Wall clock time and date at job start Mon Mar 30 2020 03:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34506 * 125.79503 * 2 1 4 4 C 1.41386 * 106.84574 * 180.02562 * 3 2 1 5 5 C 1.34513 * 106.83662 * 0.02562 * 4 3 2 6 6 C 1.50697 * 125.78743 * 180.02562 * 5 4 3 7 7 C 1.52992 * 109.47648 * 89.99923 * 6 5 4 8 8 C 1.50697 * 109.47648 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99927 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00282 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00000 * 179.97438 * 10 8 7 12 12 H 1.08994 * 109.47185 * 325.00421 * 11 10 8 13 13 C 1.53003 * 109.46991 * 85.00701 * 11 10 8 14 14 C 1.50702 * 109.47119 * 205.00085 * 11 10 8 15 15 H 1.08007 * 119.99981 * 354.48131 * 14 11 10 16 16 C 1.37872 * 120.00181 * 174.48618 * 14 11 10 17 17 N 1.31507 * 120.00188 * 164.58940 * 16 14 11 18 18 Si 1.86797 * 119.99894 * 344.86064 * 16 14 11 19 19 H 1.48501 * 109.47054 * 269.72685 * 18 16 14 20 20 H 1.48506 * 109.47355 * 29.72399 * 18 16 14 21 21 H 1.48500 * 109.47516 * 149.72369 * 18 16 14 22 22 O 1.34308 * 108.42395 * 0.26112 * 5 4 3 23 23 H 1.08994 * 109.47270 * 89.99318 * 1 2 3 24 24 H 1.08999 * 109.47656 * 209.99524 * 1 2 3 25 25 H 1.09006 * 109.46833 * 329.99743 * 1 2 3 26 26 H 1.07999 * 126.57671 * 0.06455 * 3 2 1 27 27 H 1.07999 * 126.58044 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.47433 * 329.99616 * 6 5 4 29 29 H 1.09001 * 109.47090 * 210.00163 * 6 5 4 30 30 H 1.09001 * 109.46954 * 59.99399 * 7 6 5 31 31 H 1.09001 * 109.47071 * 300.00252 * 7 6 5 32 32 H 0.97002 * 120.00007 * 0.02562 * 10 8 7 33 33 H 1.08997 * 109.47143 * 173.55043 * 13 11 10 34 34 H 1.09005 * 109.46269 * 293.54281 * 13 11 10 35 35 H 1.08992 * 109.47288 * 53.53833 * 13 11 10 36 36 H 0.97004 * 120.00365 * 355.18112 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0910 0.0000 4 6 3.6309 0.6319 -0.0006 5 6 3.5813 -0.7123 -0.0015 6 6 4.7705 -1.6380 -0.0019 7 6 5.1727 -1.9523 1.4404 8 6 6.3622 -2.8776 1.4401 9 8 6.8409 -3.2494 0.3896 10 7 6.8941 -3.2918 2.6070 11 6 8.0501 -4.1917 2.6066 12 1 7.9747 -4.8797 1.7646 13 6 9.3353 -3.3710 2.4811 14 6 8.0779 -4.9745 3.8941 15 1 7.3647 -4.7551 4.6750 16 6 9.0136 -5.9707 4.0753 17 7 9.2449 -6.4445 5.2800 18 14 9.9585 -6.6421 2.6104 19 1 9.2198 -7.7921 2.0298 20 1 10.1031 -5.5780 1.5847 21 1 11.3037 -7.0899 3.0520 22 8 2.2923 -1.0895 -0.0073 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5137 25 1 -0.3633 0.8900 0.5139 26 1 1.9666 2.1203 0.0010 27 1 4.5213 1.2431 -0.0004 28 1 5.6040 -1.1587 -0.5152 29 1 4.5106 -2.5632 -0.5164 30 1 4.3391 -2.4317 1.9538 31 1 5.4325 -1.0272 1.9549 32 1 6.5110 -2.9947 3.4472 33 1 10.1981 -4.0271 2.5956 34 1 9.3681 -2.8953 1.5009 35 1 9.3550 -2.6058 3.2571 36 1 8.8092 -6.0462 6.0498 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000471963899.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:14 Heat of formation + Delta-G solvation = -43.750465 kcal Electronic energy + Delta-G solvation = -17705.931819 eV Core-core repulsion = 14770.180074 eV Total energy + Delta-G solvation = -2935.751745 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.67049 -39.11474 -35.16855 -33.99078 -33.26188 -32.45107 -31.22409 -29.67516 -26.80864 -24.84191 -23.63264 -21.83150 -20.77651 -20.11647 -19.53978 -17.81046 -16.88314 -16.27212 -15.90520 -15.41800 -15.12201 -14.34515 -13.78742 -13.63558 -13.29887 -13.14131 -12.99738 -12.89756 -12.70567 -12.42328 -12.17047 -12.02567 -11.82151 -11.62320 -11.36566 -11.00295 -10.55124 -10.13269 -9.96768 -9.67170 -9.24830 -9.02922 -8.41896 -8.33863 -8.16196 -6.57507 -4.22786 1.60535 2.50445 2.79392 3.22954 3.41329 3.44988 3.59723 3.98101 4.43711 4.55887 4.80650 4.92436 5.01527 5.02951 5.17337 5.17852 5.22273 5.37925 5.46230 5.67617 5.70083 5.76402 5.96971 6.00017 6.15004 6.38770 6.45823 6.53473 6.66995 6.95735 7.10830 7.28169 7.38751 7.65874 8.23383 8.46811 8.69590 8.96777 9.46223 10.81880 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.047379 B = 0.003747 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.841485 B = 7471.456618 C = 7623.593100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.023 4.023 3 C -0.212 4.212 4 C -0.211 4.211 5 C -0.003 4.003 6 C -0.023 4.023 7 C -0.138 4.138 8 C 0.502 3.498 9 O -0.559 6.559 10 N -0.703 5.703 11 C 0.240 3.760 12 H 0.043 0.957 13 C -0.154 4.154 14 C -0.617 4.617 15 H 0.061 0.939 16 C 0.040 3.960 17 N -0.900 5.900 18 Si 1.039 2.961 19 H -0.284 1.284 20 H -0.267 1.267 21 H -0.284 1.284 22 O -0.174 6.174 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.145 0.855 27 H 0.147 0.853 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.393 0.607 33 H 0.057 0.943 34 H 0.030 0.970 35 H 0.043 0.957 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.908 14.234 -8.820 21.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.073 4.073 3 C -0.231 4.231 4 C -0.230 4.230 5 C -0.053 4.053 6 C -0.061 4.061 7 C -0.179 4.179 8 C 0.287 3.713 9 O -0.438 6.438 10 N -0.350 5.350 11 C 0.137 3.863 12 H 0.061 0.939 13 C -0.213 4.213 14 C -0.655 4.655 15 H 0.079 0.921 16 C -0.167 4.167 17 N -0.533 5.533 18 Si 0.866 3.134 19 H -0.210 1.210 20 H -0.192 1.192 21 H -0.210 1.210 22 O -0.071 6.071 23 H 0.097 0.903 24 H 0.094 0.906 25 H 0.105 0.895 26 H 0.163 0.837 27 H 0.165 0.835 28 H 0.120 0.880 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.226 0.774 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.525 12.503 -9.979 20.317 hybrid contribution -1.288 1.591 1.082 2.315 sum -13.814 14.094 -8.897 21.647 Atomic orbital electron populations 1.20274 0.85314 1.03935 1.03340 1.22417 0.93987 0.84320 1.06622 1.21544 0.92817 0.99225 1.09490 1.21584 0.98163 0.93920 1.09370 1.22556 0.82944 0.94684 1.05107 1.19864 0.90841 0.98369 0.97019 1.21670 0.97910 1.00490 0.97785 1.20426 0.84536 0.81639 0.84659 1.90650 1.63430 1.58370 1.31389 1.46302 1.33076 1.48512 1.07133 1.19063 0.80933 0.87678 0.98658 0.93942 1.22440 0.99951 1.00281 0.98598 1.22112 1.20278 1.22092 1.01041 0.92052 1.25695 0.95457 0.93961 1.01564 1.70825 1.40967 1.42821 0.98641 0.84175 0.76798 0.76848 0.75572 1.21022 1.19185 1.20963 1.83981 1.16523 1.35064 1.71506 0.90288 0.90592 0.89510 0.83704 0.83472 0.88006 0.89265 0.88991 0.88936 0.77377 0.92451 0.95135 0.93835 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.42 36.00 0.38 -0.12 16 2 C -0.02 -0.26 7.32 -35.63 -0.26 -0.52 16 3 C -0.21 -2.28 10.81 -39.70 -0.43 -2.71 16 4 C -0.21 -2.48 10.81 -39.70 -0.43 -2.91 16 5 C 0.00 -0.04 6.57 -35.63 -0.23 -0.27 16 6 C -0.02 -0.31 5.04 -27.89 -0.14 -0.45 16 7 C -0.14 -1.88 5.68 -27.89 -0.16 -2.04 16 8 C 0.50 9.38 7.79 -10.99 -0.09 9.29 16 9 O -0.56 -12.35 15.64 5.56 0.09 -12.26 16 10 N -0.70 -14.15 5.07 -54.93 -0.28 -14.43 16 11 C 0.24 5.80 2.11 -69.08 -0.15 5.65 16 12 H 0.04 1.11 6.21 -51.93 -0.32 0.79 16 13 C -0.15 -3.49 8.76 37.16 0.33 -3.16 16 14 C -0.62 -16.79 9.02 -34.44 -0.31 -17.10 16 15 H 0.06 1.74 7.96 -52.48 -0.42 1.32 16 16 C 0.04 1.12 5.33 -17.82 -0.09 1.02 16 17 N -0.90 -26.92 13.69 55.43 0.76 -26.16 16 18 Si 1.04 25.09 26.17 -169.99 -4.45 20.65 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.27 -6.09 5.53 56.52 0.31 -5.78 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 O -0.17 -2.33 10.65 5.67 0.06 -2.27 16 23 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 27 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 28 H 0.10 1.31 8.10 -51.93 -0.42 0.89 16 29 H 0.09 1.25 8.10 -51.93 -0.42 0.83 16 30 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.39 7.02 8.53 -40.82 -0.35 6.68 16 33 H 0.06 1.31 5.06 -51.93 -0.26 1.05 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.27 7.96 8.73 -40.82 -0.36 7.61 16 LS Contribution 306.43 15.07 4.62 4.62 Total: -1.00 -32.36 306.43 -6.03 -38.39 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.24 Total: 4.78 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -1.59 Total: -13.31 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.48 Total: -40.59 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: 0.15 Total: -14.52 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -4.45 Total: 20.65 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.36 -6.03 -38.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000471963899.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.361 kcal (2) G-P(sol) polarization free energy of solvation -32.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds