Wall clock time and date at job start Mon Mar 30 2020 03:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34514 * 125.78437 * 2 1 4 4 C 1.41392 * 106.83770 * 180.02562 * 3 2 1 5 5 C 1.34508 * 106.83909 * 0.02562 * 4 3 2 6 6 C 1.50706 * 125.78732 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47318 * 19.98896 * 6 5 4 8 8 C 1.50699 * 109.46817 * 259.99517 * 6 5 4 9 9 H 1.08003 * 120.00271 * 119.99808 * 8 6 5 10 10 C 1.37879 * 120.00161 * 300.00309 * 8 6 5 11 11 N 1.31516 * 120.00080 * 359.97438 * 10 8 6 12 12 Si 1.86803 * 120.00268 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46941 * 59.99593 * 12 10 8 14 14 H 1.48500 * 109.47185 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.46680 * 299.99699 * 12 10 8 16 16 N 1.46893 * 109.47176 * 139.99839 * 6 5 4 17 17 C 1.47023 * 110.99760 * 303.63046 * 16 6 5 18 18 C 1.53096 * 109.25593 * 177.60964 * 17 16 6 19 19 O 1.43020 * 109.25918 * 56.84771 * 18 17 16 20 20 C 1.43014 * 113.74161 * 301.33028 * 19 18 17 21 21 C 1.47013 * 111.00291 * 179.97438 * 16 6 5 22 22 O 1.34300 * 108.42349 * 0.26033 * 5 4 3 23 23 H 1.08998 * 109.47128 * 90.00157 * 1 2 3 24 24 H 1.09010 * 109.46679 * 209.99537 * 1 2 3 25 25 H 1.08993 * 109.47383 * 329.99205 * 1 2 3 26 26 H 1.07994 * 126.58493 * 0.05947 * 3 2 1 27 27 H 1.07998 * 126.57477 * 180.02562 * 4 3 2 28 28 H 0.96999 * 120.00285 * 180.02562 * 11 10 8 29 29 H 1.08995 * 109.50724 * 297.54269 * 17 16 6 30 30 H 1.08999 * 109.50359 * 57.67989 * 17 16 6 31 31 H 1.09006 * 109.50774 * 296.91669 * 18 17 16 32 32 H 1.08997 * 109.54632 * 176.80371 * 18 17 16 33 33 H 1.09000 * 109.50770 * 298.73512 * 20 19 18 34 34 H 1.08994 * 109.54118 * 178.62681 * 20 19 18 35 35 H 1.09007 * 109.50484 * 302.32806 * 21 16 6 36 36 H 1.09008 * 109.50798 * 62.40593 * 21 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5814 -0.7120 -0.0015 6 6 4.7707 -1.6377 -0.0019 7 1 5.6505 -1.0990 0.3500 8 6 5.0157 -2.1401 -1.4014 9 1 5.9581 -1.9400 -1.8897 10 6 4.0369 -2.8550 -2.0585 11 7 2.8895 -3.0989 -1.4638 12 14 4.3409 -3.4783 -3.7930 13 1 5.5126 -4.3907 -3.7929 14 1 3.1424 -4.2125 -4.2723 15 1 4.6096 -2.3276 -4.6924 16 7 4.5053 -2.7762 0.8876 17 6 4.1763 -2.3185 2.2454 18 6 3.8494 -3.5307 3.1215 19 8 4.9576 -4.4347 3.1085 20 6 5.3050 -4.9010 1.8019 21 6 5.6463 -3.7030 0.9120 22 8 2.2925 -1.0893 -0.0073 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3634 0.8898 0.5139 26 1 1.9665 2.1204 0.0009 27 1 4.5211 1.2435 -0.0004 28 1 2.2010 -3.6022 -1.9260 29 1 5.0284 -1.7846 2.6660 30 1 3.3129 -1.6543 2.2064 31 1 2.9647 -4.0339 2.7313 32 1 3.6601 -3.2017 4.1433 33 1 4.4627 -5.4440 1.3733 34 1 6.1686 -5.5626 1.8686 35 1 5.8558 -4.0490 -0.1002 36 1 6.5225 -3.1912 1.3102 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396768217.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:55 Heat of formation + Delta-G solvation = -16.281846 kcal Electronic energy + Delta-G solvation = -19670.155479 eV Core-core repulsion = 16735.594863 eV Total energy + Delta-G solvation = -2934.560616 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.26603 -38.62909 -35.36449 -32.39833 -31.89946 -31.06578 -30.35992 -28.53335 -25.29968 -25.15287 -22.99735 -21.71031 -20.44509 -19.56346 -18.90190 -16.61678 -15.94682 -15.32972 -15.00685 -14.87246 -14.57918 -14.20591 -13.94558 -13.60423 -13.22907 -12.69752 -12.51538 -12.24923 -12.02032 -11.78018 -11.51878 -11.35019 -10.97819 -10.84582 -10.77597 -10.65771 -10.53734 -10.07273 -9.68112 -9.50876 -8.94646 -8.67011 -8.55025 -7.05486 -7.00046 -5.98953 -4.19973 3.00907 3.27213 3.32538 3.35155 3.73616 4.23555 4.37217 4.43701 4.90763 5.32135 5.65519 5.68134 5.77361 5.86093 5.88760 5.96418 5.99957 6.00286 6.05709 6.18933 6.25737 6.31126 6.35848 6.53526 6.57344 6.77655 6.84022 6.95903 7.03914 7.33896 7.62555 7.69869 7.74877 7.91927 8.20917 8.42716 8.62055 8.90494 9.48238 10.98409 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.014708 B = 0.012323 C = 0.007993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.213828 B = 2271.546252 C = 3502.072862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.068 4.068 3 C -0.219 4.219 4 C -0.282 4.282 5 C 0.093 3.907 6 C 0.281 3.719 7 H 0.022 0.978 8 C -0.542 4.542 9 H 0.062 0.938 10 C 0.088 3.912 11 N -0.811 5.811 12 Si 0.883 3.117 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.277 1.277 16 N -0.495 5.495 17 C 0.017 3.983 18 C 0.070 3.930 19 O -0.398 6.398 20 C 0.065 3.935 21 C 0.038 3.962 22 O -0.103 6.103 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.260 0.740 29 H 0.020 0.980 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.329 1.261 4.916 5.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.119 4.119 3 C -0.239 4.239 4 C -0.302 4.302 5 C 0.039 3.961 6 C 0.176 3.824 7 H 0.039 0.961 8 C -0.579 4.579 9 H 0.080 0.920 10 C -0.123 4.123 11 N -0.442 5.442 12 Si 0.711 3.289 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.203 1.203 16 N -0.221 5.221 17 C -0.112 4.112 18 C -0.007 4.007 19 O -0.318 6.318 20 C -0.012 4.012 21 C -0.090 4.090 22 O 0.005 5.995 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.143 0.857 27 H 0.144 0.856 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -1.969 0.546 4.890 5.300 hybrid contribution 0.674 0.635 -1.134 1.464 sum -1.295 1.181 3.756 4.145 Atomic orbital electron populations 1.20016 0.87134 1.02319 1.02126 1.22248 0.93834 0.86139 1.09715 1.21202 0.93264 0.97957 1.11435 1.21218 0.96970 0.94463 1.17516 1.23181 0.83666 0.93138 0.96122 1.17849 0.85562 0.85530 0.93459 0.96084 1.20732 1.01844 1.37583 0.97787 0.91986 1.24979 0.94968 0.95254 0.97126 1.70083 1.03882 1.34507 1.35732 0.86816 0.77774 0.79102 0.85255 1.20072 1.21193 1.20285 1.62452 1.37334 1.17497 1.04819 1.22702 1.00050 0.96736 0.91708 1.22555 0.89146 0.90127 0.98889 1.87842 1.51213 1.63689 1.29006 1.22673 0.99804 0.95941 0.82762 1.22437 0.91603 0.93998 1.00950 1.84463 1.15607 1.31404 1.68034 0.91546 0.91448 0.91040 0.85743 0.85624 0.92993 0.96207 0.90765 0.92604 0.89992 0.92618 0.89819 0.88600 0.96452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.42 36.01 0.38 -0.58 16 2 C -0.07 -1.44 7.32 -35.62 -0.26 -1.70 16 3 C -0.22 -4.54 10.81 -39.70 -0.43 -4.97 16 4 C -0.28 -6.37 10.80 -39.70 -0.43 -6.80 16 5 C 0.09 2.29 4.05 -35.62 -0.14 2.14 16 6 C 0.28 6.91 2.11 -70.02 -0.15 6.76 16 7 H 0.02 0.52 8.13 -51.93 -0.42 0.10 16 8 C -0.54 -14.16 7.32 -34.44 -0.25 -14.41 16 9 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 10 C 0.09 2.30 5.23 -17.82 -0.09 2.21 16 11 N -0.81 -21.90 10.37 55.43 0.57 -21.32 16 12 Si 0.88 20.41 29.54 -169.99 -5.02 15.39 16 13 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 14 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 N -0.50 -11.34 3.89 -229.11 -0.89 -12.23 16 17 C 0.02 0.35 5.37 -3.71 -0.02 0.33 16 18 C 0.07 1.27 7.01 37.21 0.26 1.53 16 19 O -0.40 -7.56 10.83 -35.23 -0.38 -7.95 16 20 C 0.07 1.19 7.01 37.20 0.26 1.45 16 21 C 0.04 0.80 5.42 -3.72 -0.02 0.78 16 22 O -0.10 -2.56 8.20 5.72 0.05 -2.51 16 23 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 27 H 0.13 2.61 8.06 -52.49 -0.42 2.19 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.52 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 1.59 6.59 -51.93 -0.34 1.25 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.10 2.11 7.01 -51.92 -0.36 1.75 16 36 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 LS Contribution 294.25 15.07 4.43 4.43 Total: -1.00 -28.78 294.25 -7.46 -36.24 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.32 Total: 1.22 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -0.90 Total: -13.27 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: -0.32 Total: -33.55 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -0.33 Total: -10.46 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.78 -7.46 -36.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396768217.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.957 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds