Wall clock time and date at job start Mon Mar 30 2020 05:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35675 * 116.99856 * 2 1 4 4 C 1.39335 * 119.81591 * 359.97367 * 3 2 1 5 5 C 1.36421 * 120.18325 * 179.97438 * 4 3 2 6 6 C 1.40854 * 119.80875 * 0.02562 * 5 4 3 7 7 C 1.41217 * 120.17524 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00014 * 154.67107 * 7 6 5 9 9 C 1.39886 * 119.99968 * 334.67014 * 7 6 5 10 10 N 1.30881 * 120.00286 * 342.90646 * 9 7 6 11 11 Si 1.86804 * 119.99839 * 162.90834 * 9 7 6 12 12 H 1.48499 * 109.47285 * 59.99734 * 11 9 7 13 13 H 1.48498 * 109.47047 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47145 * 299.99801 * 11 9 7 15 15 C 1.40817 * 119.64447 * 0.02562 * 6 5 4 16 16 C 1.36453 * 119.80989 * 359.95757 * 15 6 5 17 17 C 1.50702 * 119.90775 * 180.29686 * 16 15 6 18 18 H 1.08997 * 109.47534 * 144.72275 * 17 16 15 19 19 N 1.46906 * 109.46863 * 24.72387 * 17 16 15 20 20 C 1.53001 * 109.47055 * 264.72524 * 17 16 15 21 21 H 1.09002 * 109.46984 * 59.99969 * 20 17 16 22 22 C 1.53001 * 109.47022 * 179.97438 * 20 17 16 23 23 O 1.42902 * 109.47061 * 299.99928 * 20 17 16 24 24 H 1.09006 * 109.47103 * 179.97438 * 1 2 3 25 25 H 1.08988 * 109.47739 * 300.00201 * 1 2 3 26 26 H 1.09005 * 109.46745 * 60.00849 * 1 2 3 27 27 H 1.07996 * 119.90874 * 0.02562 * 4 3 2 28 28 H 1.07999 * 120.09477 * 180.02562 * 5 4 3 29 29 H 0.96994 * 119.99981 * 180.02562 * 10 9 7 30 30 H 1.07994 * 120.09354 * 180.02562 * 15 6 5 31 31 H 1.00896 * 110.99755 * 300.00094 * 19 17 16 32 32 H 1.00894 * 110.99666 * 63.95687 * 19 17 16 33 33 H 1.09001 * 109.47051 * 299.99806 * 22 20 17 34 34 H 1.09002 * 109.46939 * 60.00342 * 22 20 17 35 35 H 1.09001 * 109.46650 * 180.02562 * 22 20 17 36 36 H 0.96707 * 113.99804 * 179.97438 * 23 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2823 2.3750 -0.0006 5 6 1.8938 3.5945 0.0000 6 6 3.3002 3.6725 0.0005 7 6 3.9412 4.9308 0.0016 8 1 4.9395 5.0279 0.4022 9 6 3.2833 6.0515 -0.5162 10 7 2.2405 5.8977 -1.2920 11 14 3.8930 7.7675 -0.1003 12 1 5.2925 7.9234 -0.5719 13 1 3.0308 8.7748 -0.7689 14 1 3.8410 7.9685 1.3702 15 6 4.0634 2.4892 0.0000 16 6 3.4362 1.2774 -0.0002 17 6 4.2508 0.0096 0.0060 18 1 3.7390 -0.7484 0.5989 19 7 5.5714 0.2790 0.5905 20 6 4.4212 -0.4942 -1.4286 21 1 4.9332 0.2638 -2.0214 22 6 5.2488 -1.7810 -1.4224 23 8 3.1366 -0.7562 -1.9971 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8898 26 1 -0.3633 0.5137 -0.8901 27 1 0.2041 2.3133 -0.0006 28 1 1.3013 4.4974 0.0000 29 1 1.7845 6.6747 -1.6513 30 1 5.1422 2.5406 0.0008 31 1 6.0663 0.9790 0.0584 32 1 5.4896 0.5514 1.5585 33 1 6.2287 -1.5807 -0.9889 34 1 4.7372 -2.5392 -0.8294 35 1 5.3706 -2.1396 -2.4445 36 1 3.1681 -1.0792 -2.9081 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390075521.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:02 Heat of formation + Delta-G solvation = -70.850010 kcal Electronic energy + Delta-G solvation = -18964.590230 eV Core-core repulsion = 16027.663361 eV Total energy + Delta-G solvation = -2936.926869 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.09664 -37.26701 -36.21591 -34.38419 -32.95953 -29.82749 -29.35912 -29.02968 -26.63401 -25.11640 -24.23605 -21.31845 -20.48927 -19.52201 -17.13116 -16.92002 -16.71330 -15.50982 -15.34850 -14.66223 -14.60563 -14.24287 -13.68298 -13.31658 -13.05926 -12.98723 -12.46835 -12.13246 -11.90567 -11.76120 -11.63056 -11.26738 -11.12838 -10.97625 -10.88806 -10.55230 -10.32933 -9.85086 -9.78468 -9.49110 -9.39862 -8.98443 -8.27615 -7.53216 -6.89528 -6.69559 -4.23289 2.81216 2.88872 3.07389 3.10010 3.23514 3.95587 4.46353 4.55211 4.64028 5.29134 5.45283 5.52610 5.64423 5.77348 5.78043 5.86152 5.96973 6.03136 6.10699 6.21809 6.28953 6.43522 6.56949 6.69271 6.82719 7.07675 7.27162 7.39129 7.48611 7.66093 7.85256 7.97523 8.00680 8.15993 8.21300 8.49578 8.69921 8.91477 9.02390 10.24907 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.024529 B = 0.006939 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.213336 B = 4034.081233 C = 4740.158871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.312 6.312 3 C 0.029 3.971 4 C -0.182 4.182 5 C -0.128 4.128 6 C 0.087 3.913 7 C -0.467 4.467 8 H 0.074 0.926 9 C 0.075 3.925 10 N -0.803 5.803 11 Si 0.906 3.094 12 H -0.267 1.267 13 H -0.280 1.280 14 H -0.265 1.265 15 C -0.199 4.199 16 C -0.117 4.117 17 C 0.152 3.848 18 H 0.084 0.916 19 N -0.839 5.839 20 C 0.117 3.883 21 H 0.046 0.954 22 C -0.173 4.173 23 O -0.544 6.544 24 H 0.078 0.922 25 H 0.037 0.963 26 H 0.040 0.960 27 H 0.094 0.906 28 H 0.119 0.881 29 H 0.279 0.721 30 H 0.096 0.904 31 H 0.339 0.661 32 H 0.345 0.655 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.043 0.957 36 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.036 -7.781 0.064 7.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.226 6.226 3 C -0.015 4.015 4 C -0.201 4.201 5 C -0.147 4.147 6 C 0.085 3.915 7 C -0.498 4.498 8 H 0.092 0.908 9 C -0.141 4.141 10 N -0.430 5.430 11 Si 0.731 3.269 12 H -0.191 1.191 13 H -0.205 1.205 14 H -0.190 1.190 15 C -0.219 4.219 16 C -0.119 4.119 17 C 0.041 3.959 18 H 0.102 0.898 19 N -0.369 5.369 20 C 0.057 3.943 21 H 0.064 0.936 22 C -0.230 4.230 23 O -0.346 6.346 24 H 0.097 0.903 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.113 0.887 28 H 0.137 0.863 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.152 0.848 32 H 0.157 0.843 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 0.927 -8.408 0.352 8.467 hybrid contribution -0.314 1.967 -0.439 2.040 sum 0.613 -6.441 -0.086 6.471 Atomic orbital electron populations 1.22656 0.81686 1.01356 0.99931 1.85917 1.18295 1.27899 1.90503 1.18325 0.91113 0.83015 1.09045 1.20674 0.97600 0.93339 1.08515 1.20955 0.95194 0.95640 1.02923 1.17481 0.91613 0.92206 0.90170 1.19372 1.01912 0.92143 1.36325 0.90769 1.25837 0.94252 1.01293 0.92699 1.69828 1.17701 1.32546 1.22916 0.86412 0.79551 0.81172 0.79795 1.19131 1.20463 1.18971 1.20344 0.97526 0.91415 1.12591 1.19072 0.90859 0.94953 1.07036 1.19892 0.87722 0.94719 0.93600 0.89765 1.59034 1.18433 1.52081 1.07302 1.21535 0.83728 0.94823 0.94198 0.93639 1.22410 1.01638 0.98360 1.00633 1.86741 1.28292 1.88579 1.30958 0.90317 0.94486 0.94130 0.88749 0.86294 0.91038 0.88621 0.84759 0.84261 0.90793 0.92508 0.93761 0.79266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 9.80 101.05 0.99 1.66 16 2 O -0.31 -6.55 8.38 -34.27 -0.29 -6.84 16 3 C 0.03 0.68 6.27 -38.78 -0.24 0.44 16 4 C -0.18 -4.38 8.96 -39.83 -0.36 -4.74 16 5 C -0.13 -3.35 8.64 -39.25 -0.34 -3.69 16 6 C 0.09 2.32 5.57 -106.80 -0.59 1.72 16 7 C -0.47 -12.36 9.04 -37.83 -0.34 -12.70 16 8 H 0.07 1.88 7.90 -52.49 -0.41 1.46 16 9 C 0.08 1.91 5.15 -17.34 -0.09 1.82 16 10 N -0.80 -21.03 10.96 55.54 0.61 -20.42 16 11 Si 0.91 18.84 29.59 -169.99 -5.03 13.81 16 12 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 13 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 14 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 15 C -0.20 -4.72 8.96 -39.25 -0.35 -5.07 16 16 C -0.12 -2.61 4.87 -104.87 -0.51 -3.12 16 17 C 0.15 2.83 2.54 -68.86 -0.17 2.66 16 18 H 0.08 1.67 7.69 -51.93 -0.40 1.27 16 19 N -0.84 -13.35 8.05 -5.65 -0.05 -13.39 16 20 C 0.12 1.98 3.30 -26.73 -0.09 1.89 16 21 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 22 C -0.17 -2.39 9.38 37.16 0.35 -2.04 16 23 O -0.54 -9.59 11.36 -50.78 -0.58 -10.17 16 24 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.04 0.59 7.65 -51.94 -0.40 0.20 16 26 H 0.04 0.68 7.65 -51.93 -0.40 0.28 16 27 H 0.09 2.05 6.27 -52.49 -0.33 1.73 16 28 H 0.12 3.22 6.19 -52.49 -0.32 2.90 16 29 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 30 H 0.10 2.08 6.24 -52.49 -0.33 1.76 16 31 H 0.34 5.35 7.20 -39.29 -0.28 5.06 16 32 H 0.34 5.30 9.06 -39.29 -0.36 4.94 16 33 H 0.07 1.01 7.60 -51.93 -0.39 0.61 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.36 4.72 9.08 45.56 0.41 5.13 16 LS Contribution 295.53 15.07 4.45 4.45 Total: -1.00 -29.27 295.53 -6.66 -35.93 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -4.03 Total: 17.80 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: -1.75 Total: -21.17 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.56 Total: -33.82 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.86 Total: -17.01 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.27 -6.66 -35.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390075521.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.918 kcal (2) G-P(sol) polarization free energy of solvation -29.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds