Wall clock time and date at job start Mon Mar 30 2020 04:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50693 * 119.99990 * 2 1 4 4 N 1.46503 * 109.46893 * 124.99908 * 3 2 1 5 5 C 1.46495 * 120.00201 * 270.00090 * 4 3 2 6 6 C 1.50699 * 109.47200 * 270.00077 * 5 4 3 7 7 H 1.08003 * 119.99892 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99944 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99999 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99778 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47049 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47216 * 119.99663 * 10 8 6 13 13 H 1.48501 * 109.46981 * 239.99766 * 10 8 6 14 14 C 1.34783 * 119.99774 * 90.00460 * 4 3 2 15 15 O 1.21282 * 119.99819 * 180.02562 * 14 4 3 16 16 C 1.50696 * 119.99893 * 359.97438 * 14 4 3 17 17 H 1.09004 * 115.48458 * 34.68386 * 16 14 4 18 18 C 1.52999 * 117.43131 * 180.02562 * 16 14 4 19 19 H 1.08999 * 120.24845 * 355.53866 * 18 16 14 20 20 C 1.54483 * 118.06619 * 198.08976 * 18 16 14 21 21 O 1.44428 * 104.89902 * 273.11840 * 20 18 16 22 22 C 1.44136 * 105.42937 * 40.03940 * 21 20 18 23 23 C 1.53001 * 117.43703 * 249.35108 * 16 14 4 24 24 H 1.08998 * 119.80152 * 4.63672 * 23 16 14 25 25 H 1.08000 * 119.99960 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00220 * 179.97438 * 1 2 3 27 27 H 1.07998 * 119.99825 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47629 * 5.00688 * 3 2 1 29 29 H 1.08998 * 109.47724 * 244.99677 * 3 2 1 30 30 H 1.09001 * 109.47226 * 30.00203 * 5 4 3 31 31 H 1.09002 * 109.47151 * 150.00313 * 5 4 3 32 32 H 0.96999 * 119.99552 * 180.02562 * 9 8 6 33 33 H 1.09002 * 110.37322 * 32.00353 * 20 18 16 34 34 H 1.08999 * 110.37312 * 154.23030 * 20 18 16 35 35 H 1.09000 * 110.90083 * 201.00053 * 22 21 20 36 36 H 1.08993 * 109.53536 * 78.87677 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5589 1.8648 2.4249 6 6 2.8443 3.3434 2.4805 7 1 3.3041 3.8368 1.6369 8 6 2.5194 4.0663 3.6088 9 7 1.9600 3.4655 4.6362 10 14 2.8725 5.8994 3.6774 11 1 3.5004 6.3306 2.4026 12 1 1.6021 6.6410 3.8796 13 1 3.7964 6.1836 4.8047 14 6 4.2498 0.8661 0.9824 15 8 5.0197 0.8878 1.9192 16 6 4.6969 0.3174 -0.3480 17 1 4.2753 0.8100 -1.2242 18 6 6.1345 -0.1961 -0.4514 19 1 6.8167 -0.0921 0.3923 20 6 6.7482 -0.3599 -1.8596 21 8 6.3591 -1.6850 -2.2824 22 6 4.9975 -1.8450 -1.8378 23 6 4.9509 -1.1886 -0.4401 24 1 4.7339 -1.8279 0.4157 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9352 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3587 2.1316 0.0897 29 1 2.6214 1.4026 -0.9313 30 1 1.4888 1.6964 2.5460 31 1 3.0990 1.3601 3.2260 32 1 1.7311 3.9741 5.4298 33 1 6.3433 0.3896 -2.5396 34 1 7.8343 -0.2805 -1.8117 35 1 4.7317 -2.9000 -1.7707 36 1 4.3269 -1.3268 -2.5232 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597684973.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:46 Heat of formation + Delta-G solvation = -22.650257 kcal Electronic energy + Delta-G solvation = -18568.603562 eV Core-core repulsion = 15633.766790 eV Total energy + Delta-G solvation = -2934.836771 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.59410 -38.61393 -35.76099 -34.49425 -33.17455 -32.07668 -28.81176 -28.07392 -26.05655 -25.26279 -23.21954 -21.31235 -20.69008 -19.93796 -18.48861 -17.06271 -16.54700 -16.00252 -15.66858 -15.25452 -15.13410 -14.66239 -14.35141 -14.03734 -13.12528 -13.09221 -12.70475 -12.60020 -12.19052 -11.73710 -11.66988 -11.58832 -11.31499 -11.07909 -10.89656 -10.66204 -10.33682 -10.24822 -10.15314 -9.71647 -9.64582 -9.19751 -8.99854 -8.46241 -7.74560 -6.06995 -4.11922 2.43249 2.89784 3.28048 3.35776 3.39661 3.70045 3.82836 3.93580 4.41091 4.58968 4.63581 4.85947 4.90564 5.06972 5.13913 5.26049 5.26630 5.28654 5.41072 5.55386 5.60403 5.65697 5.69068 5.97313 6.02076 6.15706 6.19673 6.58994 6.78400 6.89304 7.04696 7.40359 7.49993 7.89295 8.19815 8.34075 8.85834 9.02298 9.53309 11.01207 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.024068 B = 0.006045 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.097289 B = 4630.953676 C = 5364.472845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.165 4.165 3 C 0.136 3.864 4 N -0.586 5.586 5 C 0.247 3.753 6 C -0.527 4.527 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.534 3.466 15 O -0.536 6.536 16 C -0.139 4.139 17 H 0.119 0.881 18 C -0.165 4.165 19 H 0.134 0.866 20 C 0.074 3.926 21 O -0.375 6.375 22 C 0.076 3.924 23 C -0.173 4.173 24 H 0.125 0.875 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.349 -8.304 -13.827 16.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.185 4.185 3 C 0.012 3.988 4 N -0.317 5.317 5 C 0.128 3.872 6 C -0.566 4.566 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.320 3.680 15 O -0.414 6.414 16 C -0.160 4.160 17 H 0.137 0.863 18 C -0.184 4.184 19 H 0.151 0.849 20 C -0.002 4.002 21 O -0.294 6.294 22 C 0.000 4.000 23 C -0.192 4.192 24 H 0.142 0.858 25 H 0.117 0.883 26 H 0.112 0.888 27 H 0.123 0.877 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.815 -8.394 -13.237 15.779 hybrid contribution -0.157 1.205 0.349 1.264 sum 1.658 -7.189 -12.888 14.850 Atomic orbital electron populations 1.23818 0.95846 1.01743 1.00754 1.23414 0.96308 0.99037 0.99715 1.20609 0.93028 0.95427 0.89701 1.48149 1.10122 1.59695 1.13686 1.19312 0.95480 0.93844 0.78575 1.21467 1.40545 0.93259 1.01318 0.92368 1.24940 0.95018 0.98825 0.95304 1.69944 1.42048 1.36123 1.05184 0.86439 0.77929 0.84878 0.78161 1.19786 1.20931 1.20846 1.19239 0.82477 0.78561 0.87727 1.90678 1.52725 1.56582 1.41405 1.22534 0.98522 0.95854 0.99120 0.86282 1.24155 0.90528 1.03739 0.99952 0.84863 1.22943 1.00664 0.84685 0.91915 1.89094 1.28388 1.33132 1.78801 1.22861 0.84180 1.01329 0.91668 1.24121 1.04369 0.90706 1.00025 0.85754 0.88325 0.88781 0.87689 0.89455 0.90776 0.94810 0.93889 0.92738 0.91851 0.88256 0.88292 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 14.32 29.01 0.42 -1.92 16 2 C -0.17 -2.31 9.85 -36.03 -0.35 -2.66 16 3 C 0.14 2.18 5.67 -5.20 -0.03 2.15 16 4 N -0.59 -12.30 2.44 -176.44 -0.43 -12.73 16 5 C 0.25 6.44 5.16 -5.20 -0.03 6.41 16 6 C -0.53 -14.89 9.39 -34.44 -0.32 -15.22 16 7 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 10 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 14 C 0.53 11.06 7.45 -10.98 -0.08 10.98 16 15 O -0.54 -13.52 15.94 5.56 0.09 -13.43 16 16 C -0.14 -2.09 4.85 -91.77 -0.44 -2.53 16 17 H 0.12 1.53 6.45 -51.93 -0.33 1.19 16 18 C -0.16 -2.30 6.64 -89.07 -0.59 -2.89 16 19 H 0.13 2.06 7.84 -51.93 -0.41 1.65 16 20 C 0.07 0.84 7.44 37.94 0.28 1.13 16 21 O -0.38 -4.69 11.64 -35.23 -0.41 -5.10 16 22 C 0.08 0.81 7.44 37.94 0.28 1.10 16 23 C -0.17 -2.25 6.90 -89.07 -0.61 -2.87 16 24 H 0.12 1.68 8.14 -51.93 -0.42 1.26 16 25 H 0.10 1.24 7.84 -52.49 -0.41 0.83 16 26 H 0.09 1.03 8.06 -52.49 -0.42 0.60 16 27 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 28 H 0.09 1.45 7.72 -51.93 -0.40 1.05 16 29 H 0.07 0.99 6.00 -51.93 -0.31 0.68 16 30 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 31 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 309.01 15.07 4.66 4.66 Total: -1.00 -32.85 309.01 -7.14 -39.99 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -5.17 Total: 0.34 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -1.58 Total: -4.68 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.31 Total: -38.54 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.32 Total: -18.54 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.85 -7.14 -39.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597684973.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.337 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds