Wall clock time and date at job start Mon Mar 30 2020 05:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46869 * 2 1 4 4 N 1.46905 * 109.47191 * 119.99949 * 2 1 3 5 5 C 1.46902 * 110.99800 * 274.99934 * 4 2 1 6 6 C 1.50706 * 109.46577 * 180.02562 * 5 4 2 7 7 H 1.07995 * 120.00167 * 359.72326 * 6 5 4 8 8 C 1.37879 * 119.99394 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00338 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99424 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47474 * 90.00322 * 10 8 6 12 12 H 1.48507 * 109.46754 * 210.00056 * 10 8 6 13 13 H 1.48498 * 109.47278 * 329.99887 * 10 8 6 14 14 C 1.52995 * 109.47240 * 240.00076 * 2 1 3 15 15 H 1.08998 * 109.47078 * 65.00034 * 14 2 1 16 16 O 1.42892 * 109.47138 * 304.99835 * 14 2 1 17 17 C 1.50700 * 109.47308 * 185.00047 * 14 2 1 18 18 C 1.38261 * 119.94845 * 84.72880 * 17 14 2 19 19 C 1.38146 * 120.05835 * 179.72704 * 18 17 14 20 20 C 1.38729 * 119.94017 * 0.54597 * 19 18 17 21 21 O 1.35906 * 120.05325 * 179.74819 * 20 19 18 22 22 C 1.38733 * 119.89133 * 359.72174 * 20 19 18 23 23 C 1.38138 * 119.94541 * 0.02562 * 22 20 19 24 24 H 1.08996 * 109.47051 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46808 * 299.99830 * 1 2 3 26 26 H 1.09001 * 109.47129 * 59.99933 * 1 2 3 27 27 H 1.00891 * 110.99988 * 38.95349 * 4 2 1 28 28 H 1.09000 * 109.47263 * 60.00269 * 5 4 2 29 29 H 1.09001 * 109.47582 * 299.99548 * 5 4 2 30 30 H 0.96996 * 119.99730 * 179.97438 * 9 8 6 31 31 H 0.96701 * 114.00403 * 300.00070 * 16 14 2 32 32 H 1.08002 * 119.96865 * 359.97438 * 18 17 14 33 33 H 1.08001 * 120.02740 * 180.26722 * 19 18 17 34 34 H 0.96692 * 114.00031 * 269.97714 * 21 20 19 35 35 H 1.08000 * 120.02544 * 179.97438 * 22 20 19 36 36 H 1.08001 * 119.97710 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5886 -0.5215 3.5557 7 1 2.8343 -1.5705 3.4803 8 6 2.7320 0.1354 4.7594 9 7 2.4266 1.4112 4.8528 10 14 3.3600 -0.7869 6.2576 11 1 4.8409 -0.6916 6.3128 12 1 2.7793 -0.1884 7.4865 13 1 2.9588 -2.2136 6.1647 14 6 2.0400 -0.7212 -1.2492 15 1 1.7517 -0.1583 -2.1369 16 8 1.4703 -2.0303 -1.3094 17 6 3.5419 -0.8294 -1.1889 18 6 4.1317 -1.8732 -0.5002 19 6 5.5082 -1.9777 -0.4481 20 6 6.2990 -1.0278 -1.0781 21 8 7.6534 -1.1255 -1.0241 22 6 5.7049 0.0217 -1.7638 23 6 4.3280 0.1189 -1.8173 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.4496 -1.4978 1.4101 28 1 1.0871 0.6163 2.5526 29 1 2.7589 1.0462 2.1183 30 1 2.5272 1.8731 5.6998 31 1 1.6859 -2.5884 -0.5497 32 1 3.5155 -2.6097 -0.0058 33 1 5.9683 -2.7957 0.0863 34 1 8.0510 -0.6685 -0.2704 35 1 6.3185 0.7627 -2.2547 36 1 3.8650 0.9355 -2.3514 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309556606.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:20 Heat of formation + Delta-G solvation = -99.141696 kcal Electronic energy + Delta-G solvation = -18566.253553 eV Core-core repulsion = 15628.099865 eV Total energy + Delta-G solvation = -2938.153689 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.89735 -39.31517 -37.22285 -36.29822 -34.61064 -32.07907 -31.58828 -30.76163 -27.91068 -26.62520 -24.06363 -23.52137 -22.66666 -21.44852 -19.29714 -18.66362 -18.01195 -17.13348 -16.84137 -16.38721 -16.20454 -15.75835 -15.40796 -15.16919 -14.42335 -14.34917 -14.14421 -13.79584 -13.56634 -13.44891 -13.12297 -12.85805 -12.76119 -12.74076 -12.58090 -12.30114 -12.06625 -11.69723 -11.33763 -11.27950 -10.91645 -10.64722 -9.79661 -9.28722 -9.00620 -8.20910 -6.30650 0.38406 0.56512 1.41191 1.41689 1.52688 2.39792 2.75472 3.13213 3.43091 3.51133 3.63153 3.83954 4.01961 4.13264 4.18857 4.33862 4.50412 4.56990 4.59045 4.83277 4.92701 4.97134 5.04433 5.15941 5.21177 5.29501 5.37698 5.44830 5.57277 5.63391 5.77895 6.01214 6.05286 6.45130 6.74413 6.76843 6.87857 6.93237 7.40031 8.90375 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.016181 B = 0.007277 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.987837 B = 3846.914651 C = 4980.794506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.053 3.947 3 H 0.064 0.936 4 N -0.669 5.669 5 C 0.218 3.782 6 C -0.527 4.527 7 H 0.066 0.934 8 C 0.001 3.999 9 N -0.935 5.935 10 Si 0.967 3.033 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.262 1.262 14 C 0.171 3.829 15 H 0.120 0.880 16 O -0.561 6.561 17 C -0.113 4.113 18 C -0.067 4.067 19 C -0.162 4.162 20 C 0.087 3.913 21 O -0.512 6.512 22 C -0.159 4.159 23 C -0.108 4.108 24 H 0.067 0.933 25 H 0.033 0.967 26 H 0.073 0.927 27 H 0.334 0.666 28 H -0.039 1.039 29 H -0.007 1.007 30 H 0.263 0.737 31 H 0.382 0.618 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.405 0.595 35 H 0.140 0.860 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.802 -4.164 -12.102 13.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.058 4.058 3 H 0.082 0.918 4 N -0.300 5.300 5 C 0.090 3.910 6 C -0.565 4.565 7 H 0.084 0.916 8 C -0.197 4.197 9 N -0.575 5.575 10 Si 0.792 3.208 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.186 1.186 14 C 0.111 3.889 15 H 0.138 0.862 16 O -0.368 6.368 17 C -0.114 4.114 18 C -0.085 4.085 19 C -0.181 4.181 20 C 0.043 3.957 21 O -0.325 6.325 22 C -0.177 4.177 23 C -0.126 4.126 24 H 0.086 0.914 25 H 0.052 0.948 26 H 0.092 0.908 27 H 0.151 0.849 28 H -0.021 1.021 29 H 0.011 0.989 30 H 0.072 0.928 31 H 0.231 0.769 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.264 0.736 35 H 0.158 0.842 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.162 -4.045 -13.209 14.172 hybrid contribution -0.236 0.312 2.364 2.396 sum 2.926 -3.733 -10.845 11.837 Atomic orbital electron populations 1.22270 0.95997 1.02649 1.01485 1.22238 0.93720 0.97970 0.91889 0.91817 1.60623 1.55564 1.09844 1.03923 1.19096 0.92658 0.91363 0.87897 1.21539 1.43273 0.97147 0.94537 0.91563 1.25888 0.95822 0.95717 1.02261 1.70089 1.49962 1.10715 1.26774 0.85425 0.78365 0.78982 0.78078 1.20173 1.21084 1.18599 1.20808 0.86996 0.84097 0.96974 0.86218 1.86482 1.75876 1.25057 1.49376 1.20523 0.96861 0.95913 0.98066 1.20785 0.93866 0.98043 0.95781 1.21538 0.94393 1.00836 1.01297 1.18607 0.83182 0.95145 0.98769 1.84715 1.16372 1.78275 1.53094 1.21500 0.95495 0.98531 1.02176 1.21090 0.93166 0.98861 0.99456 0.91361 0.94782 0.90777 0.84890 1.02145 0.98903 0.92845 0.76855 0.85295 0.85184 0.73633 0.84204 0.83910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.80 8.96 71.98 0.65 -4.16 16 2 C 0.05 1.68 2.48 44.91 0.11 1.79 16 3 H 0.06 2.24 7.80 -2.38 -0.02 2.22 16 4 N -0.67 -25.52 4.59 -495.55 -2.28 -27.79 16 5 C 0.22 11.06 5.24 85.56 0.45 11.50 16 6 C -0.53 -28.77 9.32 25.60 0.24 -28.53 16 7 H 0.07 3.48 7.81 -2.91 -0.02 3.46 16 8 C 0.00 0.06 5.46 84.66 0.46 0.52 16 9 N -0.93 -55.72 13.29 21.45 0.28 -55.43 16 10 Si 0.97 43.49 29.54 68.60 2.03 45.52 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 13 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 14 C 0.17 4.57 3.15 29.85 0.09 4.66 16 15 H 0.12 2.75 8.05 -2.39 -0.02 2.73 16 16 O -0.56 -14.67 12.26 -148.98 -1.83 -16.50 16 17 C -0.11 -3.27 4.78 -19.85 -0.09 -3.37 16 18 C -0.07 -2.00 8.38 22.25 0.19 -1.81 16 19 C -0.16 -4.84 9.99 22.37 0.22 -4.62 16 20 C 0.09 2.51 6.70 22.51 0.15 2.66 16 21 O -0.51 -12.97 13.50 -92.49 -1.25 -14.22 16 22 C -0.16 -4.28 9.99 22.36 0.22 -4.05 16 23 C -0.11 -2.89 9.67 22.26 0.22 -2.68 16 24 H 0.07 1.87 7.55 -2.39 -0.02 1.85 16 25 H 0.03 1.14 7.45 -2.39 -0.02 1.12 16 26 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.33 11.98 8.03 -89.70 -0.72 11.26 16 28 H -0.04 -2.16 7.44 -2.39 -0.02 -2.18 16 29 H -0.01 -0.41 8.06 -2.39 -0.02 -0.43 16 30 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 31 H 0.38 8.98 6.67 -74.06 -0.49 8.48 16 32 H 0.13 3.61 6.58 -2.91 -0.02 3.59 16 33 H 0.13 3.55 8.06 -2.91 -0.02 3.52 16 34 H 0.41 6.85 9.06 -74.06 -0.67 6.18 16 35 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 36 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -65.68 303.73 -0.91 -66.59 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: -0.78 Total: 29.90 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: 2.90 Total: -28.08 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -1.99 Total: -83.23 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -3.08 Total: -30.71 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -65.68 -0.91 -66.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309556606.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.547 kcal (2) G-P(sol) polarization free energy of solvation -65.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds