Wall clock time and date at job start Mon Mar 30 2020 04:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46900 * 111.00112 * 2 1 4 4 H 1.09000 * 109.46958 * 34.99786 * 3 2 1 5 5 C 1.53005 * 109.47135 * 275.00285 * 3 2 1 6 6 C 1.50695 * 109.47068 * 155.00281 * 3 2 1 7 7 C 1.38319 * 119.91730 * 39.97767 * 6 3 2 8 8 C 1.38240 * 120.18591 * 179.97438 * 7 6 3 9 9 C 1.38559 * 120.01298 * 0.02562 * 8 7 6 10 10 O 1.35948 * 120.08503 * 179.97438 * 9 8 7 11 11 C 1.42896 * 117.00162 * 0.02562 * 10 9 8 12 12 C 1.39338 * 119.82874 * 359.70618 * 9 8 7 13 13 O 1.35808 * 120.09504 * 180.29714 * 12 9 8 14 14 C 1.34804 * 117.00182 * 174.67560 * 13 12 9 15 15 H 1.08003 * 119.99785 * 5.05928 * 14 13 12 16 16 C 1.38637 * 119.99999 * 185.06211 * 14 13 12 17 17 N 1.31566 * 120.00391 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 120.00028 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47293 * 90.00003 * 18 16 14 20 20 H 1.48504 * 109.46932 * 210.00174 * 18 16 14 21 21 H 1.48501 * 109.46922 * 329.99874 * 18 16 14 22 22 C 1.38156 * 119.91332 * 220.00030 * 6 3 2 23 23 H 1.09000 * 109.47118 * 299.99678 * 1 2 3 24 24 H 1.09000 * 109.47887 * 59.99892 * 1 2 3 25 25 H 1.09004 * 109.47249 * 180.02562 * 1 2 3 26 26 H 1.00903 * 110.99652 * 236.04744 * 2 1 3 27 27 H 1.08998 * 109.47158 * 59.99634 * 5 3 2 28 28 H 1.08995 * 109.46819 * 180.02562 * 5 3 2 29 29 H 1.09002 * 109.46968 * 300.00122 * 5 3 2 30 30 H 1.08003 * 119.90711 * 359.97438 * 7 6 3 31 31 H 1.08004 * 119.99427 * 179.97438 * 8 7 6 32 32 H 1.09002 * 109.47253 * 179.97438 * 11 10 9 33 33 H 1.09002 * 109.47269 * 300.00079 * 11 10 9 34 34 H 1.09007 * 109.46862 * 60.00073 * 11 10 9 35 35 H 0.97000 * 120.00344 * 180.02562 * 17 16 14 36 36 H 1.08001 * 120.01096 * 0.02562 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3397 2.0123 0.5894 5 6 2.0607 1.8926 -1.4370 6 6 3.3776 1.3789 0.6004 7 6 4.2629 0.3575 0.3065 8 6 5.5323 0.3591 0.8538 9 6 5.9211 1.3853 1.6997 10 8 7.1690 1.3880 2.2392 11 6 8.0289 0.3014 1.8904 12 6 5.0317 2.4174 1.9917 13 8 5.4091 3.4290 2.8154 14 6 4.5420 4.4498 2.9681 15 1 3.5640 4.4003 2.5127 16 6 4.9058 5.5633 3.7097 17 7 4.0598 6.5598 3.8583 18 14 6.5978 5.6493 4.4967 19 1 7.5533 6.2766 3.5489 20 1 6.5258 6.4620 5.7376 21 1 7.0592 4.2776 4.8296 22 6 3.7571 2.4056 1.4433 23 1 -0.3633 0.5138 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8305 -0.5261 -0.7814 27 1 1.0610 1.8872 -1.8713 28 1 2.4518 2.9100 -1.4370 29 1 2.7164 1.2517 -2.0265 30 1 3.9615 -0.4434 -0.3523 31 1 6.2210 -0.4401 0.6226 32 1 8.9913 0.4258 2.3868 33 1 7.5748 -0.6375 2.2075 34 1 8.1766 0.2871 0.8105 35 1 4.3144 7.3390 4.3769 36 1 3.0635 3.2014 1.6716 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309198564.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:20 Heat of formation + Delta-G solvation = -56.190640 kcal Electronic energy + Delta-G solvation = -18499.833656 eV Core-core repulsion = 15563.542464 eV Total energy + Delta-G solvation = -2936.291191 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.36985 -39.30937 -38.97165 -36.57546 -34.42193 -32.18792 -30.99483 -29.78236 -27.88164 -27.23968 -25.90100 -24.03673 -23.09361 -21.46595 -19.84294 -19.38125 -17.92813 -17.21104 -16.78500 -16.62268 -16.01136 -15.54052 -15.47098 -15.38757 -15.25641 -14.98209 -14.19690 -14.08286 -13.84115 -13.66961 -13.25199 -13.12356 -12.91787 -12.85672 -12.54584 -12.34986 -12.21884 -11.88507 -11.81284 -11.63095 -11.37158 -10.89253 -9.51063 -9.30819 -8.66742 -8.48630 -6.17437 0.50938 0.67890 1.29210 1.33871 1.53129 2.30132 2.57020 2.74820 3.02541 3.10830 3.37197 3.89183 4.00129 4.20539 4.28937 4.32649 4.47552 4.47941 4.56816 4.61413 4.66137 4.70269 4.76116 4.80597 4.91304 5.01611 5.06957 5.20609 5.35257 5.48731 5.61393 5.74427 5.90928 6.09158 6.11762 6.56577 6.64489 6.86799 7.65730 8.63162 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.018521 B = 0.007365 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.443145 B = 3801.075707 C = 5061.187749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.690 5.690 3 C 0.130 3.870 4 H 0.065 0.935 5 C -0.167 4.167 6 C -0.062 4.062 7 C -0.121 4.121 8 C -0.159 4.159 9 C 0.048 3.952 10 O -0.346 6.346 11 C 0.020 3.980 12 C 0.088 3.912 13 O -0.242 6.242 14 C -0.395 4.395 15 H 0.082 0.918 16 C 0.012 3.988 17 N -0.923 5.923 18 Si 0.966 3.034 19 H -0.267 1.267 20 H -0.264 1.264 21 H -0.270 1.270 22 C -0.198 4.198 23 H 0.051 0.949 24 H 0.032 0.968 25 H 0.084 0.916 26 H 0.352 0.648 27 H 0.072 0.928 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.152 0.848 31 H 0.163 0.837 32 H 0.110 0.890 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.284 0.716 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.079 -15.363 -10.359 18.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.322 5.322 3 C 0.020 3.980 4 H 0.083 0.917 5 C -0.226 4.226 6 C -0.063 4.063 7 C -0.139 4.139 8 C -0.177 4.177 9 C 0.003 3.997 10 O -0.261 6.261 11 C -0.074 4.074 12 C 0.039 3.961 13 O -0.150 6.150 14 C -0.471 4.471 15 H 0.099 0.901 16 C -0.186 4.186 17 N -0.565 5.565 18 Si 0.789 3.211 19 H -0.192 1.192 20 H -0.189 1.189 21 H -0.194 1.194 22 C -0.218 4.218 23 H 0.070 0.930 24 H 0.051 0.949 25 H 0.103 0.897 26 H 0.171 0.829 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.170 0.830 31 H 0.180 0.820 32 H 0.128 0.872 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.196 -15.084 -9.334 17.739 hybrid contribution 0.062 0.906 -0.358 0.976 sum 0.259 -14.178 -9.692 17.176 Atomic orbital electron populations 1.22251 0.86744 1.02796 1.00369 1.60420 1.08618 1.12466 1.50696 1.20272 0.91557 0.90403 0.95750 0.91666 1.22375 1.02698 1.01902 0.95638 1.19602 0.96343 0.93857 0.96523 1.20674 0.92111 0.98840 1.02301 1.21213 0.99029 0.98112 0.99380 1.18482 0.85153 0.96100 0.99956 1.86117 1.22195 1.48952 1.68822 1.23298 0.93628 0.88552 1.01962 1.18970 0.93373 0.89557 0.94206 1.83602 1.44374 1.28335 1.58680 1.20724 0.96837 0.95347 1.34189 0.90102 1.25169 1.02770 0.93447 0.97230 1.69726 1.37412 1.07753 1.41579 0.85282 0.78739 0.78645 0.78451 1.19189 1.18896 1.19426 1.20882 0.95405 1.02052 1.03494 0.93003 0.94903 0.89694 0.82869 0.90937 0.93280 0.90749 0.83025 0.81991 0.87184 0.91494 0.91393 0.90664 0.87151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.50 127.69 1.34 1.86 16 2 N -0.69 -15.72 6.05 -518.54 -3.14 -18.86 16 3 C 0.13 3.69 2.79 44.17 0.12 3.81 16 4 H 0.07 2.09 7.66 -2.39 -0.02 2.07 16 5 C -0.17 -3.91 9.14 71.98 0.66 -3.25 16 6 C -0.06 -2.20 4.96 -19.87 -0.10 -2.30 16 7 C -0.12 -3.62 9.32 22.29 0.21 -3.41 16 8 C -0.16 -5.04 9.04 22.35 0.20 -4.84 16 9 C 0.05 2.02 6.70 22.61 0.15 2.18 16 10 O -0.35 -14.04 10.28 -79.17 -0.81 -14.86 16 11 C 0.02 0.50 9.81 113.37 1.11 1.61 16 12 C 0.09 4.42 6.66 22.66 0.15 4.57 16 13 O -0.24 -14.20 8.37 -9.33 -0.08 -14.28 16 14 C -0.39 -24.41 9.95 67.92 0.68 -23.73 16 15 H 0.08 5.17 5.44 -2.91 -0.02 5.16 16 16 C 0.01 0.72 5.49 84.83 0.47 1.18 16 17 N -0.92 -56.83 13.96 21.61 0.30 -56.53 16 18 Si 0.97 48.42 28.62 68.60 1.96 50.38 16 19 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 20 H -0.26 -12.20 7.11 99.48 0.71 -11.50 16 21 H -0.27 -13.93 7.11 99.48 0.71 -13.23 16 22 C -0.20 -9.11 8.78 22.38 0.20 -8.92 16 23 H 0.05 1.12 8.06 -2.39 -0.02 1.10 16 24 H 0.03 0.54 7.44 -2.39 -0.02 0.52 16 25 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.35 6.24 7.89 -89.69 -0.71 5.53 16 27 H 0.07 1.40 7.45 -2.39 -0.02 1.38 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 30 H 0.15 3.34 7.23 -2.91 -0.02 3.31 16 31 H 0.16 3.72 6.30 -2.91 -0.02 3.71 16 32 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.07 1.40 7.66 -2.39 -0.02 1.39 16 34 H 0.07 1.41 7.67 -2.38 -0.02 1.39 16 35 H 0.28 16.02 8.31 -92.71 -0.77 15.25 16 36 H 0.11 5.56 5.61 -2.91 -0.02 5.55 16 Total: -1.00 -73.44 301.01 3.80 -69.63 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.38 Total: 15.75 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: 5.19 Total: -31.24 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -2.84 Total: -75.39 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.89 Total: -29.13 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 1.96 Total: 50.38 kcal Total: -73.44 3.80 -69.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309198564.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.443 kcal (2) G-P(sol) polarization free energy of solvation -73.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds