Wall clock time and date at job start Mon Mar 30 2020 04:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 110.99857 * 2 1 4 4 H 1.08998 * 109.46819 * 35.00173 * 3 2 1 5 5 C 1.52996 * 109.47081 * 155.00110 * 3 2 1 6 6 C 1.50696 * 109.47314 * 275.00106 * 3 2 1 7 7 C 1.38071 * 120.00485 * 340.00099 * 6 3 2 8 8 C 1.38750 * 120.01039 * 179.97438 * 7 6 3 9 9 O 1.35943 * 119.98489 * 180.02562 * 8 7 6 10 10 C 1.42897 * 116.99774 * 180.02562 * 9 8 7 11 11 C 1.38787 * 120.02855 * 0.02562 * 8 7 6 12 12 C 1.38031 * 120.01505 * 0.02562 * 11 8 7 13 13 C 1.38861 * 120.00720 * 159.72081 * 6 3 2 14 14 O 1.35799 * 120.01059 * 0.03081 * 13 6 3 15 15 C 1.34816 * 116.99838 * 174.13799 * 14 13 6 16 16 H 1.08002 * 119.99847 * 5.06450 * 15 14 13 17 17 C 1.38627 * 119.99910 * 185.06154 * 15 14 13 18 18 N 1.31576 * 120.00064 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99805 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47638 * 59.99813 * 19 17 15 21 21 H 1.48509 * 109.47010 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47145 * 299.99549 * 19 17 15 23 23 H 1.09004 * 109.47109 * 299.99479 * 1 2 3 24 24 H 1.09007 * 109.46674 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47230 * 60.00027 * 1 2 3 26 26 H 1.00892 * 111.00284 * 123.95664 * 2 1 3 27 27 H 1.08999 * 109.47057 * 59.99801 * 5 3 2 28 28 H 1.08997 * 109.47232 * 180.02562 * 5 3 2 29 29 H 1.09002 * 109.47181 * 300.00187 * 5 3 2 30 30 H 1.07994 * 119.99632 * 0.02562 * 7 6 3 31 31 H 1.09005 * 109.47438 * 180.02562 * 10 9 8 32 32 H 1.09000 * 109.47341 * 300.00093 * 10 9 8 33 33 H 1.08996 * 109.47688 * 60.00445 * 10 9 8 34 34 H 1.08004 * 119.99696 * 179.97438 * 11 8 7 35 35 H 1.08002 * 120.01107 * 180.02562 * 12 11 8 36 36 H 0.96998 * 119.99802 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3397 2.0123 0.5895 5 6 3.3987 1.3791 0.6096 6 6 2.0598 1.8849 -1.4153 7 6 2.0596 0.9969 -2.4726 8 6 2.1183 1.4695 -3.7758 9 8 2.1175 0.5947 -4.8164 10 6 2.1804 1.1507 -6.1313 11 6 2.1779 2.8348 -4.0175 12 6 2.1793 3.7235 -2.9613 13 6 2.1136 3.2513 -1.6567 14 8 2.1087 4.1253 -0.6173 15 6 2.2850 5.4288 -0.9129 16 1 2.3397 5.7460 -1.9439 17 6 2.3959 6.3618 0.1063 18 7 2.3287 5.9753 1.3622 19 14 2.6394 8.1680 -0.3034 20 1 1.4900 8.6522 -1.1094 21 1 2.7285 8.9531 0.9541 22 1 3.8939 8.3346 -1.0803 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3633 0.5138 -0.8899 26 1 1.8306 -0.5261 0.7813 27 1 4.0544 0.7382 0.0201 28 1 3.7891 2.3968 0.6100 29 1 3.3521 1.0078 1.6333 30 1 2.0128 -0.0657 -2.2852 31 1 2.1722 0.3462 -6.8668 32 1 1.3194 1.7992 -6.2931 33 1 3.0971 1.7307 -6.2372 34 1 2.2240 3.2021 -5.0321 35 1 2.2253 4.7860 -3.1494 36 1 2.4059 6.6282 2.0754 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309209541.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:27 Heat of formation + Delta-G solvation = -36.089338 kcal Electronic energy + Delta-G solvation = -18737.846995 eV Core-core repulsion = 15802.427461 eV Total energy + Delta-G solvation = -2935.419533 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.63257 -38.09641 -36.64845 -34.89602 -32.19000 -30.98865 -29.46891 -28.06223 -26.52088 -25.24182 -24.33966 -22.81112 -21.29682 -19.82120 -17.94423 -17.22694 -16.49755 -15.58932 -15.19870 -14.92399 -14.49258 -14.27611 -14.22746 -13.64975 -13.43061 -13.17050 -12.54454 -12.50745 -12.06173 -11.73349 -11.70051 -11.58935 -11.52731 -11.12548 -11.02845 -10.95071 -10.68983 -10.54288 -10.29694 -9.91636 -9.25917 -8.70804 -8.11764 -7.98605 -6.79629 -6.40848 -3.98087 2.14322 2.45566 3.14248 3.15199 3.17558 3.90601 3.99919 4.55203 4.63010 5.11063 5.33849 5.37151 5.44138 5.45235 5.62641 5.69651 5.76709 5.79267 5.88087 5.94423 6.03220 6.22873 6.29310 6.39599 6.40763 6.53118 6.83609 6.88379 7.05110 7.14422 7.26288 7.34520 7.43795 7.66521 7.80637 8.03848 8.16934 9.05552 9.76589 10.77264 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.018041 B = 0.007712 C = 0.005744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.640455 B = 3630.008060 C = 4873.618630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.690 5.690 3 C 0.140 3.860 4 H 0.060 0.940 5 C -0.143 4.143 6 C -0.115 4.115 7 C -0.075 4.075 8 C 0.023 3.977 9 O -0.327 6.327 10 C 0.034 3.966 11 C -0.157 4.157 12 C -0.204 4.204 13 C 0.129 3.871 14 O -0.178 6.178 15 C -0.390 4.390 16 H 0.088 0.912 17 C 0.040 3.960 18 N -0.865 5.865 19 Si 0.937 3.063 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.271 1.271 23 H 0.020 0.980 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.337 0.663 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.047 0.953 30 H 0.135 0.865 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.111 0.889 35 H 0.129 0.871 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.657 -7.649 -6.167 9.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.320 5.320 3 C 0.031 3.969 4 H 0.078 0.922 5 C -0.201 4.201 6 C -0.117 4.117 7 C -0.094 4.094 8 C -0.020 4.020 9 O -0.242 6.242 10 C -0.061 4.061 11 C -0.176 4.176 12 C -0.224 4.224 13 C 0.076 3.924 14 O -0.082 6.082 15 C -0.467 4.467 16 H 0.105 0.895 17 C -0.164 4.164 18 N -0.501 5.501 19 Si 0.762 3.238 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.196 1.196 23 H 0.038 0.962 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.154 0.846 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.066 0.934 30 H 0.153 0.847 31 H 0.106 0.894 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.129 0.871 35 H 0.146 0.854 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.640 -7.837 -6.353 10.109 hybrid contribution -0.091 1.639 0.308 1.670 sum -0.730 -6.198 -6.045 8.689 Atomic orbital electron populations 1.22186 0.88222 1.00854 1.00747 1.60381 1.07552 1.14843 1.49257 1.20060 0.96212 0.87723 0.92862 0.92195 1.21857 0.95925 1.03473 0.98798 1.18656 1.08976 0.89503 0.94554 1.19896 1.01600 1.00115 0.87775 1.18677 1.07673 0.88092 0.87576 1.85961 1.90600 1.34297 1.13350 1.22813 1.00614 0.99702 0.83013 1.20860 1.05922 0.92156 0.98653 1.20913 1.09623 1.00011 0.91804 1.19124 0.95542 0.89773 0.87927 1.83973 1.78919 1.16651 1.28682 1.21207 1.51517 0.79791 0.94137 0.89486 1.25191 0.96842 0.99803 0.94535 1.70023 1.46604 1.34914 0.98577 0.85853 0.79117 0.80873 0.78003 1.19672 1.20352 1.19631 0.96155 0.92102 0.91588 0.84566 0.92564 0.90587 0.93383 0.84683 0.89415 0.93566 0.93524 0.87092 0.85351 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.48 60.07 0.63 1.07 16 2 N -0.69 -10.88 5.27 -115.24 -0.61 -11.49 16 3 C 0.14 2.70 2.50 -68.87 -0.17 2.53 16 4 H 0.06 1.32 7.50 -51.93 -0.39 0.93 16 5 C -0.14 -2.59 9.16 37.16 0.34 -2.25 16 6 C -0.11 -2.45 4.86 -104.45 -0.51 -2.96 16 7 C -0.08 -1.49 9.25 -39.45 -0.37 -1.86 16 8 C 0.02 0.45 6.69 -39.19 -0.26 0.19 16 9 O -0.33 -5.70 10.50 -19.56 -0.21 -5.91 16 10 C 0.03 0.44 9.81 101.05 0.99 1.43 16 11 C -0.16 -3.05 9.03 -39.45 -0.36 -3.41 16 12 C -0.20 -4.53 9.16 -39.41 -0.36 -4.89 16 13 C 0.13 3.11 6.62 -39.10 -0.26 2.85 16 14 O -0.18 -4.90 8.92 -0.06 0.00 -4.90 16 15 C -0.39 -10.75 9.48 30.88 0.29 -10.46 16 16 H 0.09 2.24 5.20 -52.49 -0.27 1.97 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 18 N -0.87 -24.90 13.67 55.48 0.76 -24.14 16 19 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 16 20 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 H 0.02 0.29 8.06 -51.93 -0.42 -0.12 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.07 1.07 8.00 -51.93 -0.42 0.66 16 26 H 0.34 4.56 8.43 -39.30 -0.33 4.23 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.61 8.08 -51.93 -0.42 1.19 16 29 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 30 H 0.14 2.55 7.13 -52.49 -0.37 2.18 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 33 H 0.05 0.56 7.66 -51.93 -0.40 0.17 16 34 H 0.11 1.83 6.29 -52.48 -0.33 1.50 16 35 H 0.13 2.82 5.63 -52.49 -0.30 2.53 16 36 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 302.27 15.07 4.56 4.56 Total: -1.00 -30.17 302.27 -5.51 -35.68 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -4.87 Total: 7.51 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -0.12 Total: -16.77 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.15 Total: -35.63 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -0.21 Total: -10.81 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.17 -5.51 -35.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309209541.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.408 kcal (2) G-P(sol) polarization free energy of solvation -30.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds