Wall clock time and date at job start Mon Mar 30 2020 05:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08002 * 120.00331 * 114.37005 * 4 2 1 6 6 C 1.37885 * 120.00119 * 294.35814 * 4 2 1 7 7 N 1.31516 * 120.00168 * 156.60535 * 6 4 2 8 8 Si 1.86799 * 119.99974 * 336.88923 * 6 4 2 9 9 H 1.48495 * 109.47179 * 179.71887 * 8 6 4 10 10 H 1.48504 * 109.47000 * 299.71811 * 8 6 4 11 11 H 1.48500 * 109.47297 * 59.71926 * 8 6 4 12 12 N 1.46897 * 109.47069 * 240.00066 * 2 1 3 13 13 C 1.46910 * 110.99968 * 84.99944 * 12 2 1 14 14 C 1.52995 * 109.47174 * 180.02562 * 13 12 2 15 15 C 1.50700 * 109.47384 * 179.97438 * 14 13 12 16 16 C 1.38253 * 119.92485 * 269.72701 * 15 14 13 17 17 C 1.38240 * 120.14002 * 179.72072 * 16 15 14 18 18 C 1.38559 * 120.00460 * 0.55147 * 17 16 15 19 19 O 1.35998 * 120.07891 * 179.70446 * 18 17 16 20 20 C 1.39161 * 119.85053 * 359.72638 * 18 17 16 21 21 O 1.35997 * 120.06815 * 180.02562 * 20 18 17 22 22 C 1.38244 * 119.92537 * 89.99834 * 15 14 13 23 23 H 1.09006 * 109.47378 * 53.10132 * 1 2 3 24 24 H 1.08996 * 109.47246 * 173.10534 * 1 2 3 25 25 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 26 26 H 0.97002 * 119.99516 * 355.21605 * 7 6 4 27 27 H 1.00899 * 110.99860 * 321.05226 * 12 2 1 28 28 H 1.09000 * 109.46893 * 300.00418 * 13 12 2 29 29 H 1.08997 * 109.46937 * 60.00212 * 13 12 2 30 30 H 1.09007 * 109.47226 * 300.00268 * 14 13 12 31 31 H 1.09008 * 109.47308 * 59.99536 * 14 13 12 32 32 H 1.08001 * 119.92640 * 359.97438 * 16 15 14 33 33 H 1.08004 * 119.99842 * 180.25401 * 17 16 15 34 34 H 0.96701 * 113.99770 * 270.02674 * 19 18 17 35 35 H 0.96696 * 113.99773 * 269.96975 * 21 20 18 36 36 H 1.08005 * 120.00034 * 359.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5762 -1.6385 1.1339 6 6 1.7978 -0.1755 2.4794 7 7 1.8025 -0.9538 3.5396 8 14 1.4655 1.6533 2.6648 9 1 1.2395 1.9726 4.0973 10 1 2.6336 2.4219 2.1647 11 1 0.2592 2.0194 1.8799 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2227 -2.3469 14 6 2.5949 -0.5330 -3.5745 15 6 2.6588 0.4056 -4.7518 16 6 1.5644 0.5414 -5.5857 17 6 1.6160 1.4054 -6.6635 18 6 2.7702 2.1290 -6.9169 19 8 2.8247 2.9749 -7.9803 20 6 3.8737 1.9879 -6.0808 21 8 5.0086 2.6963 -6.3251 22 6 3.8134 1.1245 -4.9988 23 1 -0.3634 0.6170 -0.8219 24 1 -0.3633 -1.0202 -0.1234 25 1 -0.3633 0.4033 0.9453 26 1 1.9017 -1.9132 3.4364 27 1 1.4495 -1.4978 -1.4101 28 1 1.0870 0.6164 -2.5525 29 1 2.7588 1.0462 -2.1183 30 1 3.5903 -0.9272 -3.3692 31 1 1.9182 -1.3565 -3.8030 32 1 0.6658 -0.0256 -5.3921 33 1 0.7583 1.5129 -7.3111 34 1 3.1409 2.5620 -8.7956 35 1 5.6378 2.2439 -6.9033 36 1 4.6683 1.0135 -4.3482 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309720722.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:39 Heat of formation + Delta-G solvation = -69.440155 kcal Electronic energy + Delta-G solvation = -17723.216241 eV Core-core repulsion = 14786.350507 eV Total energy + Delta-G solvation = -2936.865733 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.36848 -37.50777 -37.12155 -36.12396 -33.19022 -31.72263 -30.23838 -29.10362 -26.46827 -24.70462 -23.02773 -22.68033 -21.07210 -19.92981 -18.94697 -17.77611 -17.39904 -16.50020 -16.07653 -15.11080 -14.95535 -14.38503 -14.09948 -13.93721 -13.76813 -13.30247 -12.72132 -12.59404 -12.41163 -11.96285 -11.84898 -11.72764 -11.45035 -11.27310 -10.86233 -10.69433 -10.43587 -10.32500 -10.03946 -9.72653 -9.03394 -8.99602 -8.56843 -8.14071 -7.43620 -6.40331 -3.96680 0.96024 1.06431 3.32740 3.41660 3.47570 3.63960 3.88651 3.91861 4.54524 4.66585 4.68546 5.08911 5.17486 5.25172 5.29822 5.38153 5.53349 5.62753 5.75105 5.89321 6.02278 6.12087 6.16436 6.26887 6.34534 6.43893 6.50036 6.57844 6.66096 6.88337 7.16429 7.21093 7.57468 7.82244 8.29713 8.38186 8.49547 9.06175 9.67510 10.96669 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.034803 B = 0.004034 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.327965 B = 6939.020704 C = 7108.410030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.189 3.811 3 H 0.025 0.975 4 C -0.589 4.589 5 H 0.063 0.937 6 C 0.034 3.966 7 N -0.903 5.903 8 Si 1.035 2.965 9 H -0.285 1.285 10 H -0.284 1.284 11 H -0.280 1.280 12 N -0.675 5.675 13 C 0.062 3.938 14 C -0.080 4.080 15 C -0.061 4.061 16 C -0.110 4.110 17 C -0.129 4.129 18 C 0.067 3.933 19 O -0.489 6.489 20 C 0.081 3.919 21 O -0.488 6.488 22 C -0.126 4.126 23 H 0.019 0.981 24 H 0.043 0.957 25 H 0.056 0.944 26 H 0.269 0.731 27 H 0.328 0.672 28 H 0.020 0.980 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.383 0.617 35 H 0.385 0.615 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.602 2.923 -23.284 23.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.080 3.920 3 H 0.043 0.957 4 C -0.627 4.627 5 H 0.081 0.919 6 C -0.172 4.172 7 N -0.536 5.536 8 Si 0.863 3.137 9 H -0.211 1.211 10 H -0.210 1.210 11 H -0.206 1.206 12 N -0.304 5.304 13 C -0.068 4.068 14 C -0.118 4.118 15 C -0.062 4.062 16 C -0.128 4.128 17 C -0.147 4.147 18 C 0.022 3.978 19 O -0.299 6.299 20 C 0.036 3.964 21 O -0.298 6.298 22 C -0.144 4.144 23 H 0.038 0.962 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.144 0.856 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.238 0.762 35 H 0.240 0.760 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.539 5.037 -21.198 21.843 hybrid contribution -0.318 -1.658 -2.064 2.667 sum 1.221 3.379 -23.263 23.539 Atomic orbital electron populations 1.22820 1.01169 0.99668 0.99872 1.19492 0.88989 0.94493 0.89023 0.95714 1.21909 1.39691 1.10915 0.90212 0.91853 1.25634 0.93784 1.05596 0.92167 1.70849 1.44605 1.06276 1.31897 0.84172 0.77048 0.76423 0.76029 1.21064 1.20995 1.20643 1.60742 1.57948 1.08844 1.02906 1.21929 0.98583 0.96029 0.90228 1.20661 1.03397 0.96299 0.91454 1.19933 0.92888 0.97098 0.96262 1.21026 0.98519 0.98754 0.94530 1.21314 0.97756 0.96241 0.99402 1.18776 0.93843 0.94226 0.90941 1.84935 1.88698 1.36637 1.19583 1.18792 0.87071 0.94332 0.96174 1.84935 1.28616 1.44821 1.71383 1.21343 0.99524 0.95820 0.97740 0.96231 0.93760 0.92494 0.92148 0.85554 0.96178 0.91503 0.89902 0.91027 0.85261 0.85111 0.76225 0.76020 0.84652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.89 8.90 37.16 0.33 -3.56 16 2 C 0.19 4.55 2.17 -68.87 -0.15 4.40 16 3 H 0.03 0.62 6.37 -51.93 -0.33 0.29 16 4 C -0.59 -16.78 9.05 -34.44 -0.31 -17.09 16 5 H 0.06 1.96 8.06 -52.49 -0.42 1.54 16 6 C 0.03 0.98 5.19 -17.82 -0.09 0.89 16 7 N -0.90 -27.85 13.70 55.43 0.76 -27.09 16 8 Si 1.03 25.52 26.44 -169.99 -4.50 21.03 16 9 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.44 6.15 56.52 0.35 -6.09 16 12 N -0.67 -13.84 6.23 -107.95 -0.67 -14.51 16 13 C 0.06 1.05 5.47 -3.82 -0.02 1.03 16 14 C -0.08 -1.06 5.60 -27.89 -0.16 -1.21 16 15 C -0.06 -0.74 5.13 -104.61 -0.54 -1.28 16 16 C -0.11 -1.21 9.69 -39.57 -0.38 -1.59 16 17 C -0.13 -1.35 9.98 -39.46 -0.39 -1.74 16 18 C 0.07 0.76 6.72 -39.12 -0.26 0.49 16 19 O -0.49 -4.94 13.29 -34.24 -0.46 -5.39 16 20 C 0.08 0.96 6.72 -39.12 -0.26 0.70 16 21 O -0.49 -5.30 13.29 -34.23 -0.45 -5.75 16 22 C -0.13 -1.53 9.63 -39.46 -0.38 -1.91 16 23 H 0.02 0.37 7.64 -51.93 -0.40 -0.02 16 24 H 0.04 0.94 8.00 -51.93 -0.42 0.52 16 25 H 0.06 1.33 5.48 -51.93 -0.28 1.04 16 26 H 0.27 8.24 8.73 -40.82 -0.36 7.89 16 27 H 0.33 6.28 8.38 -39.29 -0.33 5.95 16 28 H 0.02 0.34 7.58 -51.93 -0.39 -0.06 16 29 H 0.07 1.20 8.05 -51.93 -0.42 0.78 16 30 H 0.08 1.10 8.09 -51.93 -0.42 0.68 16 31 H 0.07 0.85 8.08 -51.92 -0.42 0.43 16 32 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.38 1.77 9.06 45.56 0.41 2.18 16 35 H 0.38 2.06 9.06 45.56 0.41 2.47 16 36 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 304.32 15.07 4.59 4.59 Total: -1.00 -33.94 304.32 -6.83 -40.77 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -3.48 Total: 7.24 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -2.62 Total: -20.88 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.09 Total: -41.60 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -0.91 Total: -11.15 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -4.50 Total: 21.03 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.94 -6.83 -40.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309720722.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.667 kcal (2) G-P(sol) polarization free energy of solvation -33.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds