Wall clock time and date at job start Mon Mar 30 2020 03:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34505 * 125.79107 * 2 1 4 4 C 1.41380 * 106.84430 * 180.02562 * 3 2 1 5 5 C 1.34519 * 106.84044 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.78992 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47055 * 89.99744 * 6 5 4 8 8 C 1.50706 * 109.47238 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99507 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99544 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47059 * 180.02562 * 11 10 8 13 13 C 1.50696 * 109.47353 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00290 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99814 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00437 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00014 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46883 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47233 * 120.00145 * 17 15 13 20 20 H 1.48501 * 109.47363 * 240.00627 * 17 15 13 21 21 O 1.34302 * 108.41739 * 0.25743 * 5 4 3 22 22 H 1.09002 * 109.47143 * 90.00107 * 1 2 3 23 23 H 1.09000 * 109.46735 * 209.99554 * 1 2 3 24 24 H 1.08998 * 109.47237 * 329.99533 * 1 2 3 25 25 H 1.08003 * 126.58067 * 0.05624 * 3 2 1 26 26 H 1.08004 * 126.58432 * 180.02562 * 4 3 2 27 27 H 1.09001 * 109.47328 * 330.00015 * 6 5 4 28 28 H 1.09004 * 109.47043 * 209.99825 * 6 5 4 29 29 H 1.09001 * 109.46832 * 59.99966 * 7 6 5 30 30 H 1.09000 * 109.47611 * 300.00263 * 7 6 5 31 31 H 0.96994 * 119.99756 * 0.02562 * 10 8 7 32 32 H 1.08996 * 109.47366 * 299.99598 * 11 10 8 33 33 H 1.08992 * 109.47635 * 60.00246 * 11 10 8 34 34 H 1.09004 * 109.46832 * 299.99894 * 12 11 10 35 35 H 1.09001 * 109.47420 * 59.99456 * 12 11 10 36 36 H 0.96999 * 120.00397 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0910 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 3.5814 -0.7123 -0.0015 6 6 4.7706 -1.6379 -0.0030 7 6 5.1740 -1.9521 1.4390 8 6 6.3629 -2.8783 1.4376 9 8 6.8407 -3.2500 0.3867 10 7 6.8950 -3.2935 2.6042 11 6 8.0510 -4.1933 2.6027 12 6 8.4537 -4.5087 4.0448 13 6 9.6432 -5.4339 4.0433 14 1 10.0693 -5.7643 3.1075 15 6 10.1877 -5.8585 5.2367 16 7 9.6687 -5.4566 6.3764 17 14 11.6618 -7.0059 5.2350 18 1 12.0522 -7.3081 3.8344 19 1 12.7974 -6.3539 5.9353 20 1 11.3079 -8.2676 5.9338 21 8 2.2925 -1.0895 -0.0072 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 1.9666 2.1204 0.0009 26 1 4.5213 1.2433 -0.0004 27 1 5.6036 -1.1584 -0.5170 28 1 4.5103 -2.5631 -0.5173 29 1 4.3410 -2.4316 1.9531 30 1 5.4343 -1.0270 1.9534 31 1 6.5126 -2.9964 3.4446 32 1 7.7909 -5.1183 2.0881 33 1 8.8842 -3.7138 2.0892 34 1 8.7137 -3.5839 4.5599 35 1 7.6204 -4.9885 4.5581 36 1 10.0515 -5.7557 7.2159 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342654653.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:00 Heat of formation + Delta-G solvation = -72.003098 kcal Electronic energy + Delta-G solvation = -17118.733423 eV Core-core repulsion = 14181.756552 eV Total energy + Delta-G solvation = -2936.976871 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.53129 -40.69924 -36.68105 -35.14356 -34.81742 -34.07003 -32.21337 -31.34520 -28.12413 -26.51425 -24.46250 -22.85289 -22.62575 -21.39569 -20.97456 -18.66316 -18.18606 -17.22308 -17.08126 -16.83358 -16.57760 -16.39148 -15.54903 -15.22378 -14.63078 -14.39432 -14.25237 -13.83549 -13.78653 -13.71500 -13.33762 -13.20375 -13.06938 -12.95122 -12.64460 -12.51956 -12.24877 -12.05907 -11.67337 -11.45261 -10.90355 -10.77216 -10.61798 -10.00936 -9.18775 -8.25127 -6.35553 0.74195 1.40511 1.41553 1.54630 1.65465 1.67392 1.94813 2.31880 2.48414 3.09676 3.61374 3.87804 3.96428 4.09378 4.16356 4.22314 4.48673 4.49820 4.57463 4.60622 4.73222 4.76804 4.85746 4.88093 4.94535 5.02363 5.14948 5.29479 5.33792 5.49764 5.57887 5.67197 5.78455 6.15732 6.25546 6.63055 6.78215 7.28314 7.33985 8.86940 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.059081 B = 0.002877 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.814385 B = 9730.186873 C = 9915.421815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.029 4.029 3 C -0.223 4.223 4 C -0.211 4.211 5 C -0.027 4.027 6 C -0.017 4.017 7 C -0.123 4.123 8 C 0.507 3.493 9 O -0.590 6.590 10 N -0.719 5.719 11 C 0.139 3.861 12 C 0.022 3.978 13 C -0.546 4.546 14 H 0.058 0.942 15 C 0.006 3.994 16 N -0.927 5.927 17 Si 0.965 3.035 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.277 1.277 21 O -0.195 6.195 22 H 0.092 0.908 23 H 0.078 0.922 24 H 0.108 0.892 25 H 0.168 0.832 26 H 0.162 0.838 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.412 0.588 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.009 0.991 35 H 0.008 0.992 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.487 13.403 -10.037 24.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.079 4.079 3 C -0.242 4.242 4 C -0.230 4.230 5 C -0.076 4.076 6 C -0.055 4.055 7 C -0.163 4.163 8 C 0.295 3.705 9 O -0.472 6.472 10 N -0.369 5.369 11 C 0.015 3.985 12 C -0.016 4.016 13 C -0.585 4.585 14 H 0.077 0.923 15 C -0.193 4.193 16 N -0.567 5.567 17 Si 0.790 3.210 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.202 1.202 21 O -0.093 6.093 22 H 0.110 0.890 23 H 0.097 0.903 24 H 0.127 0.873 25 H 0.186 0.814 26 H 0.179 0.821 27 H 0.120 0.880 28 H 0.094 0.906 29 H 0.129 0.871 30 H 0.139 0.861 31 H 0.248 0.752 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.028 0.972 35 H 0.027 0.973 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.225 12.821 -10.587 23.941 hybrid contribution 0.857 -0.403 0.664 1.157 sum -16.368 12.419 -9.923 22.817 Atomic orbital electron populations 1.20478 0.82712 1.05168 1.04548 1.23225 0.95557 0.83838 1.05270 1.21902 0.92410 1.00438 1.09473 1.21910 0.99310 0.93751 1.08033 1.22452 0.82862 0.94961 1.07360 1.19732 0.91268 0.97973 0.96525 1.21630 0.95604 1.00322 0.98752 1.21221 0.85092 0.81144 0.83053 1.90664 1.64374 1.59547 1.32570 1.46180 1.32651 1.48901 1.09218 1.21214 0.86700 0.91826 0.98712 1.19145 0.95764 0.96036 0.90632 1.21510 1.14792 1.29276 0.92913 0.92348 1.25880 1.00301 0.97980 0.95091 1.70060 1.42651 1.46002 0.97954 0.85393 0.78734 0.78410 0.78484 1.18989 1.20171 1.20206 1.83959 1.16910 1.36350 1.72054 0.88994 0.90292 0.87349 0.81438 0.82069 0.88021 0.90582 0.87119 0.86103 0.75245 0.93676 0.93496 0.97237 0.97337 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.42 71.24 0.74 0.00 16 2 C -0.03 -0.55 7.32 24.83 0.18 -0.37 16 3 C -0.22 -4.03 10.81 22.19 0.24 -3.79 16 4 C -0.21 -4.25 10.81 22.19 0.24 -4.01 16 5 C -0.03 -0.61 6.58 24.83 0.16 -0.45 16 6 C -0.02 -0.40 5.04 29.85 0.15 -0.24 16 7 C -0.12 -2.71 5.68 29.85 0.17 -2.54 16 8 C 0.51 16.20 7.83 87.66 0.69 16.89 16 9 O -0.59 -23.62 15.98 -3.02 -0.05 -23.67 16 10 N -0.72 -24.33 5.56 -463.07 -2.57 -26.90 16 11 C 0.14 5.98 5.61 86.38 0.48 6.46 16 12 C 0.02 1.09 5.09 29.85 0.15 1.24 16 13 C -0.55 -30.63 9.11 25.60 0.23 -30.40 16 14 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 15 C 0.01 0.35 5.46 84.65 0.46 0.81 16 16 N -0.93 -54.40 13.29 21.45 0.28 -54.11 16 17 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 19 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 21 O -0.19 -4.65 10.65 -2.54 -0.03 -4.68 16 22 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 26 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 27 H 0.10 2.29 8.10 -2.39 -0.02 2.27 16 28 H 0.08 1.91 8.10 -2.38 -0.02 1.89 16 29 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.41 11.77 8.47 -92.71 -0.79 10.98 16 32 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 35 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -69.58 316.19 3.85 -65.73 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.28 Total: 14.31 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 3.90 Total: -16.39 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -2.29 Total: -81.02 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.08 Total: -28.35 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -69.58 3.85 -65.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342654653.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.272 kcal (2) G-P(sol) polarization free energy of solvation -69.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds