Wall clock time and date at job start Mon Mar 30 2020 05:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35890 * 117.00349 * 2 1 4 4 C 1.38793 * 120.02748 * 0.02562 * 3 2 1 5 5 C 1.38156 * 120.05753 * 179.97438 * 4 3 2 6 6 C 1.38200 * 120.10826 * 0.02708 * 5 4 3 7 7 C 1.38752 * 120.05300 * 359.97376 * 6 5 4 8 8 O 1.35900 * 120.02774 * 179.72421 * 7 6 5 9 9 C 1.38620 * 120.02841 * 179.97438 * 3 2 1 10 10 C 1.50693 * 120.05197 * 0.02562 * 9 3 2 11 11 N 1.46904 * 109.47365 * 269.97832 * 10 9 3 12 12 C 1.46897 * 111.00338 * 180.02562 * 11 10 9 13 13 H 1.09008 * 109.46814 * 35.00077 * 12 11 10 14 14 C 1.53000 * 109.47071 * 274.99817 * 12 11 10 15 15 C 1.50692 * 109.47028 * 154.99864 * 12 11 10 16 16 H 1.08003 * 120.00716 * 34.99490 * 15 12 11 17 17 C 1.37884 * 119.99927 * 214.99922 * 15 12 11 18 18 N 1.31520 * 119.99929 * 184.91642 * 17 15 12 19 19 Si 1.86792 * 119.99999 * 4.91173 * 17 15 12 20 20 H 1.48503 * 109.47019 * 84.83530 * 19 17 15 21 21 H 1.48504 * 109.47399 * 204.83624 * 19 17 15 22 22 H 1.48503 * 109.47378 * 324.83265 * 19 17 15 23 23 H 1.08996 * 109.47471 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46615 * 299.99937 * 1 2 3 25 25 H 1.08995 * 109.47318 * 59.99521 * 1 2 3 26 26 H 1.08004 * 119.97366 * 0.02562 * 4 3 2 27 27 H 1.07992 * 119.94781 * 180.02562 * 5 4 3 28 28 H 1.07993 * 119.97226 * 180.02562 * 6 5 4 29 29 H 0.96696 * 114.00121 * 89.99950 * 8 7 6 30 30 H 1.09004 * 109.47498 * 29.97994 * 10 9 3 31 31 H 1.09004 * 109.47206 * 149.98080 * 10 9 3 32 32 H 1.00900 * 110.99793 * 56.04277 * 11 10 9 33 33 H 1.08994 * 109.47124 * 295.05010 * 14 12 11 34 34 H 1.09006 * 109.46718 * 55.04766 * 14 12 11 35 35 H 1.09002 * 109.46926 * 175.04564 * 14 12 11 36 36 H 0.97000 * 120.00139 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2907 2.3752 0.0005 5 6 1.9173 3.6064 0.0011 6 6 3.2973 3.6820 0.0005 7 6 4.0568 2.5208 0.0000 8 8 5.4137 2.5957 -0.0063 9 6 3.4303 1.2839 0.0005 10 6 4.2527 0.0212 0.0005 11 7 4.5199 -0.3892 1.3855 12 6 5.3218 -1.6194 1.4248 13 1 6.0264 -1.6204 0.5930 14 6 4.3983 -2.8340 1.3124 15 6 6.0800 -1.6834 2.7255 16 1 5.6339 -1.2978 3.6303 17 6 7.3436 -2.2343 2.7605 18 7 7.9663 -2.3787 3.9099 19 14 8.1707 -2.7756 1.1756 20 1 8.8464 -1.6120 0.5474 21 1 9.1744 -3.8283 1.4754 22 1 7.1490 -3.3171 0.2438 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 0.2121 2.3187 0.0014 27 1 1.3279 4.5113 0.0019 28 1 3.7848 4.6456 0.0013 29 1 5.8104 2.6196 0.8753 30 1 3.7053 -0.7690 -0.5134 31 1 5.1968 0.2025 -0.5132 32 1 3.6602 -0.5010 1.9018 33 1 3.7526 -2.8818 2.1892 34 1 3.7863 -2.7433 0.4149 35 1 4.9981 -3.7422 1.2529 36 1 8.8551 -2.7665 3.9346 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381618134.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:05 Heat of formation + Delta-G solvation = -79.043283 kcal Electronic energy + Delta-G solvation = -18602.689839 eV Core-core repulsion = 15665.407683 eV Total energy + Delta-G solvation = -2937.282156 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.37827 -39.32444 -37.83653 -36.81854 -34.65370 -32.93401 -30.33232 -30.02596 -28.10043 -27.25526 -25.81758 -23.04812 -22.36332 -21.86647 -19.64272 -19.02676 -17.86561 -17.54260 -16.96857 -16.66819 -16.32591 -15.88757 -15.57629 -15.35401 -15.03221 -14.52860 -14.43353 -13.86399 -13.79416 -13.21734 -13.12915 -13.00038 -12.91346 -12.64274 -12.56218 -12.12464 -11.97546 -11.87059 -11.77686 -11.35612 -11.15191 -10.68793 -9.62250 -9.16591 -8.95787 -8.25536 -6.26720 0.26866 0.44073 1.34349 1.36137 1.45139 2.33161 2.35666 2.66945 3.07070 3.50513 3.67617 3.90172 4.02123 4.13079 4.29480 4.41738 4.42921 4.48212 4.56406 4.66747 4.69066 4.75108 4.77381 4.82826 5.01875 5.06012 5.31854 5.41350 5.45180 5.54437 5.68589 5.71899 6.05513 6.45458 6.66858 6.74260 6.77637 6.84988 7.37072 8.91746 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.025564 B = 0.006342 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.045571 B = 4413.655725 C = 5057.209554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.136 3.864 4 C -0.219 4.219 5 C -0.061 4.061 6 C -0.190 4.190 7 C 0.146 3.854 8 O -0.508 6.508 9 C -0.163 4.163 10 C 0.115 3.885 11 N -0.671 5.671 12 C 0.183 3.817 13 H 0.031 0.969 14 C -0.161 4.161 15 C -0.492 4.492 16 H 0.033 0.967 17 C 0.014 3.986 18 N -0.949 5.949 19 Si 0.939 3.061 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.251 1.251 23 H 0.111 0.889 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.157 0.843 27 H 0.164 0.836 28 H 0.145 0.855 29 H 0.407 0.593 30 H 0.029 0.971 31 H 0.061 0.939 32 H 0.330 0.670 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.042 0.958 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.229 10.289 -10.777 22.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.090 3.910 4 C -0.237 4.237 5 C -0.079 4.079 6 C -0.209 4.209 7 C 0.101 3.899 8 O -0.321 6.321 9 C -0.165 4.165 10 C -0.014 4.014 11 N -0.301 5.301 12 C 0.074 3.926 13 H 0.049 0.951 14 C -0.220 4.220 15 C -0.530 4.530 16 H 0.051 0.949 17 C -0.183 4.183 18 N -0.590 5.590 19 Si 0.764 3.236 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.175 1.175 23 H 0.129 0.871 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.175 0.825 27 H 0.181 0.819 28 H 0.163 0.837 29 H 0.267 0.733 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.147 0.853 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.498 10.425 -11.235 21.796 hybrid contribution 0.128 -1.060 0.084 1.071 sum -15.370 9.366 -11.151 21.173 Atomic orbital electron populations 1.23349 0.76297 1.05337 1.02534 1.86084 1.23587 1.26915 1.88435 1.18831 0.90974 0.85415 0.95821 1.21518 1.01280 0.91479 1.09445 1.21171 0.93541 0.98159 0.94995 1.21548 0.94827 0.97951 1.06562 1.18245 0.83384 0.91264 0.97038 1.84638 1.16211 1.95952 1.35291 1.19589 0.91651 0.95659 1.09597 1.20461 0.97265 0.92713 0.90976 1.60803 1.22428 1.35519 1.11373 1.19490 0.92146 0.85788 0.95195 0.95068 1.22457 0.99720 1.00115 0.99744 1.21081 1.00509 1.37352 0.94100 0.94850 1.25773 0.97718 0.95712 0.99126 1.70040 1.14816 1.47130 1.27019 0.85877 0.78722 0.78476 0.80569 1.19609 1.21090 1.17510 0.87053 0.91423 0.91085 0.82517 0.81872 0.83688 0.73345 0.95257 0.92051 0.85329 0.93420 0.93541 0.93900 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.42 16 2 O -0.34 -9.12 9.54 -92.31 -0.88 -10.00 16 3 C 0.14 3.80 6.66 22.49 0.15 3.95 16 4 C -0.22 -4.58 9.04 22.38 0.20 -4.38 16 5 C -0.06 -1.16 10.04 22.24 0.22 -0.94 16 6 C -0.19 -4.50 9.98 22.38 0.22 -4.28 16 7 C 0.15 4.46 6.67 22.49 0.15 4.61 16 8 O -0.51 -16.08 12.54 -92.43 -1.16 -17.24 16 9 C -0.16 -5.38 5.42 -19.68 -0.11 -5.49 16 10 C 0.11 4.37 5.17 85.55 0.44 4.81 16 11 N -0.67 -28.95 6.22 -499.47 -3.11 -32.06 16 12 C 0.18 8.83 2.23 44.17 0.10 8.93 16 13 H 0.03 1.54 4.95 -2.38 -0.01 1.53 16 14 C -0.16 -6.93 9.16 71.98 0.66 -6.27 16 15 C -0.49 -28.66 9.19 25.60 0.24 -28.43 16 16 H 0.03 2.17 8.06 -2.91 -0.02 2.14 16 17 C 0.01 0.81 5.47 84.66 0.46 1.27 16 18 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 19 Si 0.94 45.56 26.99 68.60 1.85 47.41 16 20 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 22 H -0.25 -11.39 6.82 99.48 0.68 -10.71 16 23 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.07 0.91 7.66 -2.38 -0.02 0.89 16 25 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 26 H 0.16 2.23 6.29 -2.91 -0.02 2.21 16 27 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 28 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 29 H 0.41 11.12 9.06 -74.06 -0.67 10.45 16 30 H 0.03 1.11 6.75 -2.38 -0.02 1.10 16 31 H 0.06 2.48 7.44 -2.38 -0.02 2.47 16 32 H 0.33 13.92 8.47 -89.69 -0.76 13.16 16 33 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.76 7.36 -2.38 -0.02 1.74 16 35 H 0.04 1.85 8.14 -2.39 -0.02 1.84 16 36 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -71.24 301.68 0.50 -70.74 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: -0.36 Total: 25.71 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: 3.85 Total: -24.78 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -2.81 Total: -91.83 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -2.04 Total: -27.24 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.85 Total: 47.41 kcal Total: -71.24 0.50 -70.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381618134.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.304 kcal (2) G-P(sol) polarization free energy of solvation -71.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds