Wall clock time and date at job start Mon Mar 30 2020 03:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.46994 * 2 1 4 4 C 1.40324 * 126.43677 * 265.01942 * 3 2 1 5 5 C 1.36674 * 106.70439 * 180.02562 * 4 3 2 6 6 C 1.46518 * 125.99459 * 180.02562 * 5 4 3 7 7 O 1.21740 * 119.99866 * 5.56485 * 6 5 4 8 8 N 1.34776 * 119.99699 * 185.57578 * 6 5 4 9 9 C 1.46493 * 120.00323 * 5.59800 * 8 6 5 10 10 C 1.36848 * 119.99692 * 185.60184 * 8 6 5 11 11 H 1.08007 * 119.99960 * 336.56350 * 10 8 6 12 12 C 1.39032 * 120.00113 * 156.56514 * 10 8 6 13 13 N 1.31380 * 119.99777 * 340.84472 * 12 10 8 14 14 Si 1.86796 * 120.00050 * 160.84101 * 12 10 8 15 15 H 1.48493 * 109.47147 * 94.98162 * 14 12 10 16 16 H 1.48503 * 109.46984 * 214.98435 * 14 12 10 17 17 H 1.48502 * 109.47273 * 334.98200 * 14 12 10 18 18 O 1.34921 * 108.00791 * 0.02562 * 5 4 3 19 19 C 1.33962 * 109.37706 * 359.72781 * 18 5 4 20 20 C 1.50705 * 125.60686 * 180.27632 * 19 18 5 21 21 C 1.53005 * 109.46732 * 270.19303 * 20 19 18 22 22 H 1.09004 * 109.47185 * 59.99271 * 1 2 3 23 23 H 1.08999 * 109.46845 * 300.00105 * 1 2 3 24 24 H 1.09000 * 109.47115 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47076 * 119.99954 * 2 1 3 26 26 H 1.08999 * 109.46845 * 239.99895 * 2 1 3 27 27 H 1.07999 * 126.64845 * 359.97438 * 4 3 2 28 28 H 1.09002 * 109.47521 * 35.95054 * 9 8 6 29 29 H 1.08999 * 109.47419 * 155.95651 * 9 8 6 30 30 H 1.09004 * 109.46990 * 275.95361 * 9 8 6 31 31 H 0.97003 * 120.00078 * 179.97438 * 13 12 10 32 32 H 1.08995 * 109.47147 * 30.19309 * 20 19 18 33 33 H 1.08999 * 109.47473 * 150.19654 * 20 19 18 34 34 H 1.08995 * 109.47310 * 299.99906 * 21 20 19 35 35 H 1.08999 * 109.47292 * 60.00283 * 21 20 19 36 36 H 1.09004 * 109.46873 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4025 2.1739 -1.1247 5 6 2.7941 3.4000 -0.6649 6 6 3.2649 4.5178 -1.4869 7 8 3.2378 4.4341 -2.7011 8 7 3.7282 5.6384 -0.8987 9 6 3.8763 5.6938 0.5576 10 6 4.0601 6.7246 -1.6621 11 1 4.3188 6.5947 -2.7026 12 6 4.0646 7.9954 -1.0981 13 7 3.4090 8.2211 0.0178 14 14 5.0027 9.3819 -1.9270 15 1 4.0784 10.1558 -2.7940 16 1 5.5779 10.2782 -0.8921 17 1 6.0977 8.8137 -2.7537 18 8 2.6711 3.4004 0.6787 19 6 2.2067 2.2107 1.0829 20 6 1.9279 1.8165 2.5105 21 6 3.1878 1.2039 3.1257 22 1 -0.3634 0.5140 -0.8899 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 2.3827 1.8476 -2.1540 28 1 4.1958 4.7196 0.9277 29 1 4.6224 6.4443 0.8187 30 1 2.9207 5.9588 1.0102 31 1 3.4123 9.1077 0.4115 32 1 1.6371 2.6986 3.0808 33 1 1.1197 1.0856 2.5345 34 1 3.4786 0.3218 2.5554 35 1 3.9961 1.9348 3.1018 36 1 2.9861 0.9184 4.1581 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331189465.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:29 Heat of formation + Delta-G solvation = -31.350658 kcal Electronic energy + Delta-G solvation = -18696.882128 eV Core-core repulsion = 15761.668079 eV Total energy + Delta-G solvation = -2935.214049 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.13745 -38.16065 -35.26292 -34.76842 -33.28103 -31.74338 -30.76737 -28.29026 -26.31548 -25.00295 -24.06602 -22.95012 -21.14367 -20.13263 -18.69826 -17.06602 -16.36329 -15.96007 -15.25661 -14.91929 -14.68911 -14.11382 -13.87678 -13.69736 -13.49493 -12.95110 -12.62505 -12.41805 -12.28626 -12.22878 -11.84664 -11.48666 -11.42360 -11.32786 -11.27751 -11.10227 -10.83595 -10.60157 -10.40049 -10.36369 -9.15413 -9.10913 -8.74800 -7.86553 -7.71211 -6.48313 -3.94388 1.83373 2.81511 3.14764 3.20350 3.27062 3.36348 4.05801 4.25964 4.73293 4.92138 5.03438 5.05723 5.10017 5.22508 5.27164 5.48163 5.51001 5.65774 5.73302 5.78489 5.88880 5.90927 6.03090 6.15262 6.26675 6.30845 6.39227 6.45795 6.64780 6.80277 6.99949 7.13382 7.45631 7.55058 8.04981 8.38119 9.04243 9.26985 9.85487 10.56390 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.034645 B = 0.005686 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.994467 B = 4923.309815 C = 5464.292633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.049 4.049 3 C -0.180 4.180 4 C -0.162 4.162 5 C -0.021 4.021 6 C 0.505 3.495 7 O -0.575 6.575 8 N -0.420 5.420 9 C 0.109 3.891 10 C -0.310 4.310 11 H 0.105 0.895 12 C 0.034 3.966 13 N -0.862 5.862 14 Si 0.928 3.072 15 H -0.275 1.275 16 H -0.280 1.280 17 H -0.266 1.266 18 O -0.153 6.153 19 C -0.021 4.021 20 C -0.041 4.041 21 C -0.149 4.149 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.149 0.851 28 H 0.039 0.961 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.272 0.728 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.351 -12.004 7.564 14.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 C -0.182 4.182 4 C -0.184 4.184 5 C -0.074 4.074 6 C 0.294 3.706 7 O -0.462 6.462 8 N -0.135 5.135 9 C -0.035 4.035 10 C -0.438 4.438 11 H 0.123 0.877 12 C -0.171 4.171 13 N -0.499 5.499 14 Si 0.753 3.247 15 H -0.201 1.201 16 H -0.206 1.206 17 H -0.190 1.190 18 O -0.049 6.049 19 C -0.073 4.073 20 C -0.078 4.078 21 C -0.206 4.206 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.166 0.834 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.299 -11.567 7.324 13.883 hybrid contribution 0.264 0.731 -0.299 0.832 sum -2.035 -10.837 7.025 13.074 Atomic orbital electron populations 1.21754 0.95318 1.01042 1.02288 1.19868 0.95424 0.91236 1.02132 1.19979 1.08122 0.97803 0.92255 1.21555 1.04624 0.92518 0.99663 1.22821 1.06981 0.97992 0.79598 1.16503 0.85003 0.82735 0.86368 1.90685 1.61928 1.81440 1.12164 1.43556 1.51959 1.11264 1.06721 1.21592 1.02453 0.98756 0.80694 1.19732 1.43642 0.83834 0.96571 0.87729 1.25435 0.96369 0.98625 0.96700 1.70047 1.36435 1.23292 1.20155 0.85899 0.79944 0.79935 0.78897 1.20124 1.20579 1.19037 1.84309 1.64499 1.33166 1.22922 1.22353 1.03943 0.84659 0.96340 1.20022 0.98853 1.01225 0.87683 1.21770 0.97443 1.01212 1.00165 0.92462 0.92810 0.92796 0.91530 0.91247 0.83363 0.94224 0.90748 0.92600 0.91828 0.90201 0.89379 0.92351 0.92131 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.89 37.16 0.37 -1.23 16 2 C -0.05 -0.60 5.96 -27.88 -0.17 -0.76 16 3 C -0.18 -2.94 5.39 -104.93 -0.57 -3.50 16 4 C -0.16 -3.22 10.58 -39.36 -0.42 -3.63 16 5 C -0.02 -0.48 6.70 -36.81 -0.25 -0.72 16 6 C 0.51 13.59 7.58 -12.92 -0.10 13.49 16 7 O -0.58 -16.95 16.56 5.15 0.09 -16.87 16 8 N -0.42 -11.41 3.00 -123.75 -0.37 -11.79 16 9 C 0.11 2.59 7.62 59.84 0.46 3.05 16 10 C -0.31 -8.80 9.24 -15.02 -0.14 -8.93 16 11 H 0.11 3.06 7.42 -52.48 -0.39 2.68 16 12 C 0.03 0.91 4.88 -17.45 -0.09 0.83 16 13 N -0.86 -23.09 11.19 55.50 0.62 -22.47 16 14 Si 0.93 20.40 29.59 -169.99 -5.03 15.37 16 15 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 16 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 18 O -0.15 -3.12 7.54 4.89 0.04 -3.08 16 19 C -0.02 -0.34 6.57 -35.40 -0.23 -0.58 16 20 C -0.04 -0.48 6.16 -27.88 -0.17 -0.65 16 21 C -0.15 -1.53 9.89 37.16 0.37 -1.16 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.57 7.72 -51.93 -0.40 0.17 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.69 8.02 -51.93 -0.42 0.27 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.15 2.84 8.06 -52.49 -0.42 2.42 16 28 H 0.04 0.85 6.03 -51.93 -0.31 0.54 16 29 H 0.07 1.80 6.80 -51.93 -0.35 1.45 16 30 H 0.06 1.37 7.91 -51.93 -0.41 0.96 16 31 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.09 0.86 7.44 -51.93 -0.39 0.48 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 304.36 15.07 4.59 4.59 Total: -1.00 -31.39 304.36 -6.19 -37.58 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.19 Total: 0.48 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -0.93 Total: -3.81 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.25 Total: -34.25 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: 0.12 Total: -19.95 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.39 -6.19 -37.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331189465.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.231 kcal (2) G-P(sol) polarization free energy of solvation -31.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds