Wall clock time and date at job start Mon Mar 30 2020 03:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35959 * 117.00077 * 2 1 4 4 C 1.37818 * 120.02171 * 354.11042 * 3 2 1 5 5 C 1.40795 * 119.64734 * 179.97438 * 4 3 2 6 6 C 1.41203 * 120.16041 * 179.97438 * 5 4 3 7 7 H 1.07999 * 119.99793 * 329.91528 * 6 5 4 8 8 C 1.39869 * 119.99862 * 149.91483 * 6 5 4 9 9 N 1.30890 * 119.99613 * 165.72432 * 8 6 5 10 10 Si 1.86795 * 120.00484 * 345.72143 * 8 6 5 11 11 H 1.48503 * 109.47031 * 93.41640 * 10 8 6 12 12 H 1.48498 * 109.47470 * 213.41653 * 10 8 6 13 13 H 1.48504 * 109.47120 * 333.42083 * 10 8 6 14 14 C 1.40853 * 119.68189 * 0.02562 * 5 4 3 15 15 C 1.36456 * 120.02909 * 359.74153 * 14 5 4 16 16 C 1.50704 * 119.81766 * 180.27688 * 15 14 5 17 17 C 1.52996 * 109.47016 * 120.24066 * 16 15 14 18 18 C 1.53010 * 109.46645 * 240.24028 * 16 15 14 19 19 N 1.46894 * 109.47076 * 0.23567 * 16 15 14 20 20 C 1.39154 * 120.36164 * 0.51913 * 15 14 5 21 21 O 1.35739 * 119.83989 * 179.75947 * 20 15 14 22 22 H 1.08997 * 109.46830 * 184.73306 * 1 2 3 23 23 H 1.08994 * 109.46850 * 304.73017 * 1 2 3 24 24 H 1.08997 * 109.46728 * 64.73240 * 1 2 3 25 25 H 1.08004 * 120.17692 * 359.96125 * 4 3 2 26 26 H 0.96997 * 119.99985 * 179.97438 * 9 8 6 27 27 H 1.08002 * 119.98161 * 180.02562 * 14 5 4 28 28 H 1.08995 * 109.47668 * 60.00049 * 17 16 15 29 29 H 1.08998 * 109.46681 * 179.97438 * 17 16 15 30 30 H 1.08994 * 109.46979 * 299.99618 * 17 16 15 31 31 H 1.08993 * 109.47254 * 59.99941 * 18 16 15 32 32 H 1.09001 * 109.46826 * 180.02562 * 18 16 15 33 33 H 1.09002 * 109.47053 * 299.99798 * 18 16 15 34 34 H 1.00902 * 111.00131 * 176.04857 * 19 16 15 35 35 H 1.00900 * 111.00460 * 300.00023 * 19 16 15 36 36 H 0.96691 * 114.00201 * 269.72181 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.3018 2.3647 -0.1224 5 6 1.9491 3.6150 -0.1210 6 6 1.1969 4.8034 -0.2463 7 1 0.2716 4.8006 -0.8033 8 6 1.6502 5.9842 0.3510 9 7 1.1211 7.1330 0.0138 10 14 3.0103 5.9217 1.6297 11 1 4.3227 6.1319 0.9672 12 1 2.7895 6.9876 2.6398 13 1 3.0003 4.5960 2.2987 14 6 3.3507 3.6746 0.0051 15 6 4.0746 2.5247 0.1303 16 6 5.5734 2.5944 0.2711 17 6 5.9916 1.9530 1.5957 18 6 6.2301 1.8433 -0.8890 19 7 6.0024 3.9991 0.2502 20 6 3.4370 1.2879 0.1236 21 8 4.1679 0.1505 0.2440 22 1 -0.3633 -1.0242 0.0848 23 1 -0.3633 0.5854 0.8445 24 1 -0.3633 0.4387 -0.9293 25 1 0.2275 2.3096 -0.2192 26 1 1.4352 7.9518 0.4282 27 1 3.8522 4.6312 0.0072 28 1 5.6733 0.9107 1.6112 29 1 7.0756 2.0030 1.6973 30 1 5.5238 2.4880 2.4221 31 1 5.9321 2.3002 -1.8327 32 1 7.3141 1.8933 -0.7870 33 1 5.9117 0.8009 -0.8736 34 1 6.9961 4.0762 0.4075 35 1 5.7377 4.4453 -0.6152 36 1 4.4605 -0.2202 -0.5998 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309168353.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:01 Heat of formation + Delta-G solvation = -85.657317 kcal Electronic energy + Delta-G solvation = -19372.340010 eV Core-core repulsion = 16434.771048 eV Total energy + Delta-G solvation = -2937.568962 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.25362 -39.33731 -37.57055 -37.00952 -34.99784 -31.47163 -30.56356 -30.21248 -28.39634 -28.08211 -26.24346 -23.46701 -22.97194 -20.64960 -19.41591 -19.04153 -17.70365 -17.22241 -17.18585 -16.61860 -16.37776 -15.85187 -15.46575 -14.97034 -14.86627 -14.41534 -14.28298 -14.00432 -13.68389 -13.11470 -13.06895 -12.89248 -12.79665 -12.63837 -12.48356 -12.20208 -12.15264 -11.73415 -11.65038 -11.47384 -10.98364 -10.77355 -9.63783 -9.27450 -8.91161 -8.84370 -6.53405 0.62096 0.85075 1.41114 1.46053 1.55686 2.18028 2.46721 2.55869 3.37531 3.57583 3.80870 3.86514 4.22858 4.31222 4.36784 4.40186 4.58877 4.67110 4.73369 4.78025 4.79099 4.84526 5.01425 5.08113 5.12881 5.27161 5.30627 5.47840 5.57894 5.76185 5.79893 6.07394 6.24052 6.34212 6.51299 6.62913 6.71895 6.80139 7.24024 8.15312 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.016418 B = 0.011970 C = 0.007614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.991628 B = 2338.645089 C = 3676.638448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.329 6.329 3 C 0.127 3.873 4 C -0.303 4.303 5 C 0.094 3.906 6 C -0.476 4.476 7 H 0.057 0.943 8 C 0.052 3.948 9 N -0.846 5.846 10 Si 0.970 3.030 11 H -0.228 1.228 12 H -0.294 1.294 13 H -0.272 1.272 14 C -0.243 4.243 15 C -0.027 4.027 16 C 0.160 3.840 17 C -0.129 4.129 18 C -0.169 4.169 19 N -0.850 5.850 20 C -0.042 4.042 21 O -0.479 6.479 22 H 0.126 0.874 23 H 0.047 0.953 24 H 0.052 0.948 25 H 0.112 0.888 26 H 0.294 0.706 27 H 0.124 0.876 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.032 0.968 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.353 0.647 35 H 0.343 0.657 36 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.798 -9.232 -0.331 12.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.243 6.243 3 C 0.082 3.918 4 C -0.323 4.323 5 C 0.091 3.909 6 C -0.505 4.505 7 H 0.076 0.924 8 C -0.164 4.164 9 N -0.472 5.472 10 Si 0.795 3.205 11 H -0.151 1.151 12 H -0.222 1.222 13 H -0.197 1.197 14 C -0.263 4.263 15 C -0.028 4.028 16 C 0.068 3.932 17 C -0.187 4.187 18 C -0.227 4.227 19 N -0.382 5.382 20 C -0.088 4.088 21 O -0.288 6.288 22 H 0.144 0.856 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.130 0.870 26 H 0.105 0.895 27 H 0.141 0.859 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.167 0.833 35 H 0.156 0.844 36 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 8.240 -8.954 0.882 12.200 hybrid contribution -0.028 0.328 -1.008 1.061 sum 8.212 -8.625 -0.126 11.910 Atomic orbital electron populations 1.23174 0.77744 1.04767 1.01270 1.85970 1.22352 1.26860 1.89110 1.19342 0.92190 0.84019 0.96251 1.21073 0.98801 0.91980 1.20435 1.17749 0.92444 0.92515 0.88215 1.19400 1.07685 0.92700 1.30687 0.92428 1.26785 0.98149 0.93737 0.97692 1.69716 1.40103 0.99749 1.37630 0.85457 0.79635 0.77475 0.77919 1.15147 1.22181 1.19664 1.20785 0.92882 0.98315 1.14271 1.19474 0.95566 0.91314 0.96446 1.19503 0.89093 0.88219 0.96397 1.21797 1.01131 1.01091 0.94668 1.22538 1.01068 1.01939 0.97203 1.58871 1.21694 1.14670 1.43001 1.17061 0.85738 0.85840 1.20209 1.84844 1.70939 1.38948 1.34108 0.85618 0.93470 0.92975 0.87027 0.89522 0.85917 0.90650 0.90644 0.94831 0.93284 0.90421 0.90832 0.83253 0.84365 0.77370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 9.82 113.37 1.11 1.86 16 2 O -0.33 -12.71 10.28 -79.18 -0.81 -13.52 16 3 C 0.13 5.61 6.69 22.55 0.15 5.76 16 4 C -0.30 -14.55 8.77 22.80 0.20 -14.35 16 5 C 0.09 4.87 5.14 -21.29 -0.11 4.76 16 6 C -0.48 -26.91 9.58 23.39 0.22 -26.68 16 7 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 8 C 0.05 2.79 5.45 85.23 0.46 3.25 16 9 N -0.85 -46.49 13.93 21.82 0.30 -46.19 16 10 Si 0.97 44.93 24.41 68.60 1.67 46.61 16 11 H -0.23 -9.64 6.66 99.48 0.66 -8.97 16 12 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 13 H -0.27 -13.58 6.72 99.48 0.67 -12.91 16 14 C -0.24 -11.50 6.12 22.49 0.14 -11.36 16 15 C -0.03 -1.11 4.75 -20.06 -0.10 -1.20 16 16 C 0.16 5.10 0.94 2.79 0.00 5.10 16 17 C -0.13 -3.91 8.52 71.98 0.61 -3.30 16 18 C -0.17 -4.19 8.54 71.99 0.61 -3.58 16 19 N -0.85 -25.79 7.75 -154.52 -1.20 -26.99 16 20 C -0.04 -1.75 6.34 22.87 0.14 -1.60 16 21 O -0.48 -16.49 9.78 -76.73 -0.75 -17.24 16 22 H 0.13 2.72 8.14 -2.39 -0.02 2.71 16 23 H 0.05 1.45 7.65 -2.39 -0.02 1.43 16 24 H 0.05 1.52 7.68 -2.39 -0.02 1.50 16 25 H 0.11 5.13 6.32 -2.91 -0.02 5.12 16 26 H 0.29 14.58 8.30 -92.71 -0.77 13.81 16 27 H 0.12 5.70 2.77 -2.91 -0.01 5.69 16 28 H 0.07 2.34 6.12 -2.39 -0.01 2.33 16 29 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 1.73 5.29 -2.39 -0.01 1.71 16 34 H 0.35 8.22 8.98 -89.69 -0.81 7.41 16 35 H 0.34 10.52 8.02 -89.69 -0.72 9.80 16 36 H 0.37 9.79 7.56 -74.06 -0.56 9.23 16 Total: -1.00 -64.72 284.76 1.65 -63.07 By element: Atomic # 1 Polarization: 36.61 SS G_CDS: -1.03 Total: 35.59 kcal Atomic # 6 Polarization: -44.79 SS G_CDS: 3.46 Total: -41.33 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -0.89 Total: -73.18 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -1.56 Total: -30.76 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.67 Total: 46.61 kcal Total: -64.72 1.65 -63.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309168353.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.585 kcal (2) G-P(sol) polarization free energy of solvation -64.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds