Wall clock time and date at job start Mon Mar 30 2020 05:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47235 * 2 1 4 4 C 1.35975 * 117.00359 * 179.97438 * 3 2 1 5 5 C 1.37824 * 120.01440 * 0.02562 * 4 3 2 6 6 C 1.40785 * 119.64338 * 180.02562 * 5 4 3 7 7 C 1.41202 * 120.15809 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99594 * 204.54117 * 7 6 5 9 9 C 1.39870 * 120.00232 * 24.54730 * 7 6 5 10 10 N 1.30888 * 119.99947 * 17.96523 * 9 7 6 11 11 Si 1.86794 * 120.00024 * 197.97116 * 9 7 6 12 12 H 1.48499 * 109.47362 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.46992 * 119.99663 * 11 9 7 14 14 H 1.48506 * 109.47083 * 239.99528 * 11 9 7 15 15 C 1.40855 * 119.68232 * 359.97438 * 6 5 4 16 16 C 1.36458 * 120.03198 * 0.25852 * 15 6 5 17 17 C 1.50695 * 119.81917 * 179.72307 * 16 15 6 18 18 H 1.08996 * 109.47176 * 144.99762 * 17 16 15 19 19 C 1.52992 * 109.47298 * 265.00068 * 17 16 15 20 20 N 1.46908 * 109.47093 * 24.99932 * 17 16 15 21 21 C 1.39156 * 120.35860 * 359.49163 * 16 15 6 22 22 O 1.35739 * 119.83907 * 180.23855 * 21 16 15 23 23 H 1.08995 * 109.47147 * 60.00029 * 1 2 3 24 24 H 1.08995 * 109.46857 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46966 * 300.00043 * 1 2 3 26 26 H 1.08999 * 109.46966 * 239.99957 * 2 1 3 27 27 H 1.09007 * 109.46847 * 120.00118 * 2 1 3 28 28 H 1.08002 * 120.17724 * 0.03918 * 5 4 3 29 29 H 0.97001 * 120.00163 * 180.02562 * 10 9 7 30 30 H 1.08008 * 119.98227 * 179.97438 * 15 6 5 31 31 H 1.09003 * 109.47275 * 60.00178 * 19 17 16 32 32 H 1.09001 * 109.47578 * 179.97438 * 19 17 16 33 33 H 1.09003 * 109.47349 * 299.99957 * 19 17 16 34 34 H 1.00898 * 110.99450 * 176.04483 * 20 17 16 35 35 H 1.00892 * 110.99911 * 300.00144 * 20 17 16 36 36 H 0.96706 * 113.99556 * 270.26899 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3544 1.5254 0.0005 5 6 4.1943 0.4327 0.0005 6 6 5.5887 0.6262 0.0016 7 6 6.4592 -0.4855 0.0011 8 1 7.4618 -0.3865 0.3903 9 6 6.0232 -1.7150 -0.5037 10 7 4.9721 -1.7672 -1.2819 11 14 6.9409 -3.2823 -0.0670 12 1 8.0855 -2.9548 0.8206 13 1 6.0219 -4.2151 0.6334 14 1 7.4451 -3.9229 -1.3083 15 6 6.1114 1.9342 0.0022 16 6 5.2677 3.0068 0.0070 17 6 5.8321 4.4040 0.0139 18 1 5.1879 5.0590 -0.5727 19 6 5.9060 4.9171 1.4533 20 7 7.1797 4.3908 -0.5710 21 6 3.8892 2.8172 0.0007 22 8 3.0597 3.8917 0.0007 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.7848 -0.5667 -0.0006 29 1 4.6695 -2.6199 -1.6316 30 1 7.1804 2.0883 0.0035 31 1 6.5503 4.2622 2.0399 32 1 6.3146 5.9276 1.4584 33 1 4.9061 4.9270 1.8874 34 1 7.5543 5.3253 -0.6369 35 1 7.7963 3.7902 -0.0447 36 1 2.8190 4.2028 0.8842 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309158020.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:25 Heat of formation + Delta-G solvation = -74.471444 kcal Electronic energy + Delta-G solvation = -18816.607975 eV Core-core repulsion = 15879.524069 eV Total energy + Delta-G solvation = -2937.083906 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.16466 -37.35880 -35.66880 -35.04532 -32.96365 -31.08301 -29.13167 -28.19013 -27.86266 -25.00217 -23.39383 -21.83365 -20.82686 -19.52890 -17.41009 -17.17086 -16.09859 -15.84403 -15.26795 -14.92351 -14.65543 -14.03390 -13.62184 -13.21887 -13.15386 -12.84238 -12.58568 -12.34341 -12.17114 -11.85524 -11.65033 -11.47991 -11.36174 -11.03085 -10.67162 -10.55342 -10.51980 -10.20700 -9.73091 -9.70076 -9.21875 -9.00914 -8.26661 -7.26643 -6.98864 -6.73604 -4.42316 2.62780 2.95570 3.02602 3.07341 3.10905 3.86604 4.15891 4.47019 5.09510 5.40223 5.42339 5.46898 5.57857 5.61514 5.74745 5.78321 5.84445 6.05140 6.18113 6.28087 6.30764 6.36799 6.46891 6.75986 6.86199 6.96763 7.07662 7.26284 7.53969 7.61094 7.83646 7.87170 7.93004 8.09210 8.34996 8.52483 8.71646 8.81395 9.10063 10.09731 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.014839 B = 0.009473 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.529994 B = 2955.065347 C = 4630.430532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.059 3.941 3 O -0.323 6.323 4 C 0.122 3.878 5 C -0.249 4.249 6 C 0.132 3.868 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.076 3.924 10 N -0.787 5.787 11 Si 0.907 3.093 12 H -0.259 1.259 13 H -0.272 1.272 14 H -0.274 1.274 15 C -0.216 4.216 16 C -0.040 4.040 17 C 0.135 3.865 18 H 0.085 0.915 19 C -0.175 4.175 20 N -0.839 5.839 21 C -0.060 4.060 22 O -0.487 6.487 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.131 0.869 29 H 0.280 0.720 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.330 0.670 35 H 0.340 0.660 36 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.729 3.427 4.508 5.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.017 4.017 3 O -0.238 6.238 4 C 0.078 3.922 5 C -0.269 4.269 6 C 0.129 3.871 7 C -0.483 4.483 8 H 0.099 0.901 9 C -0.142 4.142 10 N -0.412 5.412 11 Si 0.731 3.269 12 H -0.183 1.183 13 H -0.197 1.197 14 H -0.199 1.199 15 C -0.236 4.236 16 C -0.041 4.041 17 C 0.024 3.976 18 H 0.103 0.897 19 C -0.234 4.234 20 N -0.368 5.368 21 C -0.106 4.106 22 O -0.293 6.293 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.148 0.852 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.142 0.858 35 H 0.155 0.845 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -2.318 3.031 3.072 4.899 hybrid contribution 0.704 -0.669 1.517 1.801 sum -1.614 2.363 4.589 5.408 Atomic orbital electron populations 1.21737 0.94234 1.01787 1.02644 1.22533 0.94109 0.83566 1.01517 1.85944 1.20656 1.27604 1.89607 1.19235 0.81138 0.93864 0.98007 1.21315 0.93877 0.96742 1.14965 1.17403 0.91573 0.91815 0.86268 1.19572 0.99945 0.93450 1.35374 0.90137 1.25943 0.94784 1.01023 0.92483 1.69878 1.21877 1.27738 1.21754 0.86276 0.80415 0.80782 0.79382 1.18294 1.19701 1.19882 1.20354 0.97563 0.91676 1.13959 1.18925 0.91445 0.93680 1.00027 1.20078 0.90168 0.94975 0.92385 0.89710 1.22533 1.02235 0.99859 0.98805 1.58907 1.04074 1.14629 1.59218 1.16975 0.87261 0.82931 1.23431 1.84889 1.67087 1.46653 1.30637 0.92039 0.91262 0.92295 0.91923 0.93091 0.85170 0.90885 0.88161 0.92738 0.93416 0.92336 0.85801 0.84523 0.80462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 10.28 37.16 0.38 -1.77 16 2 C 0.06 1.13 5.46 37.16 0.20 1.33 16 3 O -0.32 -7.41 9.92 -34.19 -0.34 -7.75 16 4 C 0.12 3.06 6.70 -39.14 -0.26 2.79 16 5 C -0.25 -6.49 7.67 -38.77 -0.30 -6.78 16 6 C 0.13 3.49 5.57 -106.82 -0.60 2.89 16 7 C -0.45 -11.78 9.04 -37.85 -0.34 -12.12 16 8 H 0.08 1.99 7.91 -52.48 -0.41 1.58 16 9 C 0.08 1.87 5.13 -17.34 -0.09 1.78 16 10 N -0.79 -19.97 10.96 55.54 0.61 -19.36 16 11 Si 0.91 18.21 29.59 -169.99 -5.03 13.18 16 12 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 13 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 14 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 15 C -0.22 -5.21 8.96 -39.23 -0.35 -5.56 16 16 C -0.04 -0.90 5.03 -104.93 -0.53 -1.42 16 17 C 0.14 2.45 3.31 -68.87 -0.23 2.23 16 18 H 0.08 1.61 7.67 -51.93 -0.40 1.21 16 19 C -0.17 -2.62 9.46 37.15 0.35 -2.27 16 20 N -0.84 -13.88 8.82 -5.66 -0.05 -13.93 16 21 C -0.06 -1.43 6.71 -38.65 -0.26 -1.69 16 22 O -0.49 -10.44 12.37 -33.46 -0.41 -10.85 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 1.28 7.66 -51.93 -0.40 0.89 16 27 H 0.05 0.97 7.66 -51.92 -0.40 0.57 16 28 H 0.13 3.41 4.39 -52.49 -0.23 3.18 16 29 H 0.28 6.42 8.30 -40.82 -0.34 6.09 16 30 H 0.10 2.26 6.23 -52.48 -0.33 1.94 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.33 4.40 9.07 -39.29 -0.36 4.05 16 35 H 0.34 5.46 7.19 -39.30 -0.28 5.18 16 36 H 0.34 5.89 9.06 45.56 0.41 6.31 16 LS Contribution 300.28 15.07 4.53 4.53 Total: -1.00 -29.47 300.28 -6.78 -36.25 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -4.06 Total: 18.55 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -2.02 Total: -20.60 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.56 Total: -33.29 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.75 Total: -18.60 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.47 -6.78 -36.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309158020.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.223 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds