Wall clock time and date at job start Mon Mar 30 2020 04:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35987 * 116.99785 * 2 1 4 4 C 1.38722 * 119.99879 * 359.97438 * 3 2 1 5 5 C 1.38108 * 119.99649 * 179.97438 * 4 3 2 6 6 C 1.38718 * 120.00163 * 359.83640 * 5 4 3 7 7 O 1.35980 * 119.99819 * 180.23352 * 6 5 4 8 8 C 1.38672 * 120.00154 * 0.41623 * 6 5 4 9 9 C 1.38153 * 119.99709 * 359.53601 * 8 6 5 10 10 C 1.50708 * 119.99865 * 180.27587 * 9 8 6 11 11 H 1.08997 * 109.47033 * 145.00656 * 10 9 8 12 12 C 1.53003 * 109.46775 * 265.00270 * 10 9 8 13 13 N 1.46891 * 109.46929 * 25.00109 * 10 9 8 14 14 C 1.46909 * 110.99938 * 155.00106 * 13 10 9 15 15 C 1.50692 * 109.47263 * 180.02562 * 14 13 10 16 16 H 1.07996 * 120.00271 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00036 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99954 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00147 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47250 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47365 * 119.99558 * 19 17 15 22 22 H 1.48505 * 109.47103 * 239.99689 * 19 17 15 23 23 H 1.09001 * 109.46371 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47054 * 299.99740 * 1 2 3 25 25 H 1.08995 * 109.46766 * 60.00219 * 1 2 3 26 26 H 1.08001 * 119.99836 * 359.97438 * 4 3 2 27 27 H 1.07999 * 119.99775 * 180.02562 * 5 4 3 28 28 H 0.96705 * 114.00141 * 270.18305 * 7 6 5 29 29 H 1.08002 * 120.00426 * 179.81905 * 8 6 5 30 30 H 1.09003 * 109.47434 * 299.99751 * 12 10 9 31 31 H 1.09002 * 109.47445 * 60.00240 * 12 10 9 32 32 H 1.09007 * 109.46972 * 180.02562 * 12 10 9 33 33 H 1.00897 * 111.00290 * 278.95420 * 13 10 9 34 34 H 1.08998 * 109.46711 * 300.00466 * 14 13 10 35 35 H 1.09000 * 109.46911 * 59.99794 * 14 13 10 36 36 H 0.97002 * 120.00259 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2908 2.3751 -0.0005 5 6 1.9178 3.6056 0.0000 6 6 3.3030 3.6782 0.0045 7 8 3.9203 4.8899 0.0098 8 6 4.0584 2.5153 -0.0003 9 6 3.4312 1.2843 0.0002 10 6 4.2521 0.0204 0.0013 11 1 3.7437 -0.7424 0.5909 12 6 4.4251 -0.4765 -1.4354 13 7 5.5711 0.2938 0.5870 14 6 6.1617 -0.9287 1.1480 15 6 7.5107 -0.6096 1.7390 16 1 7.8915 0.4003 1.7013 17 6 8.2593 -1.6071 2.3269 18 7 7.7958 -2.8370 2.3724 19 14 9.9311 -1.2113 3.0601 20 1 10.2202 0.2343 2.8818 21 1 9.9272 -1.5408 4.5080 22 1 10.9754 -2.0129 2.3728 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.2122 2.3184 -0.0014 27 1 1.3295 4.5113 0.0000 28 1 4.0991 5.2441 -0.8721 29 1 5.1369 2.5718 0.0003 30 1 3.4463 -0.6794 -1.8701 31 1 4.9335 0.2864 -2.0250 32 1 5.0184 -1.3909 -1.4346 33 1 6.1878 0.7149 -0.0915 34 1 5.5087 -1.3236 1.9262 35 1 6.2769 -1.6717 0.3588 36 1 8.3222 -3.5387 2.7863 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381413050.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:57 Heat of formation + Delta-G solvation = -82.159135 kcal Electronic energy + Delta-G solvation = -18270.160903 eV Core-core repulsion = 15332.743634 eV Total energy + Delta-G solvation = -2937.417270 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.38142 -39.27674 -38.22170 -36.43195 -34.88590 -32.47432 -30.60116 -29.83585 -28.00407 -27.79840 -24.89690 -23.87818 -22.78420 -21.60424 -19.20787 -18.88419 -18.32830 -17.54905 -16.78786 -16.61604 -16.18194 -15.70721 -15.38771 -15.34294 -14.94108 -14.80664 -14.25855 -13.95512 -13.66240 -13.44784 -13.21789 -12.99300 -12.79728 -12.67619 -12.48186 -12.27370 -12.16517 -11.94325 -11.73957 -11.41217 -11.08778 -10.67791 -9.80863 -9.14236 -8.88606 -8.22191 -6.33419 0.35264 0.38748 1.40840 1.42008 1.56007 2.40194 2.44600 2.67717 3.10977 3.38525 3.47535 3.84070 3.98724 4.17918 4.31912 4.32784 4.36868 4.44701 4.48768 4.74021 4.76871 4.81457 4.85296 5.00132 5.09351 5.21442 5.24609 5.33362 5.40177 5.51897 5.63944 5.77507 6.02974 6.44633 6.48405 6.71963 6.89455 6.97335 7.37407 8.89683 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.023522 B = 0.005379 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.083201 B = 5203.744478 C = 6026.648621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.337 6.337 3 C 0.108 3.892 4 C -0.188 4.188 5 C -0.110 4.110 6 C 0.060 3.940 7 O -0.507 6.507 8 C -0.098 4.098 9 C -0.095 4.095 10 C 0.128 3.872 11 H 0.058 0.942 12 C -0.158 4.158 13 N -0.680 5.680 14 C 0.212 3.788 15 C -0.534 4.534 16 H 0.064 0.936 17 C 0.001 3.999 18 N -0.935 5.935 19 Si 0.974 3.026 20 H -0.263 1.263 21 H -0.279 1.279 22 H -0.276 1.276 23 H 0.112 0.888 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.161 0.839 27 H 0.156 0.844 28 H 0.405 0.595 29 H 0.129 0.871 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.336 0.664 34 H -0.007 1.007 35 H -0.033 1.033 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.181 11.445 -9.083 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.062 3.938 4 C -0.206 4.206 5 C -0.128 4.128 6 C 0.015 3.985 7 O -0.319 6.319 8 C -0.117 4.117 9 C -0.097 4.097 10 C 0.018 3.982 11 H 0.076 0.924 12 C -0.217 4.217 13 N -0.311 5.311 14 C 0.085 3.915 15 C -0.572 4.572 16 H 0.082 0.918 17 C -0.197 4.197 18 N -0.575 5.575 19 Si 0.799 3.201 20 H -0.187 1.187 21 H -0.205 1.205 22 H -0.201 1.201 23 H 0.130 0.870 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.179 0.821 27 H 0.173 0.827 28 H 0.263 0.737 29 H 0.146 0.854 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.154 0.846 34 H 0.011 0.989 35 H -0.015 1.015 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.348 11.224 -7.812 20.556 hybrid contribution 0.995 -0.716 -0.703 1.413 sum -14.353 10.508 -8.514 19.721 Atomic orbital electron populations 1.23351 0.76508 1.05359 1.02461 1.86120 1.23450 1.26801 1.88714 1.18969 0.91315 0.85351 0.98147 1.21307 1.01172 0.90727 1.07395 1.21408 0.93329 0.98626 0.99476 1.18423 0.90850 0.84659 1.04560 1.84837 1.80069 1.31795 1.35216 1.21141 1.00857 0.90754 0.98906 1.19140 0.90806 0.95076 1.04669 1.20148 0.90215 0.93413 0.94411 0.92365 1.22270 1.02267 1.00839 0.96293 1.60636 1.03554 1.28736 1.38132 1.19179 0.93497 0.86523 0.92316 1.21566 1.02546 0.95459 1.37645 0.91750 1.25961 1.02728 0.94613 0.96426 1.70104 1.39853 1.01821 1.45708 0.85260 0.78341 0.78688 0.77846 1.18671 1.20483 1.20115 0.86988 0.91752 0.90887 0.82146 0.82684 0.73750 0.85351 0.91124 0.91565 0.93945 0.84626 0.98899 1.01542 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.34 -9.49 9.63 -93.41 -0.90 -10.39 16 3 C 0.11 3.16 6.66 22.49 0.15 3.31 16 4 C -0.19 -4.22 9.03 22.35 0.20 -4.02 16 5 C -0.11 -2.45 9.98 22.35 0.22 -2.23 16 6 C 0.06 1.60 6.70 22.49 0.15 1.75 16 7 O -0.51 -11.99 13.50 -93.33 -1.26 -13.25 16 8 C -0.10 -3.15 9.26 22.35 0.21 -2.94 16 9 C -0.10 -3.26 5.07 -19.78 -0.10 -3.36 16 10 C 0.13 5.06 2.52 44.17 0.11 5.17 16 11 H 0.06 2.59 7.34 -2.39 -0.02 2.57 16 12 C -0.16 -5.37 9.14 71.98 0.66 -4.72 16 13 N -0.68 -31.04 5.24 -499.46 -2.62 -33.66 16 14 C 0.21 11.90 5.24 85.55 0.45 12.35 16 15 C -0.53 -31.44 9.32 25.60 0.24 -31.20 16 16 H 0.06 3.69 7.81 -2.91 -0.02 3.66 16 17 C 0.00 0.04 5.46 84.66 0.46 0.51 16 18 N -0.93 -57.85 13.29 21.45 0.28 -57.56 16 19 Si 0.97 45.38 29.54 68.60 2.03 47.40 16 20 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.06 0.93 7.66 -2.39 -0.02 0.91 16 25 H 0.07 0.90 7.66 -2.39 -0.02 0.89 16 26 H 0.16 2.46 6.29 -2.91 -0.02 2.44 16 27 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 28 H 0.40 5.20 9.06 -74.05 -0.67 4.53 16 29 H 0.13 4.36 6.89 -2.91 -0.02 4.34 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.13 16 31 H 0.07 2.03 8.13 -2.39 -0.02 2.01 16 32 H 0.04 1.58 7.46 -2.38 -0.02 1.56 16 33 H 0.34 14.32 7.89 -89.70 -0.71 13.61 16 34 H -0.01 -0.44 8.05 -2.39 -0.02 -0.46 16 35 H -0.03 -1.96 7.44 -2.39 -0.02 -1.98 16 36 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -72.55 305.04 1.12 -71.43 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -0.28 Total: 20.00 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: 3.86 Total: -23.98 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -2.33 Total: -91.22 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -2.16 Total: -23.64 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -72.55 1.12 -71.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381413050.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.726 kcal (2) G-P(sol) polarization free energy of solvation -72.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds