Wall clock time and date at job start Mon Mar 30 2020 03:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35959 * 117.00077 * 2 1 4 4 C 1.37818 * 120.02171 * 354.11042 * 3 2 1 5 5 C 1.40795 * 119.64734 * 179.97438 * 4 3 2 6 6 C 1.41203 * 120.16041 * 179.97438 * 5 4 3 7 7 H 1.07999 * 119.99793 * 329.91528 * 6 5 4 8 8 C 1.39869 * 119.99862 * 149.91483 * 6 5 4 9 9 N 1.30890 * 119.99613 * 165.72432 * 8 6 5 10 10 Si 1.86795 * 120.00484 * 345.72143 * 8 6 5 11 11 H 1.48503 * 109.47031 * 93.41640 * 10 8 6 12 12 H 1.48498 * 109.47470 * 213.41653 * 10 8 6 13 13 H 1.48504 * 109.47120 * 333.42083 * 10 8 6 14 14 C 1.40853 * 119.68189 * 0.02562 * 5 4 3 15 15 C 1.36456 * 120.02909 * 359.74153 * 14 5 4 16 16 C 1.50704 * 119.81766 * 180.27688 * 15 14 5 17 17 C 1.52996 * 109.47016 * 120.24066 * 16 15 14 18 18 C 1.53010 * 109.46645 * 240.24028 * 16 15 14 19 19 N 1.46894 * 109.47076 * 0.23567 * 16 15 14 20 20 C 1.39154 * 120.36164 * 0.51913 * 15 14 5 21 21 O 1.35739 * 119.83989 * 179.75947 * 20 15 14 22 22 H 1.08997 * 109.46830 * 184.73306 * 1 2 3 23 23 H 1.08994 * 109.46850 * 304.73017 * 1 2 3 24 24 H 1.08997 * 109.46728 * 64.73240 * 1 2 3 25 25 H 1.08004 * 120.17692 * 359.96125 * 4 3 2 26 26 H 0.96997 * 119.99985 * 179.97438 * 9 8 6 27 27 H 1.08002 * 119.98161 * 180.02562 * 14 5 4 28 28 H 1.08995 * 109.47668 * 60.00049 * 17 16 15 29 29 H 1.08998 * 109.46681 * 179.97438 * 17 16 15 30 30 H 1.08994 * 109.46979 * 299.99618 * 17 16 15 31 31 H 1.08993 * 109.47254 * 59.99941 * 18 16 15 32 32 H 1.09001 * 109.46826 * 180.02562 * 18 16 15 33 33 H 1.09002 * 109.47053 * 299.99798 * 18 16 15 34 34 H 1.00902 * 111.00131 * 176.04857 * 19 16 15 35 35 H 1.00900 * 111.00460 * 300.00023 * 19 16 15 36 36 H 0.96691 * 114.00201 * 269.72181 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.3018 2.3647 -0.1224 5 6 1.9491 3.6150 -0.1210 6 6 1.1969 4.8034 -0.2463 7 1 0.2716 4.8006 -0.8033 8 6 1.6502 5.9842 0.3510 9 7 1.1211 7.1330 0.0138 10 14 3.0103 5.9217 1.6297 11 1 4.3227 6.1319 0.9672 12 1 2.7895 6.9876 2.6398 13 1 3.0003 4.5960 2.2987 14 6 3.3507 3.6746 0.0051 15 6 4.0746 2.5247 0.1303 16 6 5.5734 2.5944 0.2711 17 6 5.9916 1.9530 1.5957 18 6 6.2301 1.8433 -0.8890 19 7 6.0024 3.9991 0.2502 20 6 3.4370 1.2879 0.1236 21 8 4.1679 0.1505 0.2440 22 1 -0.3633 -1.0242 0.0848 23 1 -0.3633 0.5854 0.8445 24 1 -0.3633 0.4387 -0.9293 25 1 0.2275 2.3096 -0.2192 26 1 1.4352 7.9518 0.4282 27 1 3.8522 4.6312 0.0072 28 1 5.6733 0.9107 1.6112 29 1 7.0756 2.0030 1.6973 30 1 5.5238 2.4880 2.4221 31 1 5.9321 2.3002 -1.8327 32 1 7.3141 1.8933 -0.7870 33 1 5.9117 0.8009 -0.8736 34 1 6.9961 4.0762 0.4075 35 1 5.7377 4.4453 -0.6152 36 1 4.4605 -0.2202 -0.5998 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309168353.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:01 Heat of formation + Delta-G solvation = -63.350088 kcal Electronic energy + Delta-G solvation = -19371.372696 eV Core-core repulsion = 16434.771048 eV Total energy + Delta-G solvation = -2936.601648 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.59579 -37.82427 -35.87075 -35.47631 -33.11369 -29.74533 -28.98110 -28.72684 -26.90991 -26.86826 -24.43722 -21.88186 -21.18387 -19.05699 -17.64307 -17.44343 -15.99992 -15.65752 -15.49062 -15.06413 -14.74616 -14.25217 -14.05258 -13.61093 -13.07341 -12.91196 -12.73050 -12.42982 -11.98418 -11.87902 -11.55447 -11.39856 -11.15970 -10.97528 -10.86468 -10.77826 -10.64142 -9.95107 -9.90638 -9.69221 -9.23872 -9.03451 -8.31313 -7.54355 -7.06753 -6.96182 -4.53845 2.41984 2.66535 3.30652 3.31138 3.45679 4.01946 4.08465 4.37418 4.90196 5.20153 5.24924 5.38670 5.55926 5.60754 5.62004 5.69239 5.87946 5.90923 6.07685 6.22853 6.28779 6.44027 6.48983 6.53439 6.56877 6.76398 6.94120 7.15189 7.28908 7.46092 7.58555 7.74124 7.86674 7.92462 8.16104 8.28017 8.46702 8.72669 8.86482 10.04002 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.016418 B = 0.011970 C = 0.007614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.991628 B = 2338.645089 C = 3676.638448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.323 6.323 3 C 0.137 3.863 4 C -0.293 4.293 5 C 0.113 3.887 6 C -0.440 4.440 7 H 0.089 0.911 8 C 0.081 3.919 9 N -0.808 5.808 10 Si 0.917 3.083 11 H -0.248 1.248 12 H -0.301 1.301 13 H -0.247 1.247 14 C -0.232 4.232 15 C -0.023 4.023 16 C 0.162 3.838 17 C -0.133 4.133 18 C -0.176 4.176 19 N -0.838 5.838 20 C -0.058 4.058 21 O -0.482 6.482 22 H 0.085 0.915 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.109 0.891 26 H 0.286 0.714 27 H 0.122 0.878 28 H 0.079 0.921 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.333 0.667 35 H 0.343 0.657 36 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.311 -7.278 -0.596 9.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.237 6.237 3 C 0.092 3.908 4 C -0.313 4.313 5 C 0.110 3.890 6 C -0.468 4.468 7 H 0.107 0.893 8 C -0.138 4.138 9 N -0.432 5.432 10 Si 0.744 3.256 11 H -0.173 1.173 12 H -0.229 1.229 13 H -0.170 1.170 14 C -0.251 4.251 15 C -0.024 4.024 16 C 0.070 3.930 17 C -0.191 4.191 18 C -0.235 4.235 19 N -0.368 5.368 20 C -0.104 4.104 21 O -0.289 6.289 22 H 0.103 0.897 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.127 0.873 26 H 0.096 0.904 27 H 0.140 0.860 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.145 0.855 35 H 0.157 0.843 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 5.740 -6.987 0.638 9.065 hybrid contribution 0.735 0.038 -0.903 1.165 sum 6.475 -6.949 -0.265 9.502 Atomic orbital electron populations 1.22852 0.80049 1.02135 1.01213 1.85984 1.20024 1.28258 1.89460 1.19158 0.91469 0.83595 0.96535 1.20929 0.98272 0.91765 1.20341 1.17567 0.91384 0.92537 0.87549 1.19455 1.07800 0.91032 1.28464 0.89265 1.26265 0.96586 0.94226 0.96748 1.69701 1.38315 0.99168 1.35975 0.86246 0.80611 0.78979 0.79815 1.17302 1.22895 1.16995 1.20705 0.93531 0.97216 1.13649 1.18985 0.92890 0.92217 0.98293 1.19442 0.91783 0.87075 0.94747 1.21838 0.99164 1.02016 0.96077 1.22624 0.99554 1.02355 0.98947 1.58966 1.20000 1.15064 1.42794 1.16858 0.85656 0.84829 1.23079 1.84926 1.71529 1.40080 1.32339 0.89653 0.93033 0.93357 0.87295 0.90356 0.86034 0.90182 0.93915 0.92498 0.92930 0.93259 0.91381 0.85458 0.84346 0.80160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.82 101.05 0.99 1.52 16 2 O -0.32 -6.56 10.28 -34.15 -0.35 -6.92 16 3 C 0.14 3.10 6.69 -39.14 -0.26 2.83 16 4 C -0.29 -6.94 8.77 -38.77 -0.34 -7.28 16 5 C 0.11 2.87 5.14 -106.82 -0.55 2.32 16 6 C -0.44 -11.83 9.58 -37.85 -0.36 -12.19 16 7 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 8 C 0.08 2.12 5.45 -17.34 -0.09 2.03 16 9 N -0.81 -21.42 13.93 55.54 0.77 -20.65 16 10 Si 0.92 21.43 24.41 -169.99 -4.15 17.28 16 11 H -0.25 -5.49 6.66 56.52 0.38 -5.12 16 12 H -0.30 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.25 -6.15 6.72 56.52 0.38 -5.77 16 14 C -0.23 -5.51 6.12 -39.24 -0.24 -5.75 16 15 C -0.02 -0.49 4.75 -104.92 -0.50 -0.99 16 16 C 0.16 2.83 0.94 -132.75 -0.13 2.70 16 17 C -0.13 -2.25 8.52 37.16 0.32 -1.93 16 18 C -0.18 -2.55 8.54 37.16 0.32 -2.24 16 19 N -0.84 -13.94 7.75 -0.19 0.00 -13.94 16 20 C -0.06 -1.27 6.34 -38.65 -0.25 -1.51 16 21 O -0.48 -9.14 9.78 -33.46 -0.33 -9.47 16 22 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 23 H 0.05 0.82 7.65 -51.93 -0.40 0.42 16 24 H 0.05 0.73 7.68 -51.93 -0.40 0.33 16 25 H 0.11 2.43 6.32 -52.48 -0.33 2.10 16 26 H 0.29 6.90 8.30 -40.82 -0.34 6.57 16 27 H 0.12 2.85 2.77 -52.49 -0.15 2.71 16 28 H 0.08 1.39 6.12 -51.93 -0.32 1.07 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.96 5.29 -51.93 -0.27 0.68 16 34 H 0.33 4.52 8.98 -39.29 -0.35 4.16 16 35 H 0.34 5.67 8.02 -39.29 -0.31 5.36 16 36 H 0.35 5.32 7.56 45.56 0.34 5.66 16 LS Contribution 284.76 15.07 4.29 4.29 Total: -1.00 -29.39 284.76 -4.76 -34.16 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -3.91 Total: 15.73 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -1.09 Total: -20.48 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.77 Total: -34.59 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.68 Total: -16.38 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.15 Total: 17.28 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.39 -4.76 -34.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309168353.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.194 kcal (2) G-P(sol) polarization free energy of solvation -29.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds