Wall clock time and date at job start Mon Mar 30 2020 03:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34511 * 125.79351 * 2 1 4 4 C 1.41382 * 106.84273 * 180.02562 * 3 2 1 5 5 C 1.34514 * 106.84119 * 0.22801 * 4 3 2 6 6 C 1.50703 * 125.78881 * 179.77255 * 5 4 3 7 7 H 1.09003 * 109.47341 * 335.36389 * 6 5 4 8 8 C 1.50703 * 109.46751 * 95.36304 * 6 5 4 9 9 H 1.08003 * 120.00072 * 245.53365 * 8 6 5 10 10 C 1.37878 * 120.00209 * 65.54093 * 8 6 5 11 11 N 1.31519 * 119.99833 * 355.24978 * 10 8 6 12 12 Si 1.86794 * 120.00222 * 175.25300 * 10 8 6 13 13 H 1.48502 * 109.47149 * 90.00022 * 12 10 8 14 14 H 1.48501 * 109.47044 * 209.99642 * 12 10 8 15 15 H 1.48498 * 109.47323 * 329.99928 * 12 10 8 16 16 N 1.46897 * 109.47181 * 215.36309 * 6 5 4 17 17 C 1.47010 * 111.00329 * 187.84029 * 16 6 5 18 18 C 1.53093 * 109.26131 * 177.60877 * 17 16 6 19 19 O 1.43016 * 109.25976 * 56.84288 * 18 17 16 20 20 C 1.43016 * 113.74186 * 301.33567 * 19 18 17 21 21 C 1.47016 * 110.99909 * 64.19832 * 16 6 5 22 22 O 1.34298 * 108.41666 * 359.62943 * 5 4 3 23 23 H 1.08997 * 109.46988 * 89.99861 * 1 2 3 24 24 H 1.09003 * 109.47486 * 210.00169 * 1 2 3 25 25 H 1.09006 * 109.46957 * 330.00389 * 1 2 3 26 26 H 1.08007 * 126.57971 * 359.97438 * 3 2 1 27 27 H 1.08009 * 126.57926 * 179.97438 * 4 3 2 28 28 H 0.96997 * 120.00229 * 179.97438 * 11 10 8 29 29 H 1.08999 * 109.50370 * 297.54315 * 17 16 6 30 30 H 1.09002 * 109.50847 * 57.66823 * 17 16 6 31 31 H 1.08999 * 109.50798 * 296.91351 * 18 17 16 32 32 H 1.09001 * 109.50963 * 176.77841 * 18 17 16 33 33 H 1.09003 * 109.50042 * 298.73466 * 20 19 18 34 34 H 1.08997 * 109.54585 * 178.62732 * 20 19 18 35 35 H 1.08992 * 109.50933 * 302.33290 * 21 16 6 36 36 H 1.09006 * 109.50215 * 62.46128 * 21 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6319 -0.0006 5 6 3.5813 -0.7123 -0.0061 6 6 4.7705 -1.6380 -0.0135 7 1 5.6297 -1.1223 -0.4424 8 6 5.0896 -2.0572 1.3984 9 1 6.0200 -1.7532 1.8548 10 6 4.1937 -2.8290 2.1076 11 7 3.0216 -3.1212 1.5874 12 14 4.6447 -3.4595 3.8070 13 1 4.2215 -2.4702 4.8305 14 1 3.9567 -4.7522 4.0540 15 1 6.1142 -3.6575 3.8878 16 7 4.4607 -2.8267 -0.8191 17 6 5.5228 -3.8360 -0.6991 18 6 5.1324 -5.0782 -1.5042 19 8 4.8927 -4.7033 -2.8634 20 6 3.8637 -3.7221 -3.0172 21 6 4.2413 -2.4661 -2.2274 22 8 2.2924 -1.0894 -0.0005 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8901 0.5138 26 1 1.9666 2.1204 -0.0004 27 1 4.5213 1.2432 -0.0012 28 1 2.3915 -3.6644 2.0861 29 1 6.4567 -3.4294 -1.0872 30 1 5.6508 -4.1069 0.3489 31 1 4.2275 -5.5157 -1.0825 32 1 5.9421 -5.8068 -1.4650 33 1 2.9219 -4.1202 -2.6394 34 1 3.7551 -3.4698 -4.0720 35 1 3.4338 -1.7372 -2.2949 36 1 5.1548 -2.0377 -2.6399 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396768216.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:49 Heat of formation + Delta-G solvation = -35.384748 kcal Electronic energy + Delta-G solvation = -19660.588302 eV Core-core repulsion = 16725.199322 eV Total energy + Delta-G solvation = -2935.388980 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.98762 -40.22809 -37.10121 -34.25506 -33.58775 -32.69633 -31.90584 -30.23151 -27.02257 -26.83484 -24.55768 -23.47189 -22.18528 -21.16803 -20.62185 -18.52542 -17.55456 -16.94406 -16.78784 -16.55850 -16.32526 -15.75460 -15.58736 -15.31964 -14.86404 -14.37680 -14.11211 -13.67409 -13.55702 -13.35763 -13.21260 -12.98655 -12.80118 -12.62569 -12.38885 -12.23567 -12.20399 -11.95388 -11.37398 -11.28345 -10.55993 -10.50501 -10.37139 -8.79213 -8.72300 -7.97221 -6.22880 1.30226 1.41356 1.44765 1.51738 2.01862 2.44149 2.59980 2.96250 3.16610 3.41364 4.11573 4.18210 4.27879 4.33305 4.33946 4.42215 4.45954 4.55558 4.69066 4.73476 4.78298 4.80288 4.83782 4.95157 4.99448 5.15769 5.19615 5.26046 5.39360 5.63971 5.69058 5.97622 6.04137 6.22625 6.37382 6.69709 6.76872 7.04106 7.46246 8.97871 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.014693 B = 0.012321 C = 0.007984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.267805 B = 2272.013812 C = 3506.168229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.077 4.077 3 C -0.223 4.223 4 C -0.290 4.290 5 C 0.066 3.934 6 C 0.280 3.720 7 H 0.012 0.988 8 C -0.561 4.561 9 H 0.053 0.947 10 C 0.056 3.944 11 N -0.830 5.830 12 Si 0.935 3.065 13 H -0.286 1.286 14 H -0.280 1.280 15 H -0.267 1.267 16 N -0.508 5.508 17 C 0.043 3.957 18 C 0.071 3.929 19 O -0.400 6.400 20 C 0.075 3.925 21 C 0.020 3.980 22 O -0.138 6.138 23 H 0.089 0.911 24 H 0.063 0.937 25 H 0.100 0.900 26 H 0.158 0.842 27 H 0.136 0.864 28 H 0.256 0.744 29 H 0.017 0.983 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.115 0.885 33 H 0.047 0.953 34 H 0.117 0.883 35 H 0.061 0.939 36 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.249 1.148 -5.394 5.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.127 4.127 3 C -0.242 4.242 4 C -0.310 4.310 5 C 0.012 3.988 6 C 0.173 3.827 7 H 0.030 0.970 8 C -0.599 4.599 9 H 0.071 0.929 10 C -0.153 4.153 11 N -0.461 5.461 12 Si 0.761 3.239 13 H -0.212 1.212 14 H -0.206 1.206 15 H -0.192 1.192 16 N -0.233 5.233 17 C -0.085 4.085 18 C -0.005 4.005 19 O -0.319 6.319 20 C -0.002 4.002 21 C -0.109 4.109 22 O -0.031 6.031 23 H 0.107 0.893 24 H 0.082 0.918 25 H 0.119 0.881 26 H 0.176 0.824 27 H 0.153 0.847 28 H 0.065 0.935 29 H 0.035 0.965 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.133 0.867 33 H 0.065 0.935 34 H 0.135 0.865 35 H 0.080 0.920 36 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -2.894 0.446 -5.360 6.107 hybrid contribution 0.983 0.645 1.209 1.686 sum -1.911 1.091 -4.151 4.698 Atomic orbital electron populations 1.20230 0.83544 1.03833 1.03749 1.23229 0.95905 0.85290 1.08320 1.21563 0.92176 0.99550 1.10874 1.21533 0.98489 0.94188 1.16770 1.23245 0.83679 0.93835 0.98028 1.17763 0.85512 0.85639 0.93785 0.97034 1.20920 1.04981 1.35980 0.98000 0.92858 1.25469 0.94518 0.95595 0.99739 1.70261 1.05591 1.33374 1.36898 0.85946 0.78763 0.77811 0.81409 1.21224 1.20554 1.19186 1.62175 1.43650 1.12031 1.05444 1.22409 0.91565 0.93301 1.01205 1.22707 1.01043 0.95774 0.81015 1.87846 1.57452 1.59700 1.26869 1.22615 0.90069 0.87038 1.00460 1.22714 0.99372 0.98232 0.90560 1.84320 1.16166 1.33592 1.69046 0.89277 0.91771 0.88137 0.82417 0.84655 0.93458 0.96507 0.90281 0.93680 0.86706 0.93451 0.86486 0.92008 0.95958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.68 10.42 71.23 0.74 -0.94 16 2 C -0.08 -3.16 7.32 24.83 0.18 -2.97 16 3 C -0.22 -8.87 10.81 22.19 0.24 -8.63 16 4 C -0.29 -13.09 10.81 22.19 0.24 -12.85 16 5 C 0.07 3.26 4.33 24.83 0.11 3.37 16 6 C 0.28 14.03 2.11 43.43 0.09 14.12 16 7 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 8 C -0.56 -29.87 7.19 25.60 0.18 -29.69 16 9 H 0.05 2.84 7.82 -2.91 -0.02 2.82 16 10 C 0.06 2.93 4.64 84.65 0.39 3.32 16 11 N -0.83 -45.12 10.72 21.45 0.23 -44.89 16 12 Si 0.93 41.88 29.54 68.60 2.03 43.91 16 13 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 14 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 15 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 16 N -0.51 -23.52 3.66 -878.81 -3.22 -26.73 16 17 C 0.04 1.85 5.27 86.31 0.45 2.30 16 18 C 0.07 2.58 7.01 72.01 0.50 3.09 16 19 O -0.40 -14.51 10.83 -148.98 -1.61 -16.13 16 20 C 0.07 2.60 7.01 72.01 0.50 3.10 16 21 C 0.02 0.81 5.46 86.31 0.47 1.28 16 22 O -0.14 -6.86 8.97 -2.44 -0.02 -6.88 16 23 H 0.09 2.20 8.14 -2.39 -0.02 2.19 16 24 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.10 2.36 8.14 -2.38 -0.02 2.35 16 26 H 0.16 5.07 8.06 -2.91 -0.02 5.05 16 27 H 0.14 5.64 8.06 -2.91 -0.02 5.62 16 28 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 29 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 3.66 6.37 -2.39 -0.02 3.64 16 31 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 35 H 0.06 2.60 7.06 -2.39 -0.02 2.58 16 36 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 Total: -1.00 -61.52 294.50 2.57 -58.94 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 1.05 Total: 16.30 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 4.11 Total: -24.51 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: -2.99 Total: -71.63 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -1.63 Total: -23.01 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -61.52 2.57 -58.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396768216.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.558 kcal (2) G-P(sol) polarization free energy of solvation -61.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds