Wall clock time and date at job start Mon Mar 30 2020 04:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46853 * 2 1 4 4 H 1.08996 * 109.46778 * 55.00464 * 3 2 1 5 5 N 1.46899 * 109.46999 * 295.00063 * 3 2 1 6 6 C 1.50693 * 109.47011 * 175.00223 * 3 2 1 7 7 C 1.36495 * 119.81903 * 100.00017 * 6 3 2 8 8 C 1.40823 * 120.02826 * 180.02562 * 7 6 3 9 9 C 1.41200 * 120.15398 * 179.97438 * 8 7 6 10 10 H 1.08005 * 120.00241 * 24.57587 * 9 8 7 11 11 C 1.39870 * 120.00075 * 204.57008 * 9 8 7 12 12 N 1.30890 * 119.99689 * 17.94983 * 11 9 8 13 13 Si 1.86798 * 120.00344 * 197.94230 * 11 9 8 14 14 H 1.48504 * 109.47160 * 90.00123 * 13 11 9 15 15 H 1.48496 * 109.47434 * 210.00568 * 13 11 9 16 16 H 1.48500 * 109.47121 * 330.00492 * 13 11 9 17 17 C 1.40820 * 119.68462 * 359.97438 * 8 7 6 18 18 C 1.37777 * 119.64693 * 0.02562 * 17 8 7 19 19 O 1.35967 * 120.02009 * 179.97438 * 18 17 8 20 20 C 1.42895 * 117.00050 * 359.97438 * 19 18 17 21 21 C 1.39118 * 119.82153 * 280.23458 * 6 3 2 22 22 O 1.35738 * 119.83810 * 359.97438 * 21 6 3 23 23 H 1.08997 * 109.47431 * 59.99571 * 1 2 3 24 24 H 1.09003 * 109.47001 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46661 * 299.99461 * 1 2 3 26 26 H 1.08996 * 109.46797 * 240.00641 * 2 1 3 27 27 H 1.09000 * 109.47337 * 119.99905 * 2 1 3 28 28 H 1.00899 * 110.99451 * 176.04179 * 5 3 2 29 29 H 1.00893 * 111.00087 * 300.00323 * 5 3 2 30 30 H 1.08003 * 119.98793 * 359.97438 * 7 6 3 31 31 H 0.97004 * 119.99684 * 180.02562 * 12 11 9 32 32 H 1.08006 * 120.17599 * 180.02562 * 17 8 7 33 33 H 1.08996 * 109.47173 * 299.99926 * 20 19 18 34 34 H 1.08994 * 109.47291 * 60.00525 * 20 19 18 35 35 H 1.09006 * 109.47048 * 180.02562 * 20 19 18 36 36 H 0.96691 * 114.00295 * 270.23169 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6513 2.0993 -1.2552 6 6 3.5418 1.4444 0.1238 7 6 4.3143 1.6170 -0.9883 8 6 5.7182 1.6189 -0.8777 9 6 6.5198 1.7966 -2.0264 10 1 6.1214 2.3103 -2.8889 11 6 7.8301 1.3075 -2.0474 12 7 8.2038 0.4002 -1.1812 13 14 9.0464 1.9488 -3.3117 14 1 9.7598 3.1280 -2.7586 15 1 10.0288 0.8842 -3.6380 16 1 8.3176 2.3443 -4.5436 17 6 6.3187 1.4428 0.3838 18 6 5.5263 1.2697 1.4975 19 8 6.0980 1.0985 2.7192 20 6 7.5259 1.1082 2.7743 21 6 4.1335 1.2654 1.3701 22 8 3.3552 1.0905 2.4683 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.9202 3.0718 -1.2527 29 1 2.0421 1.6180 -2.0512 30 1 3.8487 1.7512 -1.9535 31 1 9.1126 0.0612 -1.1955 32 1 7.3946 1.4433 0.4777 33 1 7.9190 0.3046 2.1518 34 1 7.8971 2.0657 2.4090 35 1 7.8507 0.9614 3.8045 36 1 3.1153 1.9135 2.9155 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309530100.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:16 Heat of formation + Delta-G solvation = -96.182569 kcal Electronic energy + Delta-G solvation = -18871.487480 eV Core-core repulsion = 15933.462109 eV Total energy + Delta-G solvation = -2938.025371 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.99060 -39.04987 -37.48829 -36.88383 -34.83273 -32.15204 -30.96770 -30.14155 -28.36287 -26.94221 -25.71140 -22.84952 -22.61583 -21.19721 -19.28317 -18.94378 -17.85629 -17.33749 -16.62977 -16.57717 -16.45115 -15.84870 -15.57372 -15.33290 -14.75940 -14.57066 -13.95615 -13.68943 -13.44998 -13.30835 -13.11198 -12.90852 -12.64546 -12.42099 -12.23544 -12.10964 -11.95219 -11.71589 -11.58530 -11.49516 -11.10684 -10.88336 -9.64376 -9.17915 -8.90998 -8.63557 -6.41934 0.79111 1.00336 1.36243 1.46240 1.49249 2.15726 2.55101 2.64009 3.51367 3.78565 3.82028 4.08306 4.29425 4.34616 4.35839 4.41618 4.62281 4.69614 4.78325 4.79764 4.93189 5.05869 5.07402 5.19343 5.21064 5.29595 5.41485 5.56409 5.68965 5.84422 5.97589 6.11829 6.26148 6.44452 6.61207 6.65043 6.82983 6.85281 7.32389 8.24003 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.019940 B = 0.007837 C = 0.005964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.897804 B = 3571.839007 C = 4694.024862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.103 4.103 3 C 0.151 3.849 4 H 0.085 0.915 5 N -0.828 5.828 6 C -0.077 4.077 7 C -0.248 4.248 8 C 0.105 3.895 9 C -0.488 4.488 10 H 0.083 0.917 11 C 0.037 3.963 12 N -0.819 5.819 13 Si 0.983 3.017 14 H -0.262 1.262 15 H -0.269 1.269 16 H -0.256 1.256 17 C -0.267 4.267 18 C 0.103 3.897 19 O -0.335 6.335 20 C 0.034 3.966 21 C -0.061 4.061 22 O -0.489 6.489 23 H 0.064 0.936 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.344 0.656 29 H 0.340 0.660 30 H 0.111 0.889 31 H 0.289 0.711 32 H 0.122 0.878 33 H 0.039 0.961 34 H 0.044 0.956 35 H 0.124 0.876 36 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.084 2.658 1.719 5.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.141 4.141 3 C 0.039 3.961 4 H 0.103 0.897 5 N -0.357 5.357 6 C -0.079 4.079 7 C -0.268 4.268 8 C 0.102 3.898 9 C -0.516 4.516 10 H 0.101 0.899 11 C -0.179 4.179 12 N -0.444 5.444 13 Si 0.803 3.197 14 H -0.187 1.187 15 H -0.194 1.194 16 H -0.179 1.179 17 C -0.288 4.288 18 C 0.058 3.942 19 O -0.250 6.250 20 C -0.061 4.061 21 C -0.107 4.107 22 O -0.297 6.297 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.156 0.844 29 H 0.154 0.846 30 H 0.128 0.872 31 H 0.100 0.900 32 H 0.139 0.861 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.142 0.858 36 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -4.710 1.677 2.024 5.394 hybrid contribution 2.294 0.687 -0.520 2.451 sum -2.415 2.364 1.505 3.699 Atomic orbital electron populations 1.21590 0.93488 1.01326 1.02382 1.21399 0.97426 0.94540 1.00756 1.20125 0.86767 0.95949 0.93235 0.89677 1.59153 1.65787 1.07051 1.03673 1.20425 0.97893 0.97844 0.91760 1.20574 0.93145 1.15810 0.97227 1.17769 0.92268 0.87120 0.92631 1.19829 0.97720 1.33404 1.00694 0.89914 1.26801 1.00368 0.92321 0.98405 1.69918 1.20094 1.20193 1.34197 0.85187 0.77232 0.78859 0.78407 1.18668 1.19377 1.17932 1.21324 0.99498 1.16180 0.91774 1.19655 0.92598 0.97663 0.84278 1.85931 1.22835 1.88141 1.28076 1.23016 0.78324 1.00798 1.03936 1.17264 0.85107 1.21319 0.87036 1.84815 1.69404 1.34660 1.40812 0.91663 0.92596 0.92684 0.93585 0.93048 0.84379 0.84644 0.87150 0.90009 0.86077 0.94183 0.93683 0.85807 0.77740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 9.80 71.98 0.71 -2.73 16 2 C -0.10 -3.41 5.56 30.60 0.17 -3.24 16 3 C 0.15 5.16 2.62 44.17 0.12 5.28 16 4 H 0.09 2.79 7.84 -2.39 -0.02 2.77 16 5 N -0.83 -24.69 8.15 -171.80 -1.40 -26.09 16 6 C -0.08 -3.28 5.05 -20.06 -0.10 -3.38 16 7 C -0.25 -11.54 8.93 22.49 0.20 -11.34 16 8 C 0.10 5.52 5.57 -21.29 -0.12 5.40 16 9 C -0.49 -25.21 9.04 23.39 0.21 -24.99 16 10 H 0.08 4.07 7.91 -2.91 -0.02 4.05 16 11 C 0.04 1.80 5.13 85.23 0.44 2.23 16 12 N -0.82 -41.49 10.96 21.82 0.24 -41.25 16 13 Si 0.98 36.57 29.60 68.60 2.03 38.60 16 14 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 15 H -0.27 -9.59 7.11 99.48 0.71 -8.89 16 16 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 17 C -0.27 -14.04 7.67 22.79 0.17 -13.87 16 18 C 0.10 5.12 6.70 22.55 0.15 5.27 16 19 O -0.34 -15.15 10.28 -79.31 -0.82 -15.97 16 20 C 0.03 1.26 9.81 113.37 1.11 2.37 16 21 C -0.06 -2.81 6.71 22.87 0.15 -2.65 16 22 O -0.49 -19.79 12.33 -76.75 -0.95 -20.74 16 23 H 0.06 1.68 7.75 -2.39 -0.02 1.66 16 24 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 26 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.05 1.88 7.99 -2.39 -0.02 1.86 16 28 H 0.34 9.74 9.05 -89.70 -0.81 8.93 16 29 H 0.34 10.36 7.27 -89.70 -0.65 9.71 16 30 H 0.11 4.69 6.18 -2.91 -0.02 4.67 16 31 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 32 H 0.12 6.46 4.39 -2.91 -0.01 6.45 16 33 H 0.04 1.58 7.66 -2.39 -0.02 1.57 16 34 H 0.04 1.63 7.66 -2.39 -0.02 1.61 16 35 H 0.12 3.42 8.14 -2.38 -0.02 3.40 16 36 H 0.37 11.67 9.06 -74.06 -0.67 11.00 16 Total: -1.00 -60.26 298.86 1.31 -58.95 By element: Atomic # 1 Polarization: 49.17 SS G_CDS: -1.01 Total: 48.16 kcal Atomic # 6 Polarization: -44.87 SS G_CDS: 3.21 Total: -41.66 kcal Atomic # 7 Polarization: -66.18 SS G_CDS: -1.16 Total: -67.34 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -1.76 Total: -36.71 kcal Atomic # 14 Polarization: 36.57 SS G_CDS: 2.03 Total: 38.60 kcal Total: -60.26 1.31 -58.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309530100.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.235 kcal (2) G-P(sol) polarization free energy of solvation -60.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds