Wall clock time and date at job start Mon Mar 30 2020 04:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35677 * 117.00076 * 2 1 4 4 C 1.39336 * 119.81351 * 0.02562 * 3 2 1 5 5 C 1.36423 * 120.18006 * 179.72395 * 4 3 2 6 6 C 1.40848 * 119.81438 * 0.27149 * 5 4 3 7 7 C 1.41207 * 120.18142 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00153 * 154.69773 * 7 6 5 9 9 C 1.39892 * 120.00182 * 334.70175 * 7 6 5 10 10 N 1.30890 * 119.99544 * 342.86322 * 9 7 6 11 11 Si 1.86794 * 120.00394 * 162.86327 * 9 7 6 12 12 H 1.48504 * 109.47251 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47105 * 119.99920 * 11 9 7 14 14 H 1.48498 * 109.47625 * 239.99912 * 11 9 7 15 15 C 1.40818 * 119.63988 * 0.02562 * 6 5 4 16 16 C 1.36456 * 119.81513 * 0.02562 * 15 6 5 17 17 C 1.50698 * 119.91109 * 180.02562 * 16 15 6 18 18 C 1.52996 * 109.47000 * 239.99847 * 17 16 15 19 19 N 1.46904 * 109.46689 * 359.97438 * 17 16 15 20 20 C 1.52996 * 109.47509 * 119.99501 * 17 16 15 21 21 O 1.42896 * 109.47305 * 185.00166 * 20 17 16 22 22 H 1.09002 * 109.47197 * 59.99853 * 1 2 3 23 23 H 1.09001 * 109.47188 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47366 * 299.99416 * 1 2 3 25 25 H 1.07995 * 119.90852 * 359.97438 * 4 3 2 26 26 H 1.07996 * 120.08955 * 180.29711 * 5 4 3 27 27 H 0.96994 * 119.99537 * 180.02562 * 10 9 7 28 28 H 1.08006 * 120.09462 * 180.02562 * 15 6 5 29 29 H 1.09001 * 109.47597 * 59.99485 * 18 17 16 30 30 H 1.08995 * 109.47197 * 179.97438 * 18 17 16 31 31 H 1.09002 * 109.47117 * 299.99772 * 18 17 16 32 32 H 1.00906 * 110.99868 * 60.00948 * 19 17 16 33 33 H 1.00900 * 110.99811 * 183.95155 * 19 17 16 34 34 H 1.09002 * 109.47227 * 305.00140 * 20 17 16 35 35 H 1.09000 * 109.46915 * 64.99931 * 20 17 16 36 36 H 0.96698 * 113.99928 * 180.02562 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2823 2.3750 0.0005 5 6 1.8938 3.5944 0.0062 6 6 3.3001 3.6726 0.0058 7 6 3.9412 4.9307 0.0111 8 1 4.9400 5.0262 0.4107 9 6 3.2826 6.0536 -0.5012 10 7 2.2391 5.9029 -1.2769 11 14 3.8922 7.7678 -0.0782 12 1 5.0791 7.6664 0.8084 13 1 4.2662 8.4819 -1.3254 14 1 2.8163 8.5181 0.6180 15 6 4.0634 2.4892 -0.0011 16 6 3.4362 1.2774 -0.0078 17 6 4.2508 0.0096 -0.0146 18 6 3.9199 -0.8025 -1.2683 19 7 5.6807 0.3465 -0.0132 20 6 3.9198 -0.8161 1.2301 21 8 4.7745 -1.9600 1.2842 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 0.2041 2.3132 0.0005 26 1 1.3013 4.4973 0.0115 27 1 1.7827 6.6814 -1.6323 28 1 5.1422 2.5406 -0.0011 29 1 4.1558 -0.2143 -2.1551 30 1 4.5095 -1.7193 -1.2735 31 1 2.8589 -1.0524 -1.2697 32 1 5.9249 0.8835 0.8055 33 1 6.2482 -0.4850 -0.0825 34 1 4.0713 -0.2069 2.1212 35 1 2.8803 -1.1411 1.1846 36 1 4.6199 -2.5307 2.0493 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309549061.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:55 Heat of formation + Delta-G solvation = -69.383089 kcal Electronic energy + Delta-G solvation = -19019.966602 eV Core-core repulsion = 16083.103344 eV Total energy + Delta-G solvation = -2936.863259 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.35252 -37.33563 -36.30094 -34.63525 -33.00605 -29.61424 -29.30989 -28.11409 -26.74553 -25.80353 -24.53020 -21.68904 -20.45610 -19.13415 -17.47824 -16.82456 -16.56003 -15.58624 -14.95840 -14.87394 -14.81769 -14.21290 -14.06093 -13.75281 -13.01254 -12.85567 -12.39034 -12.15677 -11.91241 -11.49467 -11.29353 -11.21785 -11.14026 -11.01189 -10.77553 -10.74064 -10.51843 -9.88217 -9.70382 -9.64469 -9.31127 -8.97894 -8.12592 -7.53070 -6.94438 -6.69147 -4.21529 2.77310 2.92167 3.10651 3.15878 3.19930 3.98097 4.29709 4.47866 4.67621 5.16531 5.50490 5.52666 5.63328 5.68846 5.75097 5.86307 5.89945 6.10535 6.15756 6.25244 6.50955 6.53341 6.72100 6.86078 7.02229 7.10849 7.31414 7.41214 7.55408 7.72352 7.82454 7.94794 8.04782 8.06647 8.23513 8.46115 8.67455 8.94152 9.01509 10.26051 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.026590 B = 0.006806 C = 0.005765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.782733 B = 4112.864867 C = 4856.007292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.328 6.328 3 C -0.003 4.003 4 C -0.175 4.175 5 C -0.134 4.134 6 C 0.085 3.915 7 C -0.460 4.460 8 H 0.077 0.923 9 C 0.074 3.926 10 N -0.802 5.802 11 Si 0.906 3.094 12 H -0.261 1.261 13 H -0.276 1.276 14 H -0.274 1.274 15 C -0.170 4.170 16 C -0.077 4.077 17 C 0.181 3.819 18 C -0.128 4.128 19 N -0.830 5.830 20 C 0.049 3.951 21 O -0.578 6.578 22 H 0.043 0.957 23 H 0.079 0.921 24 H 0.041 0.959 25 H 0.095 0.905 26 H 0.119 0.881 27 H 0.278 0.722 28 H 0.115 0.885 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.337 0.663 33 H 0.337 0.663 34 H 0.037 0.963 35 H 0.064 0.936 36 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.874 -8.623 3.996 9.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.244 6.244 3 C -0.047 4.047 4 C -0.194 4.194 5 C -0.153 4.153 6 C 0.083 3.917 7 C -0.491 4.491 8 H 0.095 0.905 9 C -0.142 4.142 10 N -0.429 5.429 11 Si 0.730 3.270 12 H -0.185 1.185 13 H -0.201 1.201 14 H -0.199 1.199 15 C -0.190 4.190 16 C -0.078 4.078 17 C 0.088 3.912 18 C -0.185 4.185 19 N -0.359 5.359 20 C -0.031 4.031 21 O -0.383 6.383 22 H 0.061 0.939 23 H 0.098 0.902 24 H 0.059 0.941 25 H 0.113 0.887 26 H 0.137 0.863 27 H 0.088 0.912 28 H 0.132 0.868 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -0.866 -7.989 2.610 8.449 hybrid contribution -0.437 0.342 1.485 1.585 sum -1.303 -7.647 4.095 8.772 Atomic orbital electron populations 1.22699 0.81371 1.01483 1.00445 1.85830 1.18818 1.28547 1.91171 1.18342 0.90947 0.82984 1.12412 1.20568 0.97449 0.93108 1.08254 1.20952 0.95265 0.95614 1.03498 1.17616 0.91616 0.92480 0.90021 1.19477 1.01858 0.91945 1.35786 0.90487 1.25860 0.94237 1.01373 0.92724 1.69851 1.17696 1.32289 1.23019 0.86307 0.79801 0.81655 0.79201 1.18466 1.20106 1.19909 1.20585 0.98864 0.90520 1.08995 1.18155 0.89169 0.93413 1.07037 1.19308 0.87663 0.91456 0.92812 1.21707 1.01749 0.98327 0.96733 1.58941 1.03718 1.25805 1.47402 1.23179 0.94315 0.86687 0.98889 1.86378 1.62602 1.38779 1.50492 0.93850 0.90238 0.94053 0.88694 0.86274 0.91154 0.86760 0.92570 0.93411 0.91266 0.84962 0.84988 0.94460 0.91798 0.78303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 9.80 101.05 0.99 1.54 16 2 O -0.33 -6.24 6.17 -18.73 -0.12 -6.35 16 3 C 0.00 -0.07 6.32 -38.78 -0.24 -0.32 16 4 C -0.17 -4.05 8.96 -39.83 -0.36 -4.40 16 5 C -0.13 -3.45 8.63 -39.25 -0.34 -3.79 16 6 C 0.08 2.25 5.57 -106.81 -0.59 1.65 16 7 C -0.46 -12.22 9.04 -37.84 -0.34 -12.56 16 8 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 9 C 0.07 1.88 5.14 -17.33 -0.09 1.79 16 10 N -0.80 -20.93 10.96 55.55 0.61 -20.32 16 11 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 16 12 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 13 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 14 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 15 C -0.17 -4.13 8.87 -39.25 -0.35 -4.48 16 16 C -0.08 -1.70 4.75 -104.87 -0.50 -2.20 16 17 C 0.18 3.39 0.76 -132.76 -0.10 3.29 16 18 C -0.13 -2.34 8.42 37.16 0.31 -2.03 16 19 N -0.83 -14.59 7.71 -0.20 0.00 -14.59 16 20 C 0.05 0.81 5.79 37.16 0.22 1.02 16 21 O -0.58 -8.21 12.52 -35.23 -0.44 -8.65 16 22 H 0.04 0.66 7.65 -51.93 -0.40 0.26 16 23 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.04 0.60 7.65 -51.93 -0.40 0.21 16 25 H 0.10 1.96 6.27 -52.49 -0.33 1.63 16 26 H 0.12 3.18 6.19 -52.49 -0.32 2.85 16 27 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 28 H 0.11 2.68 6.45 -52.48 -0.34 2.35 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.80 7.82 -51.93 -0.41 0.40 16 31 H 0.07 1.28 6.15 -51.93 -0.32 0.96 16 32 H 0.34 5.75 8.03 -39.29 -0.32 5.44 16 33 H 0.34 5.40 8.38 -39.29 -0.33 5.07 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 1.09 6.25 -51.93 -0.32 0.77 16 36 H 0.37 3.55 9.12 45.56 0.42 3.97 16 LS Contribution 290.91 15.07 4.38 4.38 Total: -1.00 -28.65 290.91 -5.87 -34.52 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -3.88 Total: 17.67 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -1.40 Total: -20.49 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.61 Total: -34.91 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.56 Total: -15.00 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.65 -5.87 -34.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309549061.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.861 kcal (2) G-P(sol) polarization free energy of solvation -28.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds