Wall clock time and date at job start Mon Mar 30 2020 04:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35677 * 117.00076 * 2 1 4 4 C 1.39336 * 119.81351 * 0.02562 * 3 2 1 5 5 C 1.36423 * 120.18006 * 179.72395 * 4 3 2 6 6 C 1.40848 * 119.81438 * 0.27149 * 5 4 3 7 7 C 1.41207 * 120.18142 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00153 * 154.69773 * 7 6 5 9 9 C 1.39892 * 120.00182 * 334.70175 * 7 6 5 10 10 N 1.30890 * 119.99544 * 342.86322 * 9 7 6 11 11 Si 1.86794 * 120.00394 * 162.86327 * 9 7 6 12 12 H 1.48504 * 109.47251 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47105 * 119.99920 * 11 9 7 14 14 H 1.48498 * 109.47625 * 239.99912 * 11 9 7 15 15 C 1.40818 * 119.63988 * 0.02562 * 6 5 4 16 16 C 1.36456 * 119.81513 * 0.02562 * 15 6 5 17 17 C 1.50698 * 119.91109 * 180.02562 * 16 15 6 18 18 C 1.52996 * 109.47000 * 239.99847 * 17 16 15 19 19 N 1.46904 * 109.46689 * 359.97438 * 17 16 15 20 20 C 1.52996 * 109.47509 * 119.99501 * 17 16 15 21 21 O 1.42896 * 109.47305 * 185.00166 * 20 17 16 22 22 H 1.09002 * 109.47197 * 59.99853 * 1 2 3 23 23 H 1.09001 * 109.47188 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47366 * 299.99416 * 1 2 3 25 25 H 1.07995 * 119.90852 * 359.97438 * 4 3 2 26 26 H 1.07996 * 120.08955 * 180.29711 * 5 4 3 27 27 H 0.96994 * 119.99537 * 180.02562 * 10 9 7 28 28 H 1.08006 * 120.09462 * 180.02562 * 15 6 5 29 29 H 1.09001 * 109.47597 * 59.99485 * 18 17 16 30 30 H 1.08995 * 109.47197 * 179.97438 * 18 17 16 31 31 H 1.09002 * 109.47117 * 299.99772 * 18 17 16 32 32 H 1.00906 * 110.99868 * 60.00948 * 19 17 16 33 33 H 1.00900 * 110.99811 * 183.95155 * 19 17 16 34 34 H 1.09002 * 109.47227 * 305.00140 * 20 17 16 35 35 H 1.09000 * 109.46915 * 64.99931 * 20 17 16 36 36 H 0.96698 * 113.99928 * 180.02562 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2823 2.3750 0.0005 5 6 1.8938 3.5944 0.0062 6 6 3.3001 3.6726 0.0058 7 6 3.9412 4.9307 0.0111 8 1 4.9400 5.0262 0.4107 9 6 3.2826 6.0536 -0.5012 10 7 2.2391 5.9029 -1.2769 11 14 3.8922 7.7678 -0.0782 12 1 5.0791 7.6664 0.8084 13 1 4.2662 8.4819 -1.3254 14 1 2.8163 8.5181 0.6180 15 6 4.0634 2.4892 -0.0011 16 6 3.4362 1.2774 -0.0078 17 6 4.2508 0.0096 -0.0146 18 6 3.9199 -0.8025 -1.2683 19 7 5.6807 0.3465 -0.0132 20 6 3.9198 -0.8161 1.2301 21 8 4.7745 -1.9600 1.2842 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 0.2041 2.3132 0.0005 26 1 1.3013 4.4973 0.0115 27 1 1.7827 6.6814 -1.6323 28 1 5.1422 2.5406 -0.0011 29 1 4.1558 -0.2143 -2.1551 30 1 4.5095 -1.7193 -1.2735 31 1 2.8589 -1.0524 -1.2697 32 1 5.9249 0.8835 0.8055 33 1 6.2482 -0.4850 -0.0825 34 1 4.0713 -0.2069 2.1212 35 1 2.8803 -1.1411 1.1846 36 1 4.6199 -2.5307 2.0493 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309549061.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:54 Heat of formation + Delta-G solvation = -90.486880 kcal Electronic energy + Delta-G solvation = -19020.881731 eV Core-core repulsion = 16083.103344 eV Total energy + Delta-G solvation = -2937.778388 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.99372 -38.72092 -37.97718 -36.06787 -34.79783 -31.32013 -31.06195 -29.70903 -28.16802 -27.16244 -26.33162 -23.40267 -22.23254 -20.76883 -18.98227 -18.52884 -18.02360 -17.22306 -16.63898 -16.33505 -16.25337 -15.62158 -15.48884 -15.33717 -14.73943 -14.48317 -13.96355 -13.68201 -13.52986 -13.19300 -12.88512 -12.76306 -12.74492 -12.51605 -12.39373 -12.26207 -12.09201 -11.56900 -11.50630 -11.08633 -10.88998 -10.81456 -9.54290 -9.36005 -8.77850 -8.55664 -6.17737 0.98609 1.05125 1.39722 1.50612 1.54596 2.24490 2.73051 2.82236 3.33350 3.70816 3.73666 4.08736 4.24123 4.34514 4.35913 4.50865 4.53682 4.71140 4.77687 4.82423 4.87151 5.06691 5.12689 5.16906 5.20580 5.35894 5.49334 5.59164 5.75639 6.02477 6.13485 6.20444 6.47716 6.61332 6.74524 6.84694 6.88706 7.01693 7.14954 8.41203 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.026590 B = 0.006806 C = 0.005765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.782733 B = 4112.864867 C = 4856.007292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.327 6.327 3 C 0.011 3.989 4 C -0.182 4.182 5 C -0.157 4.157 6 C 0.052 3.948 7 C -0.498 4.498 8 H 0.073 0.927 9 C 0.033 3.967 10 N -0.836 5.836 11 Si 0.979 3.021 12 H -0.259 1.259 13 H -0.269 1.269 14 H -0.265 1.265 15 C -0.179 4.179 16 C -0.083 4.083 17 C 0.178 3.822 18 C -0.120 4.120 19 N -0.834 5.834 20 C 0.064 3.936 21 O -0.579 6.579 22 H 0.042 0.958 23 H 0.118 0.882 24 H 0.048 0.952 25 H 0.117 0.883 26 H 0.102 0.898 27 H 0.284 0.716 28 H 0.115 0.885 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.340 0.660 33 H 0.348 0.652 34 H 0.033 0.967 35 H 0.062 0.938 36 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.007 -10.058 4.542 11.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.242 6.242 3 C -0.033 4.033 4 C -0.201 4.201 5 C -0.176 4.176 6 C 0.050 3.950 7 C -0.528 4.528 8 H 0.091 0.909 9 C -0.180 4.180 10 N -0.464 5.464 11 Si 0.800 3.200 12 H -0.182 1.182 13 H -0.194 1.194 14 H -0.190 1.190 15 C -0.198 4.198 16 C -0.084 4.084 17 C 0.085 3.915 18 C -0.178 4.178 19 N -0.365 5.365 20 C -0.016 4.016 21 O -0.387 6.387 22 H 0.061 0.939 23 H 0.137 0.863 24 H 0.066 0.934 25 H 0.135 0.865 26 H 0.120 0.880 27 H 0.095 0.905 28 H 0.133 0.867 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.153 0.847 33 H 0.163 0.837 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -1.004 -9.470 3.172 10.038 hybrid contribution -0.460 0.555 1.316 1.500 sum -1.465 -8.915 4.488 10.088 Atomic orbital electron populations 1.23051 0.78950 1.04239 1.00713 1.85842 1.21187 1.26547 1.90649 1.18435 0.91157 0.83771 1.09934 1.20798 0.98798 0.92674 1.07792 1.20883 0.95143 0.96068 1.05536 1.17946 0.92351 0.93426 0.91291 1.19697 1.02287 0.93215 1.37626 0.90921 1.26675 0.94272 1.05050 0.91985 1.69909 1.18928 1.33684 1.23876 0.85210 0.79321 0.76428 0.79034 1.18221 1.19383 1.19016 1.20694 0.98964 0.90940 1.09228 1.18525 0.89993 0.94325 1.05548 1.19280 0.87726 0.90213 0.94319 1.21629 1.01944 0.98589 0.95623 1.58863 1.03377 1.26529 1.47747 1.22794 0.94395 0.87174 0.97244 1.86320 1.61969 1.38283 1.52122 0.93933 0.86337 0.93379 0.86499 0.88040 0.90521 0.86708 0.94349 0.91681 0.91378 0.84721 0.83743 0.94878 0.91978 0.75579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.80 113.37 1.11 1.81 16 2 O -0.33 -11.64 6.17 -89.95 -0.55 -12.20 16 3 C 0.01 0.49 6.32 22.79 0.14 0.64 16 4 C -0.18 -8.41 8.96 22.11 0.20 -8.21 16 5 C -0.16 -8.33 8.63 22.48 0.19 -8.14 16 6 C 0.05 2.84 5.57 -21.28 -0.12 2.73 16 7 C -0.50 -27.47 9.04 23.40 0.21 -27.26 16 8 H 0.07 3.89 7.90 -2.91 -0.02 3.87 16 9 C 0.03 1.71 5.14 85.23 0.44 2.15 16 10 N -0.84 -44.99 10.96 21.82 0.24 -44.76 16 11 Si 0.98 39.37 29.59 68.60 2.03 41.40 16 12 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 13 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 14 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 15 C -0.18 -8.86 8.87 22.48 0.20 -8.66 16 16 C -0.08 -3.65 4.75 -20.03 -0.10 -3.74 16 17 C 0.18 6.40 0.76 2.78 0.00 6.40 16 18 C -0.12 -4.19 8.42 71.98 0.61 -3.58 16 19 N -0.83 -28.34 7.71 -154.53 -1.19 -29.53 16 20 C 0.06 1.95 5.79 71.98 0.42 2.37 16 21 O -0.58 -14.51 12.52 -148.98 -1.86 -16.38 16 22 H 0.04 1.18 7.65 -2.39 -0.02 1.16 16 23 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 24 H 0.05 1.26 7.65 -2.39 -0.02 1.25 16 25 H 0.12 4.74 6.27 -2.91 -0.02 4.72 16 26 H 0.10 5.66 6.19 -2.91 -0.02 5.64 16 27 H 0.28 13.85 8.30 -92.71 -0.77 13.08 16 28 H 0.12 5.53 6.45 -2.91 -0.02 5.51 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 2.02 7.82 -2.39 -0.02 2.00 16 31 H 0.07 2.36 6.15 -2.39 -0.01 2.35 16 32 H 0.34 11.31 8.03 -89.69 -0.72 10.59 16 33 H 0.35 10.46 8.38 -89.69 -0.75 9.70 16 34 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.93 6.25 -2.39 -0.01 1.92 16 36 H 0.39 6.06 9.12 -74.06 -0.68 5.39 16 Total: -1.00 -62.66 290.91 0.95 -61.71 By element: Atomic # 1 Polarization: 44.27 SS G_CDS: -1.02 Total: 43.25 kcal Atomic # 6 Polarization: -46.81 SS G_CDS: 3.31 Total: -43.50 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -0.95 Total: -74.28 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -2.42 Total: -28.58 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -62.66 0.95 -61.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309549061.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.780 kcal (2) G-P(sol) polarization free energy of solvation -62.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds