Wall clock time and date at job start Mon Mar 30 2020 04:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35638 * 117.00562 * 2 1 4 4 C 1.38442 * 120.26385 * 354.74813 * 3 2 1 5 5 C 1.38307 * 120.05382 * 180.24893 * 4 3 2 6 6 C 1.38823 * 120.58693 * 359.44855 * 5 4 3 7 7 C 1.50702 * 119.72764 * 180.30368 * 6 5 4 8 8 C 1.52999 * 109.47191 * 270.24851 * 7 6 5 9 9 N 1.46900 * 109.46994 * 150.24853 * 7 6 5 10 10 C 1.53000 * 109.47600 * 30.25028 * 7 6 5 11 11 O 1.42896 * 109.47151 * 180.02562 * 10 7 6 12 12 C 1.36492 * 120.53948 * 0.55008 * 6 5 4 13 13 C 1.40726 * 119.92680 * 359.73444 * 12 6 5 14 14 C 1.41146 * 120.28878 * 180.02562 * 13 12 6 15 15 H 1.07997 * 120.00315 * 151.26651 * 14 13 12 16 16 C 1.39942 * 120.00112 * 331.27348 * 14 13 12 17 17 N 1.30861 * 119.99983 * 161.62179 * 16 14 13 18 18 Si 1.86801 * 119.99754 * 341.62212 * 16 14 13 19 19 H 1.48497 * 109.47379 * 90.55351 * 18 16 14 20 20 H 1.48496 * 109.46961 * 210.55611 * 18 16 14 21 21 H 1.48499 * 109.47017 * 330.55602 * 18 16 14 22 22 H 1.08993 * 109.47256 * 184.54563 * 1 2 3 23 23 H 1.09006 * 109.46681 * 304.54411 * 1 2 3 24 24 H 1.09000 * 109.47227 * 64.54554 * 1 2 3 25 25 H 1.08006 * 119.97609 * 359.97438 * 4 3 2 26 26 H 1.07996 * 119.70758 * 179.70461 * 5 4 3 27 27 H 1.09004 * 109.46824 * 59.99552 * 8 7 6 28 28 H 1.08993 * 109.47325 * 180.02562 * 8 7 6 29 29 H 1.09006 * 109.46822 * 300.00363 * 8 7 6 30 30 H 1.00902 * 111.00221 * 176.04077 * 9 7 6 31 31 H 1.00901 * 111.00685 * 300.00189 * 9 7 6 32 32 H 1.09004 * 109.46521 * 300.00513 * 10 7 6 33 33 H 1.09006 * 109.46943 * 59.99587 * 10 7 6 34 34 H 0.96705 * 113.99367 * 180.02562 * 11 10 7 35 35 H 1.08001 * 120.03545 * 179.69843 * 12 6 5 36 36 H 0.97003 * 119.99636 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.3008 2.3708 -0.1095 5 6 1.9338 3.6006 -0.1142 6 6 3.3146 3.6848 0.0017 7 6 3.9836 5.0352 0.0012 8 6 4.3286 5.4329 -1.4353 9 7 5.2142 4.9722 0.8009 10 6 3.0360 6.0741 0.6044 11 8 3.6702 7.3546 0.6033 12 6 4.0716 2.5543 0.1110 13 6 3.4512 1.2912 0.1122 14 6 4.2266 0.1173 0.2254 15 1 3.8043 -0.7672 0.6788 16 6 5.5427 0.0995 -0.2499 17 7 6.3733 -0.8257 0.1582 18 14 6.1138 1.3966 -1.4668 19 1 6.6721 2.5573 -0.7277 20 1 7.1610 0.8211 -2.3485 21 1 4.9624 1.8425 -2.2917 22 1 -0.3633 -1.0244 0.0814 23 1 -0.3633 0.5828 0.8465 24 1 -0.3634 0.4417 -0.9279 25 1 0.2256 2.3171 -0.1957 26 1 1.3482 4.5035 -0.2046 27 1 3.4154 5.4795 -2.0287 28 1 4.8128 6.4094 -1.4356 29 1 5.0037 4.6927 -1.8650 30 1 5.7149 5.8474 0.7635 31 1 5.0129 4.7113 1.7546 32 1 2.1229 6.1207 0.0110 33 1 2.7902 5.7907 1.6279 34 1 3.1260 8.0633 0.9731 35 1 5.1457 2.6291 0.1958 36 1 7.2855 -0.8382 -0.1716 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380637465.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:10 Heat of formation + Delta-G solvation = -92.427779 kcal Electronic energy + Delta-G solvation = -19057.525574 eV Core-core repulsion = 16119.663023 eV Total energy + Delta-G solvation = -2937.862551 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.88371 -39.43917 -37.60501 -35.90944 -35.05001 -32.47322 -30.60546 -29.67885 -28.09888 -27.69175 -26.25034 -23.10875 -23.02266 -20.34711 -19.18474 -18.69252 -18.30356 -17.12314 -16.72947 -16.38306 -16.24960 -15.96447 -15.52448 -15.34349 -14.94399 -14.68169 -14.12481 -13.91535 -13.79216 -13.28860 -13.14125 -12.79592 -12.79104 -12.60939 -12.43092 -12.24139 -12.08196 -11.49092 -11.43183 -11.38902 -10.93407 -10.82910 -9.52457 -9.49575 -8.84461 -8.81905 -6.33379 0.77167 0.86178 1.34297 1.43137 1.49534 2.16739 2.61800 2.86871 3.23937 3.48752 3.69326 4.01903 4.17121 4.26281 4.29078 4.36626 4.48878 4.49691 4.67566 4.72961 4.74521 4.87276 4.94528 5.03970 5.15193 5.25991 5.30544 5.35544 5.72982 5.76843 5.98155 6.23225 6.33224 6.42928 6.55680 6.71860 6.86040 6.89527 7.13694 8.25026 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.017120 B = 0.010325 C = 0.007041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.096682 B = 2711.157588 C = 3975.618836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.344 6.344 3 C 0.012 3.988 4 C -0.169 4.169 5 C -0.189 4.189 6 C -0.074 4.074 7 C 0.165 3.835 8 C -0.128 4.128 9 N -0.842 5.842 10 C 0.062 3.938 11 O -0.581 6.581 12 C -0.195 4.195 13 C 0.042 3.958 14 C -0.470 4.470 15 H 0.049 0.951 16 C 0.048 3.952 17 N -0.855 5.855 18 Si 0.962 3.038 19 H -0.242 1.242 20 H -0.286 1.286 21 H -0.263 1.263 22 H 0.106 0.894 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.137 0.863 26 H 0.136 0.864 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.350 0.650 31 H 0.342 0.658 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.397 0.603 35 H 0.116 0.884 36 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.280 14.173 -0.700 16.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.259 6.259 3 C -0.033 4.033 4 C -0.188 4.188 5 C -0.208 4.208 6 C -0.075 4.075 7 C 0.072 3.928 8 C -0.186 4.186 9 N -0.373 5.373 10 C -0.018 4.018 11 O -0.389 6.389 12 C -0.215 4.215 13 C 0.039 3.961 14 C -0.500 4.500 15 H 0.068 0.932 16 C -0.165 4.165 17 N -0.483 5.483 18 Si 0.786 3.214 19 H -0.167 1.167 20 H -0.213 1.213 21 H -0.188 1.188 22 H 0.125 0.875 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.155 0.845 26 H 0.154 0.846 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.165 0.835 31 H 0.155 0.845 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.247 0.753 35 H 0.133 0.867 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.249 12.897 -1.440 14.865 hybrid contribution -0.653 0.703 0.566 1.114 sum -7.902 13.600 -0.875 15.754 Atomic orbital electron populations 1.23138 0.78281 1.04237 1.01412 1.85974 1.21841 1.28091 1.89958 1.19453 0.92286 0.84398 1.07148 1.21065 0.99462 0.91816 1.06475 1.20569 0.93136 0.96814 1.10305 1.19138 0.93525 0.93336 1.01494 1.19515 0.88698 0.89954 0.94662 1.21708 1.01620 1.01032 0.94191 1.58770 1.23054 1.38761 1.16743 1.22880 0.95576 0.83690 0.99656 1.86358 1.47242 1.18495 1.86803 1.20634 0.99597 0.90817 1.10412 1.17470 0.90152 0.93660 0.94801 1.19171 0.96410 0.98340 1.36038 0.93241 1.26731 0.95364 0.97609 0.96811 1.69744 1.06393 1.34144 1.37980 0.85609 0.78246 0.78784 0.78781 1.16696 1.21303 1.18759 0.87544 0.92504 0.92371 0.84547 0.84620 0.91509 0.90844 0.94502 0.83522 0.84495 0.91754 0.93421 0.75331 0.86668 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 9.82 113.37 1.11 1.86 16 2 O -0.34 -15.96 9.83 -89.52 -0.88 -16.84 16 3 C 0.01 0.57 6.72 23.08 0.15 0.73 16 4 C -0.17 -6.58 9.03 22.33 0.20 -6.38 16 5 C -0.19 -6.81 9.13 22.43 0.20 -6.60 16 6 C -0.07 -2.94 4.76 -20.13 -0.10 -3.04 16 7 C 0.16 5.27 0.86 2.78 0.00 5.27 16 8 C -0.13 -3.99 8.57 71.98 0.62 -3.37 16 9 N -0.84 -27.33 7.70 -154.52 -1.19 -28.52 16 10 C 0.06 1.49 5.41 71.98 0.39 1.88 16 11 O -0.58 -11.87 12.48 -148.98 -1.86 -13.73 16 12 C -0.20 -9.43 6.50 22.47 0.15 -9.28 16 13 C 0.04 2.25 5.14 -21.20 -0.11 2.14 16 14 C -0.47 -28.37 9.21 23.40 0.22 -28.16 16 15 H 0.05 3.28 7.88 -2.91 -0.02 3.26 16 16 C 0.05 2.76 5.41 85.25 0.46 3.22 16 17 N -0.86 -50.12 13.93 21.83 0.30 -49.81 16 18 Si 0.96 46.69 24.55 68.60 1.68 48.37 16 19 H -0.24 -11.31 6.45 99.48 0.64 -10.67 16 20 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 21 H -0.26 -13.09 7.04 99.48 0.70 -12.39 16 22 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 23 H 0.06 1.57 7.64 -2.38 -0.02 1.55 16 24 H 0.06 1.58 7.71 -2.39 -0.02 1.57 16 25 H 0.14 4.26 6.34 -2.91 -0.02 4.24 16 26 H 0.14 3.81 6.13 -2.91 -0.02 3.79 16 27 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.07 2.03 7.68 -2.39 -0.02 2.01 16 29 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.35 9.91 8.52 -89.69 -0.76 9.14 16 31 H 0.34 10.83 8.99 -89.69 -0.81 10.03 16 32 H 0.06 1.39 6.48 -2.39 -0.02 1.38 16 33 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.40 4.28 9.12 -74.05 -0.68 3.60 16 35 H 0.12 5.79 3.74 -2.91 -0.01 5.78 16 36 H 0.29 15.38 8.30 -92.71 -0.77 14.61 16 Total: -1.00 -69.92 290.71 0.18 -69.75 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: -1.18 Total: 32.52 kcal Atomic # 6 Polarization: -45.03 SS G_CDS: 3.30 Total: -41.73 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -0.89 Total: -78.33 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -2.74 Total: -30.57 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.68 Total: 48.37 kcal Total: -69.92 0.18 -69.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380637465.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.681 kcal (2) G-P(sol) polarization free energy of solvation -69.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds