Wall clock time and date at job start Mon Mar 30 2020 04:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00167 * 2 1 4 4 H 1.09007 * 109.46477 * 324.99652 * 3 2 1 5 5 C 1.53002 * 109.47216 * 84.99538 * 3 2 1 6 6 C 1.50694 * 109.47297 * 205.00043 * 3 2 1 7 7 C 1.38201 * 120.00489 * 339.72170 * 6 3 2 8 8 C 1.38288 * 120.16824 * 179.74660 * 7 6 3 9 9 C 1.38280 * 120.18352 * 0.50652 * 8 7 6 10 10 C 1.38528 * 120.00979 * 359.77157 * 9 8 7 11 11 O 1.35950 * 120.08116 * 179.97438 * 10 9 8 12 12 C 1.42899 * 117.00236 * 359.97438 * 11 10 9 13 13 C 1.38720 * 120.00803 * 159.99873 * 6 3 2 14 14 O 1.35798 * 120.09243 * 0.02562 * 13 6 3 15 15 C 1.34806 * 117.00010 * 89.99795 * 14 13 6 16 16 H 1.08000 * 120.00282 * 0.02562 * 15 14 13 17 17 C 1.38647 * 119.99563 * 179.97438 * 15 14 13 18 18 N 1.31566 * 120.00057 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99750 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47261 * 89.99730 * 19 17 15 21 21 H 1.48500 * 109.47075 * 210.00030 * 19 17 15 22 22 H 1.48502 * 109.46985 * 330.00180 * 19 17 15 23 23 H 1.09002 * 109.47401 * 300.00266 * 1 2 3 24 24 H 1.09001 * 109.46874 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46970 * 60.00412 * 1 2 3 26 26 H 1.00900 * 110.99922 * 123.94863 * 2 1 3 27 27 H 1.09006 * 109.46607 * 180.02562 * 5 3 2 28 28 H 1.08995 * 109.47126 * 299.99880 * 5 3 2 29 29 H 1.08998 * 109.47253 * 60.00420 * 5 3 2 30 30 H 1.08001 * 119.91520 * 359.97438 * 7 6 3 31 31 H 1.08002 * 119.90516 * 180.23439 * 8 7 6 32 32 H 1.08002 * 119.99312 * 179.74493 * 9 8 7 33 33 H 1.08999 * 109.47634 * 180.02562 * 12 11 10 34 34 H 1.09001 * 109.46952 * 300.00367 * 12 11 10 35 35 H 1.09002 * 109.47173 * 59.99723 * 12 11 10 36 36 H 0.97001 * 119.99847 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3397 2.0122 -0.5896 5 6 2.0608 1.8927 1.4370 6 6 3.3776 1.3789 -0.6004 7 6 4.1125 0.2099 -0.6581 8 6 5.3791 0.2118 -1.2131 9 6 5.9212 1.3854 -1.7039 10 6 5.1935 2.5627 -1.6447 11 8 5.7254 3.7174 -2.1264 12 6 7.0408 3.6446 -2.6798 13 6 3.9148 2.5604 -1.0902 14 8 3.1971 3.7115 -1.0291 15 6 3.3423 4.4652 0.0791 16 1 4.0069 4.1439 0.8674 17 6 2.6391 5.6533 0.2064 18 7 1.8307 6.0455 -0.7546 19 14 2.8409 6.6981 1.7417 20 1 3.9500 7.6648 1.5405 21 1 1.5809 7.4383 2.0058 22 1 3.1521 5.8216 2.8994 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 1.8306 -0.5261 0.7814 27 1 2.4511 2.9105 1.4369 28 1 1.0611 1.8873 1.8712 29 1 2.7165 1.2518 2.0265 30 1 3.6950 -0.7083 -0.2719 31 1 5.9481 -0.7050 -1.2594 32 1 6.9123 1.3842 -2.1330 33 1 7.3447 4.6325 -3.0259 34 1 7.7373 3.2973 -1.9166 35 1 7.0441 2.9485 -3.5185 36 1 1.3384 6.8765 -0.6654 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309186963.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:17 Heat of formation + Delta-G solvation = -30.580635 kcal Electronic energy + Delta-G solvation = -19115.217513 eV Core-core repulsion = 16180.036855 eV Total energy + Delta-G solvation = -2935.180658 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.73983 -37.70807 -36.27281 -35.47211 -31.89010 -30.78100 -28.97484 -28.28749 -26.65781 -24.81414 -24.67903 -22.54274 -21.35617 -19.89122 -17.89724 -17.22197 -16.10046 -15.86510 -15.29358 -15.06640 -14.42593 -14.14058 -14.01020 -13.79092 -13.22635 -13.09849 -12.58212 -12.38166 -11.88494 -11.84103 -11.50404 -11.42422 -11.35893 -11.29388 -10.84021 -10.76085 -10.49534 -10.35764 -10.29331 -9.84171 -9.44889 -8.17825 -8.09257 -7.82669 -7.24315 -6.00488 -3.66426 1.97402 2.15624 3.27450 3.31157 3.33746 3.92001 4.19961 4.45968 4.66685 5.28249 5.34207 5.35438 5.50904 5.53057 5.54208 5.57589 5.73363 5.82769 5.88699 5.96424 6.01151 6.04562 6.14677 6.19120 6.44236 6.59255 6.75337 6.92738 6.98946 7.06210 7.17369 7.40735 7.50292 7.56313 7.72607 8.13042 8.36826 9.42339 10.18725 11.19150 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.014145 B = 0.011065 C = 0.006916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.954458 B = 2529.807112 C = 4047.643136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.689 5.689 3 C 0.136 3.864 4 H 0.098 0.902 5 C -0.185 4.185 6 C -0.068 4.068 7 C -0.127 4.127 8 C -0.118 4.118 9 C -0.210 4.210 10 C 0.093 3.907 11 O -0.292 6.292 12 C 0.028 3.972 13 C 0.113 3.887 14 O -0.226 6.226 15 C -0.350 4.350 16 H 0.066 0.934 17 C 0.030 3.970 18 N -0.881 5.881 19 Si 0.922 3.078 20 H -0.279 1.279 21 H -0.282 1.282 22 H -0.274 1.274 23 H 0.021 0.979 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.334 0.666 27 H 0.101 0.899 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.122 0.878 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.092 0.908 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.572 -10.078 1.461 11.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.319 5.319 3 C 0.027 3.973 4 H 0.116 0.884 5 C -0.243 4.243 6 C -0.069 4.069 7 C -0.146 4.146 8 C -0.136 4.136 9 C -0.229 4.229 10 C 0.047 3.953 11 O -0.204 6.204 12 C -0.068 4.068 13 C 0.066 3.934 14 O -0.139 6.139 15 C -0.427 4.427 16 H 0.083 0.917 17 C -0.170 4.170 18 N -0.522 5.522 19 Si 0.748 3.252 20 H -0.205 1.205 21 H -0.208 1.208 22 H -0.199 1.199 23 H 0.039 0.961 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.151 0.849 27 H 0.119 0.881 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.140 0.860 31 H 0.131 0.869 32 H 0.135 0.865 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.266 -9.728 0.587 10.638 hybrid contribution 0.388 0.598 1.620 1.770 sum 4.655 -9.130 2.207 10.483 Atomic orbital electron populations 1.22169 0.88188 1.00946 1.00692 1.60551 1.07385 1.14718 1.49230 1.20155 0.93060 0.88175 0.95943 0.88426 1.22615 1.00741 1.05433 0.95557 1.19963 0.96077 0.92581 0.98311 1.20652 0.93991 0.97589 1.02341 1.20682 0.95915 0.96745 1.00256 1.20999 1.00705 0.92873 1.08274 1.19784 0.92915 0.85220 0.97421 1.86332 1.30396 1.29810 1.73889 1.22949 0.83548 1.02981 0.97316 1.18290 0.88315 0.89324 0.97463 1.83919 1.61215 1.28129 1.40589 1.20739 1.25853 1.02097 0.93979 0.91652 1.24933 0.97194 0.96551 0.98274 1.70024 1.27834 1.22487 1.31895 0.86018 0.77683 0.80250 0.81224 1.20534 1.20795 1.19855 0.96052 0.92070 0.91619 0.84866 0.88085 0.93535 0.93779 0.86044 0.86877 0.86451 0.88918 0.93530 0.93511 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.50 60.07 0.63 1.04 16 2 N -0.69 -10.82 5.45 -115.24 -0.63 -11.45 16 3 C 0.14 2.65 2.44 -68.87 -0.17 2.48 16 4 H 0.10 2.22 7.51 -51.92 -0.39 1.83 16 5 C -0.19 -3.50 9.12 37.16 0.34 -3.17 16 6 C -0.07 -1.42 5.10 -104.46 -0.53 -1.95 16 7 C -0.13 -2.25 9.32 -39.58 -0.37 -2.62 16 8 C -0.12 -1.95 10.04 -39.55 -0.40 -2.35 16 9 C -0.21 -3.76 9.04 -39.46 -0.36 -4.11 16 10 C 0.09 2.04 6.70 -39.05 -0.26 1.78 16 11 O -0.29 -6.50 10.28 -34.00 -0.35 -6.85 16 12 C 0.03 0.43 9.81 101.05 0.99 1.42 16 13 C 0.11 2.74 5.58 -38.98 -0.22 2.52 16 14 O -0.23 -6.49 8.71 -14.44 -0.13 -6.62 16 15 C -0.35 -9.94 7.31 30.88 0.23 -9.72 16 16 H 0.07 1.81 7.41 -52.49 -0.39 1.42 16 17 C 0.03 0.85 5.49 -17.51 -0.10 0.76 16 18 N -0.88 -26.96 13.67 55.48 0.76 -26.20 16 19 Si 0.92 21.73 29.55 -169.99 -5.02 16.70 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H 0.02 0.29 7.44 -51.93 -0.39 -0.10 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.97 8.06 -51.93 -0.42 0.55 16 26 H 0.33 4.58 8.08 -39.29 -0.32 4.26 16 27 H 0.10 2.27 4.95 -51.93 -0.26 2.02 16 28 H 0.05 0.80 7.45 -51.93 -0.39 0.41 16 29 H 0.04 0.74 8.13 -51.93 -0.42 0.32 16 30 H 0.12 1.86 6.83 -52.49 -0.36 1.51 16 31 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.12 1.74 6.30 -52.49 -0.33 1.41 16 33 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 35 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 299.57 15.07 4.51 4.51 Total: -1.00 -32.59 299.57 -5.92 -38.51 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -4.86 Total: 5.30 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -0.21 Total: -13.92 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.13 Total: -37.65 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.48 Total: -13.47 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.59 -5.92 -38.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309186963.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.932 kcal (2) G-P(sol) polarization free energy of solvation -32.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds