Wall clock time and date at job start Mon Mar 30 2020 05:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47361 * 2 1 4 4 C 1.50701 * 109.47445 * 239.99865 * 2 1 3 5 5 H 1.07998 * 120.00016 * 240.00133 * 4 2 1 6 6 C 1.37877 * 119.99912 * 59.99855 * 4 2 1 7 7 N 1.31519 * 119.99978 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00012 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47115 * 90.00156 * 8 6 4 10 10 H 1.48503 * 109.47213 * 210.00117 * 8 6 4 11 11 H 1.48500 * 109.47424 * 330.00194 * 8 6 4 12 12 N 1.46504 * 109.47224 * 119.99668 * 2 1 3 13 13 C 1.39935 * 120.00257 * 275.00476 * 12 2 1 14 14 C 1.38863 * 120.02144 * 179.97438 * 13 12 2 15 15 C 1.38104 * 119.98178 * 179.97438 * 14 13 12 16 16 C 1.38706 * 120.01893 * 359.97438 * 15 14 13 17 17 O 1.36005 * 119.97804 * 179.97438 * 16 15 14 18 18 C 1.42901 * 116.99661 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.47046 * 180.02562 * 18 17 16 20 20 O 1.42898 * 109.47286 * 64.99657 * 19 18 17 21 21 C 1.38701 * 120.03850 * 0.27854 * 16 15 14 22 22 C 1.38110 * 120.01747 * 359.44420 * 21 16 15 23 23 H 1.08995 * 109.47176 * 300.00315 * 1 2 3 24 24 H 1.08998 * 109.46723 * 60.00254 * 1 2 3 25 25 H 1.08997 * 109.46941 * 179.97438 * 1 2 3 26 26 H 0.96997 * 119.99967 * 180.02562 * 7 6 4 27 27 H 0.97005 * 119.99902 * 94.99862 * 12 2 1 28 28 H 1.08002 * 120.00354 * 359.95697 * 14 13 12 29 29 H 1.07998 * 119.99199 * 179.97438 * 15 14 13 30 30 H 1.08999 * 109.47144 * 300.00179 * 18 17 16 31 31 H 1.08998 * 109.47043 * 59.99778 * 18 17 16 32 32 H 1.08998 * 109.47363 * 184.99948 * 19 18 17 33 33 H 1.09000 * 109.46903 * 305.00059 * 19 18 17 34 34 H 0.96704 * 114.00103 * 179.97438 * 20 19 18 35 35 H 1.07998 * 119.99107 * 179.70516 * 21 16 15 36 36 H 1.07992 * 120.00938 * 180.27464 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1414 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0184 -0.6906 1.1962 13 6 2.1520 0.0075 2.4016 14 6 2.6143 -0.6467 3.5359 15 6 2.7463 0.0431 4.7249 16 6 2.4178 1.3893 4.7864 17 8 2.5476 2.0677 5.9579 18 6 2.1907 3.4514 5.9492 19 6 2.4020 4.0414 7.3450 20 8 3.7934 4.0119 7.6690 21 6 1.9509 2.0423 3.6553 22 6 1.8237 1.3554 2.4639 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.7090 1.1613 -3.4844 27 1 2.2491 -1.6318 1.1527 28 1 2.8703 -1.6949 3.4881 29 1 3.1055 -0.4657 5.6073 30 1 2.8156 3.9834 5.2319 31 1 1.1433 3.5547 5.6654 32 1 2.0468 5.0718 7.3616 33 1 1.8463 3.4537 8.0758 34 1 4.0018 4.3719 8.5420 35 1 1.6908 3.0893 3.7051 36 1 1.4644 1.8651 1.5822 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390663626.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:43 Heat of formation + Delta-G solvation = -64.123912 kcal Electronic energy + Delta-G solvation = -17802.002768 eV Core-core repulsion = 14865.367565 eV Total energy + Delta-G solvation = -2936.635204 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.65015 -37.86900 -36.65282 -34.98560 -32.52843 -30.62079 -30.19532 -29.03024 -26.56998 -25.19712 -23.53447 -22.11698 -21.06418 -19.91377 -18.05938 -17.69535 -17.11375 -15.80114 -15.47882 -15.38994 -14.81307 -14.50800 -14.07393 -13.92888 -13.31978 -13.01955 -12.63250 -12.48016 -12.25882 -11.99826 -11.74186 -11.38236 -11.20926 -11.04878 -10.80124 -10.61368 -10.39550 -10.28456 -10.21559 -9.99731 -9.09282 -8.80264 -8.49053 -8.41539 -6.28558 -6.14286 -4.23299 1.89244 2.27173 3.23170 3.30078 3.33131 3.51340 4.01843 4.27169 4.45133 4.64363 4.84862 4.98597 5.15805 5.17176 5.31423 5.41094 5.44996 5.57133 5.88800 5.95820 6.17801 6.51572 6.60482 6.75103 6.92344 6.95496 7.03869 7.07839 7.19242 7.39647 7.45227 7.66927 7.84127 7.92839 8.09325 8.41169 8.74762 8.95450 9.43996 10.90385 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.044777 B = 0.003894 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.176865 B = 7188.468905 C = 7415.863804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.268 3.732 3 H 0.038 0.962 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.729 5.729 13 C 0.209 3.791 14 C -0.182 4.182 15 C -0.099 4.099 16 C 0.040 3.960 17 O -0.317 6.317 18 C 0.061 3.939 19 C 0.079 3.921 20 O -0.565 6.565 21 C -0.154 4.154 22 C -0.166 4.166 23 H 0.012 0.988 24 H 0.088 0.912 25 H 0.028 0.972 26 H 0.264 0.736 27 H 0.389 0.611 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.377 0.623 35 H 0.117 0.883 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.786 4.759 15.879 16.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.166 3.834 3 H 0.056 0.944 4 C -0.567 4.567 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.353 5.353 13 C 0.101 3.899 14 C -0.205 4.205 15 C -0.118 4.118 16 C -0.006 4.006 17 O -0.232 6.232 18 C -0.014 4.014 19 C 0.001 3.999 20 O -0.370 6.370 21 C -0.173 4.173 22 C -0.189 4.189 23 H 0.031 0.969 24 H 0.107 0.893 25 H 0.047 0.953 26 H 0.074 0.926 27 H 0.222 0.778 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.224 0.776 35 H 0.135 0.865 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.721 4.658 15.099 15.817 hybrid contribution 0.135 -0.308 -0.559 0.652 sum 0.856 4.350 14.540 15.201 Atomic orbital electron populations 1.22185 0.98990 0.99500 1.00452 1.18674 0.90542 0.93379 0.80853 0.94402 1.21233 1.32008 1.13167 0.90333 0.92142 1.24879 0.94833 0.94982 0.99060 1.69878 1.36208 1.22587 1.23869 0.86448 0.79229 0.79302 0.82154 1.20566 1.21059 1.19844 1.45516 1.70482 1.11925 1.07414 1.17991 0.93337 0.91609 0.86982 1.20340 1.08711 0.99718 0.91781 1.19968 1.02695 0.91339 0.97799 1.18574 1.04697 0.92266 0.85060 1.86031 1.83985 1.21961 1.31195 1.22675 0.99965 0.81859 0.96950 1.22212 0.83096 0.98856 0.95717 1.86607 1.24103 1.86767 1.39553 1.20913 1.04072 0.99487 0.92829 1.20610 1.06895 0.93403 0.98021 0.96860 0.89307 0.95283 0.92624 0.77833 0.86242 0.86283 0.91738 0.91071 0.91855 0.92670 0.77620 0.86529 0.85362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.21 37.16 0.34 -3.31 16 2 C 0.27 6.59 2.25 -69.08 -0.16 6.44 16 3 H 0.04 1.02 6.48 -51.93 -0.34 0.68 16 4 C -0.53 -14.06 8.73 -34.44 -0.30 -14.36 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.47 11.32 55.43 0.63 -23.85 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 N -0.73 -15.52 5.25 -53.24 -0.28 -15.80 16 13 C 0.21 4.14 6.64 -83.69 -0.56 3.58 16 14 C -0.18 -3.17 9.89 -39.40 -0.39 -3.56 16 15 C -0.10 -1.66 9.98 -39.46 -0.39 -2.05 16 16 C 0.04 0.68 6.69 -39.24 -0.26 0.42 16 17 O -0.32 -5.03 10.10 -24.61 -0.25 -5.28 16 18 C 0.06 0.74 5.12 37.16 0.19 0.93 16 19 C 0.08 0.72 7.43 37.16 0.28 1.00 16 20 O -0.57 -6.00 13.62 -40.09 -0.55 -6.55 16 21 C -0.15 -2.65 9.03 -39.46 -0.36 -3.00 16 22 C -0.17 -3.25 8.86 -39.40 -0.35 -3.60 16 23 H 0.01 0.28 7.72 -51.93 -0.40 -0.12 16 24 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 27 H 0.39 7.72 8.55 -40.82 -0.35 7.37 16 28 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 29 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.06 0.80 7.67 -51.93 -0.40 0.40 16 31 H 0.07 0.74 7.65 -51.93 -0.40 0.34 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.38 1.97 9.12 45.56 0.42 2.39 16 35 H 0.12 1.71 6.29 -52.49 -0.33 1.38 16 36 H 0.13 2.65 6.12 -52.49 -0.32 2.33 16 LS Contribution 302.55 15.07 4.56 4.56 Total: -1.00 -30.46 302.55 -7.05 -37.51 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -4.09 Total: 9.58 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -2.05 Total: -15.87 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.35 Total: -39.65 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.79 Total: -11.83 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.46 -7.05 -37.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390663626.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.616 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds