Wall clock time and date at job start Mon Mar 30 2020 05:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35892 * 117.00104 * 2 1 4 4 C 1.38789 * 120.02817 * 0.02562 * 3 2 1 5 5 C 1.38152 * 120.05684 * 179.97438 * 4 3 2 6 6 C 1.38195 * 120.11104 * 0.02800 * 5 4 3 7 7 C 1.38755 * 120.05111 * 359.97436 * 6 5 4 8 8 O 1.35899 * 120.02667 * 179.72977 * 7 6 5 9 9 C 1.38612 * 120.02755 * 179.97438 * 3 2 1 10 10 C 1.50703 * 120.05607 * 0.03007 * 9 3 2 11 11 N 1.46902 * 109.46918 * 269.97381 * 10 9 3 12 12 C 1.46896 * 111.00275 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.46970 * 325.00576 * 12 11 10 14 14 C 1.53001 * 109.46892 * 84.99740 * 12 11 10 15 15 C 1.50695 * 109.47454 * 204.99948 * 12 11 10 16 16 H 1.08001 * 119.99894 * 0.02562 * 15 12 11 17 17 C 1.37878 * 120.00141 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00394 * 180.02562 * 17 15 12 19 19 Si 1.86804 * 119.99837 * 0.02562 * 17 15 12 20 20 H 1.48497 * 109.46865 * 89.99989 * 19 17 15 21 21 H 1.48496 * 109.47192 * 209.99901 * 19 17 15 22 22 H 1.48498 * 109.47187 * 329.99723 * 19 17 15 23 23 H 1.09003 * 109.47450 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46823 * 299.99402 * 1 2 3 25 25 H 1.08997 * 109.47271 * 59.99711 * 1 2 3 26 26 H 1.08000 * 119.97466 * 359.95714 * 4 3 2 27 27 H 1.07999 * 119.94571 * 180.02562 * 5 4 3 28 28 H 1.07997 * 119.97664 * 179.97438 * 6 5 4 29 29 H 0.96697 * 114.00615 * 89.99764 * 8 7 6 30 30 H 1.08995 * 109.47322 * 29.97182 * 10 9 3 31 31 H 1.08994 * 109.47226 * 149.97723 * 10 9 3 32 32 H 1.00902 * 110.99914 * 303.95218 * 11 10 9 33 33 H 1.09007 * 109.47059 * 60.00494 * 14 12 11 34 34 H 1.09004 * 109.46933 * 179.97438 * 14 12 11 35 35 H 1.08997 * 109.47575 * 300.00155 * 14 12 11 36 36 H 0.96996 * 120.00526 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2906 2.3752 0.0005 5 6 1.9172 3.6064 0.0011 6 6 3.2971 3.6821 0.0005 7 6 4.0567 2.5209 -0.0001 8 8 5.4136 2.5959 -0.0062 9 6 3.4301 1.2840 0.0005 10 6 4.2527 0.0213 0.0004 11 7 4.5200 -0.3891 1.3854 12 6 5.3210 -1.6198 1.4246 13 1 5.0374 -2.2646 0.5928 14 6 6.8053 -1.2660 1.3123 15 6 5.0732 -2.3393 2.7253 16 1 4.3886 -1.9241 3.4502 17 6 5.7194 -3.5283 2.9895 18 7 5.5028 -4.1565 4.1243 19 14 6.9029 -4.2468 1.7354 20 1 8.2715 -3.7322 1.9948 21 1 6.9018 -5.7276 1.8454 22 1 6.4761 -3.8517 0.3690 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 0.2121 2.3187 0.0003 27 1 1.3277 4.5113 0.0019 28 1 3.7847 4.6457 0.0005 29 1 5.8103 2.6197 0.8753 30 1 3.7054 -0.7689 -0.5134 31 1 5.1967 0.2027 -0.5133 32 1 4.9698 0.3520 1.9017 33 1 7.0891 -0.6211 2.1442 34 1 7.3998 -2.1792 1.3419 35 1 6.9847 -0.7455 0.3716 36 1 5.9571 -4.9931 4.3100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381618151.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:08 Heat of formation + Delta-G solvation = -44.654444 kcal Electronic energy + Delta-G solvation = -18584.515855 eV Core-core repulsion = 15648.724911 eV Total energy + Delta-G solvation = -2935.790944 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.32924 -38.33286 -36.17945 -35.86881 -32.82049 -31.30325 -29.31078 -28.69997 -27.15391 -25.15589 -24.39606 -22.06572 -21.21528 -20.16725 -18.59172 -16.95546 -16.63240 -16.48831 -15.67361 -15.57757 -14.82417 -14.78107 -14.29500 -13.97861 -13.67707 -13.17800 -12.67059 -12.46517 -12.25824 -12.07099 -12.05704 -11.74206 -11.33139 -11.23241 -10.92922 -10.86251 -10.60982 -10.18368 -10.06657 -9.48618 -9.09635 -8.59690 -8.50219 -8.07547 -7.30654 -5.99267 -3.95902 1.24996 1.47640 3.29577 3.33478 3.40525 3.42476 3.68067 4.38407 4.45516 4.78131 4.98170 5.06295 5.12978 5.21611 5.30915 5.33921 5.50818 5.54201 5.56101 5.84868 5.94041 6.24080 6.30454 6.36609 6.37107 6.41435 6.55168 6.57276 6.66333 6.83099 7.17291 7.50529 7.70427 7.77801 7.97586 8.39162 8.76162 9.12462 9.63856 11.14419 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.026101 B = 0.006153 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.499128 B = 4549.221750 C = 5226.156359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.296 6.296 3 C 0.164 3.836 4 C -0.223 4.223 5 C -0.071 4.071 6 C -0.187 4.187 7 C 0.145 3.855 8 O -0.495 6.495 9 C -0.129 4.129 10 C 0.104 3.896 11 N -0.660 5.660 12 C 0.183 3.817 13 H 0.034 0.966 14 C -0.183 4.183 15 C -0.494 4.494 16 H 0.081 0.919 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.886 3.114 20 H -0.281 1.281 21 H -0.297 1.297 22 H -0.269 1.269 23 H 0.100 0.900 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.128 0.872 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.393 0.607 30 H 0.078 0.922 31 H 0.035 0.965 32 H 0.324 0.676 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.028 0.972 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.107 14.401 -9.314 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.208 6.208 3 C 0.117 3.883 4 C -0.242 4.242 5 C -0.090 4.090 6 C -0.206 4.206 7 C 0.099 3.901 8 O -0.305 6.305 9 C -0.131 4.131 10 C -0.025 4.025 11 N -0.289 5.289 12 C 0.074 3.926 13 H 0.052 0.948 14 C -0.241 4.241 15 C -0.533 4.533 16 H 0.099 0.901 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.225 1.225 22 H -0.195 1.195 23 H 0.118 0.882 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.145 0.855 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.249 0.751 30 H 0.096 0.904 31 H 0.053 0.947 32 H 0.141 0.859 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.655 13.673 -9.750 18.456 hybrid contribution 1.453 0.041 -0.315 1.488 sum -6.202 13.714 -10.064 18.106 Atomic orbital electron populations 1.23058 0.78829 1.04054 1.00799 1.86236 1.20775 1.26104 1.87717 1.18610 0.91294 0.84370 0.94017 1.21218 1.00012 0.92305 1.10654 1.20684 0.93900 0.96937 0.97471 1.21210 0.94051 0.97915 1.07393 1.18014 0.82948 0.90966 0.98148 1.84754 1.15983 1.96023 1.33762 1.19599 0.91405 0.95728 1.06382 1.20636 0.96479 0.92644 0.92700 1.60671 1.52137 1.06535 1.09607 1.19650 0.86255 0.88107 0.98565 0.94827 1.22859 1.01784 1.00492 0.99003 1.20985 1.25701 1.05293 1.01276 0.90112 1.24933 0.96715 0.96726 0.95084 1.69882 1.43689 1.17233 1.23416 0.86896 0.81523 0.77253 0.82667 1.20835 1.22498 1.19460 0.88160 0.92687 0.93118 0.85465 0.85725 0.85650 0.75093 0.90391 0.94726 0.85917 0.92818 0.93727 0.95293 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.30 16 2 O -0.30 -4.76 9.54 -19.40 -0.19 -4.95 16 3 C 0.16 2.54 6.66 -39.24 -0.26 2.28 16 4 C -0.22 -2.79 9.03 -39.41 -0.36 -3.14 16 5 C -0.07 -0.81 10.04 -39.63 -0.40 -1.21 16 6 C -0.19 -2.30 9.98 -39.41 -0.39 -2.69 16 7 C 0.14 2.08 6.67 -39.24 -0.26 1.82 16 8 O -0.49 -6.65 12.54 -19.42 -0.24 -6.90 16 9 C -0.13 -2.13 5.42 -104.33 -0.57 -2.70 16 10 C 0.10 1.95 5.17 -4.97 -0.03 1.92 16 11 N -0.66 -13.96 6.22 -109.23 -0.68 -14.64 16 12 C 0.18 4.43 2.17 -68.87 -0.15 4.28 16 13 H 0.03 0.86 6.86 -51.93 -0.36 0.50 16 14 C -0.18 -4.00 8.64 37.16 0.32 -3.68 16 15 C -0.49 -14.22 9.42 -34.44 -0.32 -14.55 16 16 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 17 C 0.07 1.94 5.45 -17.82 -0.10 1.85 16 18 N -0.90 -28.10 13.96 55.43 0.77 -27.32 16 19 Si 0.89 22.39 24.37 -169.99 -4.14 18.25 16 20 H -0.28 -6.91 6.87 56.52 0.39 -6.52 16 21 H -0.30 -7.53 7.11 56.52 0.40 -7.12 16 22 H -0.27 -6.58 6.53 56.52 0.37 -6.21 16 23 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 25 H 0.05 0.44 7.66 -51.93 -0.40 0.05 16 26 H 0.13 1.26 6.29 -52.49 -0.33 0.93 16 27 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 28 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.39 3.82 9.06 45.56 0.41 4.24 16 30 H 0.08 1.55 7.44 -51.93 -0.39 1.16 16 31 H 0.03 0.64 6.82 -51.93 -0.35 0.28 16 32 H 0.32 6.33 8.46 -39.29 -0.33 6.00 16 33 H 0.05 1.12 8.13 -51.92 -0.42 0.69 16 34 H 0.04 1.03 3.27 -51.93 -0.17 0.86 16 35 H 0.03 0.55 7.45 -51.93 -0.39 0.17 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 295.34 15.07 4.45 4.45 Total: -1.00 -33.42 295.34 -5.54 -38.96 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -3.99 Total: 6.64 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -1.52 Total: -14.50 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.09 Total: -41.96 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -0.43 Total: -11.84 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.14 Total: 18.25 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.42 -5.54 -38.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381618151.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.693 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds