H 1.48504 * 109.46946 * 214.99391 * 9 7 5 12 12 H 1.48494 * 109.47225 * 334.99664 * 9 7 5 13 13 C 1.34774 * 119.99910 * 84.50420 * 4 3 2 14 14 O 1.21297 * 119.99809 * 179.97438 * 13 4 3 15 15 C 1.50700 * 120.00159 * 0.02562 * 13 4 3 16 16 H 1.09001 * 110.53638 * 331.28177 * 15 13 4 17 17 C 1.54805 * 110.48620 * 208.66808 * 15 13 4 18 18 C 1.54997 * 102.09142 * 220.43799 * 17 15 13 19 19 O 1.44376 * 103.48898 * 37.02272 * 18 17 15 20 20 C 1.43741 * 106.97721 * 319.93858 * 19 18 17 21 21 H 1.09000 * 109.87916 * 267.08794 * 20 19 18 22 22 C 1.53004 * 109.88075 * 146.08739 * 20 19 18 23 23 C 1.53000 * 109.46830 * 63.68291 * 22 20 19 24 24 H 4.40644 * 5.51458 * 179.97438 * 4 1 2 25 25 H 1.09002 * 109.47356 * 250.57357 * 3 2 1 26 26 H 1.09001 * 109.46905 * 130.57271 * 3 2 1 27 27 H 0.96999 * 120.00661 * 180.02562 * 8 7 5 28 28 H 1.08998 * 110.91229 * 102.24158 * 17 15 13 29 29 H 1.09001 * 110.94245 * 338.64952 * 17 15 13 30 30 H 1.08998 * 110.61843 * 278.52095 * 18 17 15 31 31 H 1.09008 * 110.75340 * 155.58652 * 18 17 15 32 32 H 1.08998 * 109.47168 * 183.68714 * 22 20 19 33 33 H 1.09000 * 109.46943 * 303.68491 * 22 20 19 34 34 H 1.08994 * 109.47116 * 300.00094 * 23 22 20 35 35 H 1.09000 * 109.47194 * 60.00355 * 23 22 20 36 36 H 1.09008 * 109.46558 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3569 -0.2534 5 6 3.4709 -2.1717 0.7968 6 1 4.0423 -3.0712 0.6211 7 6 3.0763 -1.8402 2.0871 8 7 2.0162 -1.0872 2.2771 9 14 4.0527 -2.4651 3.5520 10 1 5.0362 -1.4330 3.9678 11 1 3.1276 -2.7496 4.6784 12 1 4.7702 -3.7091 3.1743 13 6 3.2544 -1.8049 -1.5189 14 8 3.6597 -2.9287 -1.7287 15 6 2.8855 -0.9091 -2.6733 16 1 2.1135 -0.1997 -2.3753 17 6 2.4101 -1.7513 -3.8821 18 6 3.0657 -1.0078 -5.0737 19 8 4.3471 -0.5972 -4.5505 20 6 4.1289 -0.1647 -3.1972 21 1 3.9534 0.9109 -3.1756 22 6 5.3466 -0.5103 -2.3377 23 6 6.5646 0.2652 -2.8438 24 1 -1.0498 -0.0005 0.0001 25 1 3.0092 0.3426 0.9692 26 1 3.0090 0.6692 -0.7806 27 1 1.7409 -0.8554 3.1779 28 1 1.3233 -1.7352 -3.9641 29 1 2.7779 -2.7750 -3.8125 30 1 2.4713 -0.1397 -5.3584 31 1 3.1950 -1.6784 -5.9234 32 1 5.1482 -0.2391 -1.3008 33 1 5.5447 -1.5802 -2.4019 34 1 6.7629 -0.0061 -3.8806 35 1 6.3665 1.3351 -2.7796 36 1 7.4322 0.0186 -2.2317 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304136969.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:55 Heat of formation + Delta-G solvation = -17.555689 kcal Electronic energy + Delta-G solvation = -19477.160871 eV Core-core repulsion = 16542.545017 eV Total energy + Delta-G solvation = -2934.615854 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.02291 -37.77926 -35.18032 -33.20752 -32.32702 -31.48347 -31.19976 -28.10645 -26.48220 -24.87333 -23.39825 -21.66128 -21.05542 -18.48459 -17.89377 -16.69690 -16.42485 -15.90557 -15.45366 -15.07381 -14.43975 -14.10763 -13.95931 -13.15521 -13.00845 -12.81889 -12.71119 -12.26370 -11.85436 -11.80572 -11.45308 -11.18913 -11.07578 -10.98075 -10.55177 -10.49366 -10.40087 -10.30622 -10.17688 -9.46053 -9.37206 -9.28523 -8.94115 -8.39159 -7.90869 -6.38833 -3.85335 3.12275 3.24772 3.29635 3.59457 3.82960 3.97277 4.14678 4.19729 4.77017 4.90894 5.01072 5.18009 5.32002 5.41707 5.44196 5.51617 5.64189 5.69562 5.84885 5.89085 5.96932 6.04225 6.15070 6.24083 6.31031 6.40276 6.56087 6.59899 6.68400 6.82045 6.96138 7.22103 7.54480 8.01676 8.39803 8.73486 9.11056 9.33389 9.89039 10.62869 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.023476 B = 0.008227 C = 0.007158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.412792 B = 3402.752185 C = 3910.839062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.118 4.118 3 C 0.229 3.771 4 N -0.439 5.439 5 C -0.317 4.317 6 H 0.106 0.894 7 C 0.033 3.967 8 N -0.858 5.858 9 Si 0.916 3.084 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.467 3.533 14 O -0.578 6.578 15 C -0.139 4.139 16 H 0.091 0.909 17 C -0.139 4.139 18 C 0.049 3.951 19 O -0.371 6.371 20 C 0.096 3.904 21 H 0.066 0.934 22 C -0.133 4.133 23 C -0.143 4.143 24 H 0.200 0.800 25 H 0.111 0.889 26 H 0.061 0.939 27 H 0.268 0.732 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.047 0.953 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.836 5.947 -7.522 9.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.119 4.119 3 C 0.106 3.894 4 N -0.156 5.156 5 C -0.444 4.444 6 H 0.124 0.876 7 C -0.172 4.172 8 N -0.495 5.495 9 Si 0.743 3.257 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.193 1.193 13 C 0.256 3.744 14 O -0.462 6.462 15 C -0.162 4.162 16 H 0.109 0.891 17 C -0.177 4.177 18 C -0.028 4.028 19 O -0.290 6.290 20 C 0.038 3.962 21 H 0.084 0.916 22 C -0.170 4.170 23 C -0.201 4.201 24 H 0.217 0.783 25 H 0.129 0.871 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.114 0.886 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.170 5.454 -7.531 9.372 hybrid contribution -0.411 -0.138 1.139 1.219 sum 0.760 5.316 -6.392 8.348 Atomic orbital electron populations 1.24299 0.95402 1.02271 1.05638 1.23222 0.94411 0.98226 0.96059 1.18315 0.84246 0.84902 1.01942 1.43737 1.55845 1.11322 1.04742 1.19680 1.32689 1.07829 0.84197 0.87603 1.25240 0.95242 0.97722 0.98998 1.70147 1.19501 1.37265 1.22605 0.86066 0.79656 0.79379 0.80610 1.20351 1.21169 1.19315 1.19493 0.84098 0.87514 0.83304 1.90511 1.51075 1.20611 1.84024 1.22728 0.98456 0.98486 0.96483 0.89085 1.23069 1.00558 1.01557 0.92505 1.23499 0.84947 0.97520 0.96840 1.88837 1.28968 1.84940 1.26284 1.22630 0.94415 0.96688 0.82493 0.91614 1.21882 0.93725 1.02632 0.98803 1.21679 0.97682 0.99396 1.01295 0.78306 0.87128 0.92081 0.92152 0.90707 0.88644 0.92706 0.89287 0.90061 0.89917 0.92468 0.93359 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.21 19.25 29.55 0.57 -4.64 16 2 C -0.12 -2.58 10.74 -37.12 -0.40 -2.98 16 3 C 0.23 4.95 4.54 -6.83 -0.03 4.92 16 4 N -0.44 -10.72 2.15 -117.93 -0.25 -10.97 16 5 C -0.32 -8.52 9.34 -14.93 -0.14 -8.66 16 6 H 0.11 3.03 7.37 -52.49 -0.39 2.64 16 7 C 0.03 0.83 4.79 -17.47 -0.08 0.75 16 8 N -0.86 -22.10 9.62 55.50 0.53 -21.57 16 9 Si 0.92 20.16 29.62 -169.99 -5.04 15.12 16 10 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 C 0.47 11.03 4.53 -10.99 -0.05 10.98 16 14 O -0.58 -15.63 14.63 5.54 0.08 -15.55 16 15 C -0.14 -2.62 2.50 -90.25 -0.23 -2.85 16 16 H 0.09 1.64 6.01 -51.93 -0.31 1.32 16 17 C -0.14 -2.35 6.65 -24.73 -0.16 -2.51 16 18 C 0.05 0.70 7.72 38.21 0.29 0.99 16 19 O -0.37 -6.33 10.69 -35.23 -0.38 -6.71 16 20 C 0.10 1.64 3.22 -26.16 -0.08 1.55 16 21 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 22 C -0.13 -2.38 4.49 -26.73 -0.12 -2.50 16 23 C -0.14 -2.11 9.80 37.16 0.36 -1.75 16 24 H 0.20 3.26 7.80 -54.10 -0.42 2.84 16 25 H 0.11 2.52 6.36 -51.93 -0.33 2.19 16 26 H 0.06 1.11 6.59 -51.93 -0.34 0.77 16 27 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.10 1.85 6.91 -51.93 -0.36 1.49 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 32 H 0.08 1.53 6.86 -51.93 -0.36 1.17 16 33 H 0.08 1.73 7.02 -51.93 -0.36 1.37 16 34 H 0.06 0.84 7.80 -51.93 -0.41 0.44 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 LS Contribution 295.49 15.07 4.45 4.45 Total: -1.00 -30.17 295.49 -5.61 -35.78 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -4.95 Total: 6.14 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -0.07 Total: -6.71 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.28 Total: -32.54 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.30 Total: -22.26 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.04 Total: 15.12 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.17 -5.61 -35.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304136969.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.224 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds