Wall clock time and date at job start Mon Mar 30 2020 04:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46853 * 2 1 4 4 H 1.08996 * 109.46778 * 55.00464 * 3 2 1 5 5 N 1.46899 * 109.46999 * 295.00063 * 3 2 1 6 6 C 1.50693 * 109.47011 * 175.00223 * 3 2 1 7 7 C 1.36495 * 119.81903 * 100.00017 * 6 3 2 8 8 C 1.40823 * 120.02826 * 180.02562 * 7 6 3 9 9 C 1.41200 * 120.15398 * 179.97438 * 8 7 6 10 10 H 1.08005 * 120.00241 * 24.57587 * 9 8 7 11 11 C 1.39870 * 120.00075 * 204.57008 * 9 8 7 12 12 N 1.30890 * 119.99689 * 17.94983 * 11 9 8 13 13 Si 1.86798 * 120.00344 * 197.94230 * 11 9 8 14 14 H 1.48504 * 109.47160 * 90.00123 * 13 11 9 15 15 H 1.48496 * 109.47434 * 210.00568 * 13 11 9 16 16 H 1.48500 * 109.47121 * 330.00492 * 13 11 9 17 17 C 1.40820 * 119.68462 * 359.97438 * 8 7 6 18 18 C 1.37777 * 119.64693 * 0.02562 * 17 8 7 19 19 O 1.35967 * 120.02009 * 179.97438 * 18 17 8 20 20 C 1.42895 * 117.00050 * 359.97438 * 19 18 17 21 21 C 1.39118 * 119.82153 * 280.23458 * 6 3 2 22 22 O 1.35738 * 119.83810 * 359.97438 * 21 6 3 23 23 H 1.08997 * 109.47431 * 59.99571 * 1 2 3 24 24 H 1.09003 * 109.47001 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46661 * 299.99461 * 1 2 3 26 26 H 1.08996 * 109.46797 * 240.00641 * 2 1 3 27 27 H 1.09000 * 109.47337 * 119.99905 * 2 1 3 28 28 H 1.00899 * 110.99451 * 176.04179 * 5 3 2 29 29 H 1.00893 * 111.00087 * 300.00323 * 5 3 2 30 30 H 1.08003 * 119.98793 * 359.97438 * 7 6 3 31 31 H 0.97004 * 119.99684 * 180.02562 * 12 11 9 32 32 H 1.08006 * 120.17599 * 180.02562 * 17 8 7 33 33 H 1.08996 * 109.47173 * 299.99926 * 20 19 18 34 34 H 1.08994 * 109.47291 * 60.00525 * 20 19 18 35 35 H 1.09006 * 109.47048 * 180.02562 * 20 19 18 36 36 H 0.96691 * 114.00295 * 270.23169 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6513 2.0993 -1.2552 6 6 3.5418 1.4444 0.1238 7 6 4.3143 1.6170 -0.9883 8 6 5.7182 1.6189 -0.8777 9 6 6.5198 1.7966 -2.0264 10 1 6.1214 2.3103 -2.8889 11 6 7.8301 1.3075 -2.0474 12 7 8.2038 0.4002 -1.1812 13 14 9.0464 1.9488 -3.3117 14 1 9.7598 3.1280 -2.7586 15 1 10.0288 0.8842 -3.6380 16 1 8.3176 2.3443 -4.5436 17 6 6.3187 1.4428 0.3838 18 6 5.5263 1.2697 1.4975 19 8 6.0980 1.0985 2.7192 20 6 7.5259 1.1082 2.7743 21 6 4.1335 1.2654 1.3701 22 8 3.3552 1.0905 2.4683 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.9202 3.0718 -1.2527 29 1 2.0421 1.6180 -2.0512 30 1 3.8487 1.7512 -1.9535 31 1 9.1126 0.0612 -1.1955 32 1 7.3946 1.4433 0.4777 33 1 7.9190 0.3046 2.1518 34 1 7.8971 2.0657 2.4090 35 1 7.8507 0.9614 3.8045 36 1 3.1153 1.9135 2.9155 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309530100.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:17 Heat of formation + Delta-G solvation = -76.914820 kcal Electronic energy + Delta-G solvation = -18870.651968 eV Core-core repulsion = 15933.462109 eV Total energy + Delta-G solvation = -2937.189859 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.25529 -37.41299 -35.77087 -35.28393 -33.07993 -30.81688 -29.18118 -28.47353 -26.71796 -25.27159 -24.16643 -21.30015 -20.84241 -19.58901 -17.54512 -17.19898 -16.08373 -15.82148 -14.98233 -14.88173 -14.84547 -14.24406 -14.05986 -13.78044 -13.16140 -12.94695 -12.63267 -12.07654 -11.82598 -11.79447 -11.46076 -11.32583 -11.06565 -10.92045 -10.66379 -10.60605 -10.40058 -10.29180 -9.85470 -9.82586 -9.40465 -9.11672 -8.24381 -7.37024 -7.09132 -6.83652 -4.52824 2.55777 2.82500 2.97166 3.00412 3.05215 3.79653 4.23798 4.39357 5.14288 5.30916 5.44154 5.61325 5.68662 5.72392 5.81131 5.89501 6.05995 6.11167 6.16433 6.35789 6.45119 6.53135 6.66437 6.74114 6.81509 6.89187 6.99563 7.11418 7.41562 7.57647 7.76006 7.79867 7.92134 7.95347 8.24143 8.43179 8.62500 8.71205 9.01747 10.00624 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.019940 B = 0.007837 C = 0.005964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.897804 B = 3571.839007 C = 4694.024862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C 0.144 3.856 4 H 0.076 0.924 5 N -0.841 5.841 6 C -0.080 4.080 7 C -0.239 4.239 8 C 0.136 3.864 9 C -0.456 4.456 10 H 0.081 0.919 11 C 0.076 3.924 12 N -0.787 5.787 13 Si 0.910 3.090 14 H -0.267 1.267 15 H -0.277 1.277 16 H -0.261 1.261 17 C -0.247 4.247 18 C 0.119 3.881 19 O -0.326 6.326 20 C 0.035 3.965 21 C -0.054 4.054 22 O -0.486 6.486 23 H 0.061 0.939 24 H 0.041 0.959 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.338 0.662 29 H 0.340 0.660 30 H 0.097 0.903 31 H 0.282 0.718 32 H 0.131 0.869 33 H 0.055 0.945 34 H 0.044 0.956 35 H 0.081 0.919 36 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.403 2.199 1.887 4.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 C 0.032 3.968 4 H 0.094 0.906 5 N -0.370 5.370 6 C -0.083 4.083 7 C -0.258 4.258 8 C 0.133 3.867 9 C -0.485 4.485 10 H 0.099 0.901 11 C -0.142 4.142 12 N -0.412 5.412 13 Si 0.734 3.266 14 H -0.192 1.192 15 H -0.202 1.202 16 H -0.184 1.184 17 C -0.267 4.267 18 C 0.074 3.926 19 O -0.240 6.240 20 C -0.061 4.061 21 C -0.100 4.100 22 O -0.292 6.292 23 H 0.080 0.920 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.149 0.851 29 H 0.153 0.847 30 H 0.115 0.885 31 H 0.093 0.907 32 H 0.149 0.851 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -4.011 1.207 2.177 4.721 hybrid contribution 2.136 0.853 -0.689 2.401 sum -1.875 2.060 1.488 3.158 Atomic orbital electron populations 1.21670 0.96041 1.00168 1.01848 1.21448 0.95281 0.95470 1.02163 1.20116 0.89459 0.95143 0.92046 0.90588 1.59164 1.66454 1.06786 1.04548 1.20011 0.95727 0.99765 0.92770 1.20385 0.93775 1.15666 0.96024 1.17357 0.90816 0.86307 0.92236 1.19567 0.96346 1.32130 1.00447 0.90114 1.25958 0.99127 0.92724 0.96432 1.69864 1.19293 1.19390 1.32637 0.86281 0.79803 0.79455 0.81081 1.19175 1.20172 1.18441 1.21335 0.99717 1.14487 0.91133 1.19375 0.91739 0.97534 0.83909 1.85961 1.20804 1.88287 1.28911 1.22809 0.80283 1.01360 1.01600 1.17016 0.85162 1.21958 0.85877 1.84900 1.69990 1.32988 1.41300 0.92020 0.93974 0.93488 0.92556 0.91216 0.85071 0.84674 0.88495 0.90717 0.85101 0.92605 0.93707 0.90048 0.80223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.80 37.16 0.36 -1.65 16 2 C -0.11 -1.82 5.56 -26.73 -0.15 -1.97 16 3 C 0.14 2.57 2.62 -68.86 -0.18 2.39 16 4 H 0.08 1.34 7.84 -51.93 -0.41 0.93 16 5 N -0.84 -13.33 8.15 -5.65 -0.05 -13.38 16 6 C -0.08 -1.74 5.05 -104.93 -0.53 -2.27 16 7 C -0.24 -5.52 8.93 -39.23 -0.35 -5.87 16 8 C 0.14 3.48 5.57 -106.82 -0.60 2.89 16 9 C -0.46 -11.54 9.04 -37.85 -0.34 -11.89 16 10 H 0.08 1.95 7.91 -52.48 -0.41 1.54 16 11 C 0.08 1.84 5.13 -17.34 -0.09 1.75 16 12 N -0.79 -19.53 10.96 55.54 0.61 -18.92 16 13 Si 0.91 17.86 29.60 -169.99 -5.03 12.83 16 14 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 15 H -0.28 -5.34 7.11 56.52 0.40 -4.93 16 16 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 17 C -0.25 -6.29 7.67 -38.77 -0.30 -6.58 16 18 C 0.12 2.92 6.70 -39.14 -0.26 2.65 16 19 O -0.33 -7.35 10.28 -34.15 -0.35 -7.70 16 20 C 0.04 0.65 9.81 101.05 0.99 1.64 16 21 C -0.05 -1.25 6.71 -38.65 -0.26 -1.51 16 22 O -0.49 -10.13 12.33 -33.44 -0.41 -10.54 16 23 H 0.06 0.88 7.75 -51.93 -0.40 0.48 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.07 1.31 7.99 -51.93 -0.41 0.90 16 28 H 0.34 5.11 9.05 -39.29 -0.36 4.75 16 29 H 0.34 5.44 7.27 -39.30 -0.29 5.16 16 30 H 0.10 2.07 6.18 -52.48 -0.32 1.74 16 31 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 32 H 0.13 3.36 4.39 -52.48 -0.23 3.13 16 33 H 0.06 1.08 7.66 -51.93 -0.40 0.69 16 34 H 0.04 0.80 7.66 -51.93 -0.40 0.41 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.35 5.80 9.06 45.56 0.41 6.21 16 LS Contribution 298.86 15.07 4.50 4.50 Total: -1.00 -27.89 298.86 -6.47 -34.36 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -4.04 Total: 19.27 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -1.70 Total: -20.42 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.56 Total: -32.30 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.76 Total: -18.24 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.89 -6.47 -34.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309530100.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.556 kcal (2) G-P(sol) polarization free energy of solvation -27.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds