Wall clock time and date at job start Mon Mar 30 2020 04:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35987 * 116.99785 * 2 1 4 4 C 1.38722 * 119.99879 * 359.97438 * 3 2 1 5 5 C 1.38108 * 119.99649 * 179.97438 * 4 3 2 6 6 C 1.38718 * 120.00163 * 359.83640 * 5 4 3 7 7 O 1.35980 * 119.99819 * 180.23352 * 6 5 4 8 8 C 1.38672 * 120.00154 * 0.41623 * 6 5 4 9 9 C 1.38153 * 119.99709 * 359.53601 * 8 6 5 10 10 C 1.50708 * 119.99865 * 180.27587 * 9 8 6 11 11 H 1.08997 * 109.47033 * 145.00656 * 10 9 8 12 12 C 1.53003 * 109.46775 * 265.00270 * 10 9 8 13 13 N 1.46891 * 109.46929 * 25.00109 * 10 9 8 14 14 C 1.46909 * 110.99938 * 155.00106 * 13 10 9 15 15 C 1.50692 * 109.47263 * 180.02562 * 14 13 10 16 16 H 1.07996 * 120.00271 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00036 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99954 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00147 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47250 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47365 * 119.99558 * 19 17 15 22 22 H 1.48505 * 109.47103 * 239.99689 * 19 17 15 23 23 H 1.09001 * 109.46371 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47054 * 299.99740 * 1 2 3 25 25 H 1.08995 * 109.46766 * 60.00219 * 1 2 3 26 26 H 1.08001 * 119.99836 * 359.97438 * 4 3 2 27 27 H 1.07999 * 119.99775 * 180.02562 * 5 4 3 28 28 H 0.96705 * 114.00141 * 270.18305 * 7 6 5 29 29 H 1.08002 * 120.00426 * 179.81905 * 8 6 5 30 30 H 1.09003 * 109.47434 * 299.99751 * 12 10 9 31 31 H 1.09002 * 109.47445 * 60.00240 * 12 10 9 32 32 H 1.09007 * 109.46972 * 180.02562 * 12 10 9 33 33 H 1.00897 * 111.00290 * 278.95420 * 13 10 9 34 34 H 1.08998 * 109.46711 * 300.00466 * 14 13 10 35 35 H 1.09000 * 109.46911 * 59.99794 * 14 13 10 36 36 H 0.97002 * 120.00259 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2908 2.3751 -0.0005 5 6 1.9178 3.6056 0.0000 6 6 3.3030 3.6782 0.0045 7 8 3.9203 4.8899 0.0098 8 6 4.0584 2.5153 -0.0003 9 6 3.4312 1.2843 0.0002 10 6 4.2521 0.0204 0.0013 11 1 3.7437 -0.7424 0.5909 12 6 4.4251 -0.4765 -1.4354 13 7 5.5711 0.2938 0.5870 14 6 6.1617 -0.9287 1.1480 15 6 7.5107 -0.6096 1.7390 16 1 7.8915 0.4003 1.7013 17 6 8.2593 -1.6071 2.3269 18 7 7.7958 -2.8370 2.3724 19 14 9.9311 -1.2113 3.0601 20 1 10.2202 0.2343 2.8818 21 1 9.9272 -1.5408 4.5080 22 1 10.9754 -2.0129 2.3728 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.2122 2.3184 -0.0014 27 1 1.3295 4.5113 0.0000 28 1 4.0991 5.2441 -0.8721 29 1 5.1369 2.5718 0.0003 30 1 3.4463 -0.6794 -1.8701 31 1 4.9335 0.2864 -2.0250 32 1 5.0184 -1.3909 -1.4346 33 1 6.1878 0.7149 -0.0915 34 1 5.5087 -1.3236 1.9262 35 1 6.2769 -1.6717 0.3588 36 1 8.3222 -3.5387 2.7863 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381413050.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:57 Heat of formation + Delta-G solvation = -57.488679 kcal Electronic energy + Delta-G solvation = -18269.091112 eV Core-core repulsion = 15332.743634 eV Total energy + Delta-G solvation = -2936.347478 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.29348 -38.27079 -36.76117 -35.18032 -32.84932 -30.90492 -29.36693 -28.59571 -27.00261 -25.93318 -23.50829 -22.24260 -21.42408 -20.19782 -17.96149 -17.87308 -16.44783 -16.31917 -15.71959 -15.09545 -14.69814 -14.32410 -14.08608 -14.00794 -13.54895 -13.43459 -12.77282 -12.62942 -12.15226 -11.97769 -11.85258 -11.63045 -11.29666 -11.23799 -10.81440 -10.74078 -10.67720 -10.59395 -10.14224 -9.84673 -9.14408 -8.66591 -8.45805 -7.83757 -7.26551 -5.99865 -4.01434 1.45307 1.47236 3.33682 3.36878 3.40904 3.46342 3.76117 4.37273 4.45955 4.79852 4.89968 5.06635 5.10548 5.26603 5.36247 5.40122 5.46990 5.53156 5.73414 5.75616 5.90373 6.04800 6.19454 6.21879 6.41640 6.47954 6.63727 6.70172 6.87158 7.31275 7.43339 7.48291 7.81720 7.82678 8.16313 8.42005 8.64054 9.08040 9.63292 11.11256 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.023522 B = 0.005379 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.083201 B = 5203.744478 C = 6026.648621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.310 6.310 3 C 0.117 3.883 4 C -0.198 4.198 5 C -0.118 4.118 6 C 0.061 3.939 7 O -0.497 6.497 8 C -0.080 4.080 9 C -0.070 4.070 10 C 0.125 3.875 11 H 0.087 0.913 12 C -0.169 4.169 13 N -0.683 5.683 14 C 0.195 3.805 15 C -0.512 4.512 16 H 0.063 0.937 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.285 1.285 23 H 0.097 0.903 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.127 0.873 27 H 0.124 0.876 28 H 0.381 0.619 29 H 0.143 0.857 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.328 0.672 34 H 0.028 0.972 35 H -0.011 1.011 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.257 9.516 -8.700 19.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.223 6.223 3 C 0.071 3.929 4 C -0.216 4.216 5 C -0.137 4.137 6 C 0.017 3.983 7 O -0.306 6.306 8 C -0.099 4.099 9 C -0.071 4.071 10 C 0.014 3.986 11 H 0.105 0.895 12 C -0.228 4.228 13 N -0.312 5.312 14 C 0.069 3.931 15 C -0.551 4.551 16 H 0.081 0.919 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.211 1.211 23 H 0.116 0.884 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.145 0.855 27 H 0.142 0.858 28 H 0.236 0.764 29 H 0.161 0.839 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.145 0.855 34 H 0.046 0.954 35 H 0.007 0.993 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.404 9.273 -7.396 18.659 hybrid contribution 0.836 -0.152 -0.791 1.161 sum -13.568 9.121 -8.187 18.284 Atomic orbital electron populations 1.23018 0.79030 1.03736 1.00958 1.86149 1.20738 1.26710 1.88746 1.18870 0.91774 0.84148 0.98067 1.20961 0.99622 0.91798 1.09260 1.21061 0.93902 0.97403 1.01347 1.18371 0.90130 0.84893 1.04921 1.84901 1.80070 1.32609 1.33015 1.21191 1.01283 0.90007 0.97426 1.19333 0.89851 0.96143 1.01803 1.20242 0.92008 0.92391 0.93952 0.89489 1.22404 1.01550 1.01513 0.97352 1.60772 1.02362 1.31095 1.37017 1.19580 0.94388 0.85309 0.93864 1.21227 1.01600 0.95205 1.37057 0.91914 1.24983 0.98413 0.94937 0.96259 1.69974 1.38044 1.00702 1.45045 0.86438 0.83701 0.78450 0.78798 1.19647 1.21030 1.21148 0.88412 0.92851 0.92998 0.85515 0.85797 0.76432 0.83928 0.92777 0.93039 0.91959 0.85473 0.95403 0.99302 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.48 9.63 -19.70 -0.19 -4.67 16 3 C 0.12 1.77 6.66 -39.24 -0.26 1.51 16 4 C -0.20 -2.53 9.03 -39.45 -0.36 -2.88 16 5 C -0.12 -1.52 9.98 -39.45 -0.39 -1.91 16 6 C 0.06 0.88 6.70 -39.24 -0.26 0.61 16 7 O -0.50 -6.41 13.50 -19.68 -0.27 -6.68 16 8 C -0.08 -1.30 9.26 -39.45 -0.37 -1.66 16 9 C -0.07 -1.18 5.07 -104.49 -0.53 -1.71 16 10 C 0.13 2.35 2.52 -68.86 -0.17 2.18 16 11 H 0.09 1.80 7.34 -51.93 -0.38 1.42 16 12 C -0.17 -2.80 9.14 37.16 0.34 -2.46 16 13 N -0.68 -14.87 5.24 -109.22 -0.57 -15.44 16 14 C 0.19 5.18 5.24 -4.97 -0.03 5.15 16 15 C -0.51 -14.69 9.32 -34.44 -0.32 -15.01 16 16 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 19 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 25 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 26 H 0.13 1.26 6.29 -52.49 -0.33 0.93 16 27 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.38 2.91 9.06 45.56 0.41 3.33 16 29 H 0.14 2.36 6.89 -52.49 -0.36 2.00 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 32 H 0.06 1.11 7.46 -51.93 -0.39 0.72 16 33 H 0.33 6.73 7.89 -39.29 -0.31 6.42 16 34 H 0.03 0.81 8.05 -51.93 -0.42 0.39 16 35 H -0.01 -0.30 7.44 -51.93 -0.39 -0.69 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 305.04 15.07 4.60 4.60 Total: -1.00 -32.86 305.04 -6.36 -39.22 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.19 Total: 5.83 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -1.46 Total: -13.43 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.16 Total: -41.85 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -0.46 Total: -11.34 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.86 -6.36 -39.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381413050.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.264 kcal (2) G-P(sol) polarization free energy of solvation -32.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds