Wall clock time and date at job start Mon Mar 30 2020 04:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46906 * 194.68190 * 3 2 1 5 5 C 1.37096 * 120.00143 * 263.72544 * 4 3 2 6 6 H 1.08001 * 119.99511 * 202.02778 * 5 4 3 7 7 C 1.38942 * 120.00132 * 22.03179 * 5 4 3 8 8 N 1.31413 * 119.99961 * 6.42154 * 7 5 4 9 9 Si 1.86798 * 120.00339 * 186.42826 * 7 5 4 10 10 H 1.48508 * 109.47163 * 59.99228 * 9 7 5 11 11 H 1.48496 * 109.47383 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46852 * 299.99924 * 9 7 5 13 13 C 1.34783 * 119.99832 * 83.72414 * 4 3 2 14 14 O 1.21284 * 120.00137 * 185.64183 * 13 4 3 15 15 C 1.50709 * 119.99843 * 5.64442 * 13 4 3 16 16 H 1.08993 * 110.90779 * 331.45814 * 15 13 4 17 17 C 1.55308 * 110.84388 * 207.87392 * 15 13 4 18 18 C 1.54943 * 100.94257 * 275.94397 * 17 15 13 19 19 H 1.08997 * 110.31163 * 82.46940 * 18 17 15 20 20 C 1.53001 * 110.39295 * 204.60086 * 18 17 15 21 21 O 1.43646 * 105.13594 * 323.55925 * 18 17 15 22 22 C 1.43230 * 109.97359 * 24.42696 * 21 18 17 23 23 H 1.09000 * 109.83646 * 238.68481 * 22 21 18 24 24 C 1.53004 * 109.83365 * 117.80316 * 22 21 18 25 25 H 4.40639 * 5.51351 * 180.02562 * 4 1 2 26 26 H 1.08999 * 109.47146 * 74.68244 * 3 2 1 27 27 H 1.08996 * 109.47086 * 314.68433 * 3 2 1 28 28 H 0.97005 * 119.99775 * 180.02562 * 8 7 5 29 29 H 1.08998 * 111.11926 * 158.02579 * 17 15 13 30 30 H 1.09002 * 111.16246 * 33.88017 * 17 15 13 31 31 H 1.09001 * 109.47064 * 177.21275 * 20 18 17 32 32 H 1.08998 * 109.47088 * 297.21534 * 20 18 17 33 33 H 1.09001 * 109.47308 * 57.21531 * 20 18 17 34 34 H 1.08998 * 109.46657 * 57.46979 * 24 22 21 35 35 H 1.08992 * 109.47723 * 177.46917 * 24 22 21 36 36 H 1.08994 * 109.46906 * 297.47743 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3370 0.3501 5 6 3.4842 2.2196 -0.6387 6 1 4.1563 3.0362 -0.4201 7 6 2.9745 2.0637 -1.9218 8 7 2.0609 1.1494 -2.1593 9 14 3.5881 3.1533 -3.3094 10 1 5.0511 2.9626 -3.4788 11 1 2.8926 2.7886 -4.5698 12 1 3.3088 4.5749 -2.9829 13 6 3.2379 1.6987 1.6443 14 8 3.5431 2.8364 1.9333 15 6 2.9751 0.6894 2.7322 16 1 2.2674 -0.0686 2.3969 17 6 2.4667 1.3879 4.0229 18 6 3.8068 1.8080 4.6773 19 1 4.1646 2.7408 4.2416 20 6 3.6367 1.9603 6.1902 21 8 4.7193 0.7383 4.3834 22 6 4.2920 0.0396 3.2084 23 1 4.1232 -1.0113 3.4438 24 6 5.3560 0.1620 2.1158 25 1 -1.0502 -0.0005 0.0001 26 1 3.0095 -0.2707 -0.9911 27 1 3.0097 -0.7218 0.7306 28 1 1.7054 1.0403 -3.0552 29 1 1.9210 0.6902 4.6581 30 1 1.8559 2.2587 3.7846 31 1 4.5979 2.2073 6.6409 32 1 2.9227 2.7576 6.3971 33 1 3.2681 1.0246 6.6105 34 1 6.3039 -0.2281 2.4865 35 1 5.0456 -0.4087 1.2406 36 1 5.4767 1.2101 1.8421 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686484509.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:52 Heat of formation + Delta-G solvation = -15.546223 kcal Electronic energy + Delta-G solvation = -19495.861725 eV Core-core repulsion = 16561.333008 eV Total energy + Delta-G solvation = -2934.528717 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.09771 -37.73626 -35.14572 -32.62834 -32.19472 -31.57648 -31.08569 -28.46364 -26.54234 -25.09519 -23.64042 -21.85886 -20.46473 -18.57720 -17.84379 -17.15392 -16.51759 -15.71133 -15.31933 -14.41265 -14.29528 -14.15962 -13.81412 -13.25818 -12.77701 -12.63013 -12.52152 -12.26960 -11.89885 -11.64654 -11.54342 -11.39690 -11.20669 -11.02910 -10.76528 -10.59171 -10.47442 -10.36373 -10.25177 -9.45280 -9.30782 -9.07843 -8.83584 -8.38576 -7.86071 -6.30715 -3.93946 3.15778 3.22899 3.25732 3.60563 3.83759 4.03266 4.15423 4.17836 4.77402 4.92282 5.06180 5.17861 5.29081 5.45670 5.54624 5.61607 5.63528 5.74106 5.82670 5.93349 6.01404 6.10317 6.17291 6.28307 6.30655 6.34263 6.46065 6.63044 6.77224 6.84738 7.06246 7.46853 7.51531 8.03793 8.41455 8.78843 9.11090 9.32472 9.87780 10.67983 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.027355 B = 0.007555 C = 0.006863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.339720 B = 3705.329332 C = 4079.164987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.108 4.108 3 C 0.229 3.771 4 N -0.440 5.440 5 C -0.306 4.306 6 H 0.100 0.900 7 C 0.030 3.970 8 N -0.876 5.876 9 Si 0.928 3.072 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.471 3.529 14 O -0.578 6.578 15 C -0.141 4.141 16 H 0.097 0.903 17 C -0.127 4.127 18 C 0.078 3.922 19 H 0.085 0.915 20 C -0.148 4.148 21 O -0.379 6.379 22 C 0.097 3.903 23 H 0.078 0.922 24 C -0.168 4.168 25 H 0.199 0.801 26 H 0.122 0.878 27 H 0.056 0.944 28 H 0.269 0.731 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.450 -4.823 7.669 9.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.109 4.109 3 C 0.106 3.894 4 N -0.158 5.158 5 C -0.433 4.433 6 H 0.118 0.882 7 C -0.173 4.173 8 N -0.515 5.515 9 Si 0.755 3.245 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.259 3.741 14 O -0.462 6.462 15 C -0.163 4.163 16 H 0.115 0.885 17 C -0.165 4.165 18 C 0.021 3.979 19 H 0.103 0.897 20 C -0.205 4.205 21 O -0.300 6.300 22 C 0.039 3.961 23 H 0.096 0.904 24 C -0.225 4.225 25 H 0.216 0.784 26 H 0.139 0.861 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.715 -4.358 7.714 8.889 hybrid contribution -0.470 0.446 -1.137 1.309 sum 0.246 -3.912 6.577 7.657 Atomic orbital electron populations 1.24287 0.95408 1.02797 1.06341 1.23273 0.94436 0.97744 0.95484 1.18412 0.84089 0.84730 1.02177 1.43618 1.56145 1.11877 1.04182 1.19621 1.26041 1.09812 0.87851 0.88209 1.25350 0.95294 0.97586 0.99101 1.69933 1.26363 1.33102 1.22150 0.85967 0.78738 0.80221 0.79588 1.19889 1.20974 1.19935 1.19589 0.83275 0.88115 0.83125 1.90507 1.52939 1.20663 1.82106 1.22916 0.98219 0.98886 0.96304 0.88517 1.23076 0.97895 1.00847 0.94670 1.23003 0.88380 0.91796 0.94735 0.89675 1.21886 1.01903 1.01810 0.94905 1.88330 1.50740 1.46363 1.44522 1.22515 0.92571 0.95249 0.85795 0.90448 1.22267 0.98519 1.04041 0.97706 0.78439 0.86083 0.92608 0.92044 0.90790 0.89665 0.92257 0.91525 0.92458 0.92440 0.91196 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.55 19.25 29.55 0.57 -4.98 16 2 C -0.11 -2.39 10.92 -37.12 -0.41 -2.80 16 3 C 0.23 4.98 4.35 -6.83 -0.03 4.95 16 4 N -0.44 -10.75 2.43 -117.93 -0.29 -11.04 16 5 C -0.31 -8.20 9.29 -14.94 -0.14 -8.34 16 6 H 0.10 2.80 7.44 -52.49 -0.39 2.41 16 7 C 0.03 0.76 5.19 -17.47 -0.09 0.67 16 8 N -0.88 -22.56 8.90 55.50 0.49 -22.06 16 9 Si 0.93 20.48 29.56 -169.99 -5.02 15.46 16 10 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 13 C 0.47 11.06 4.34 -10.98 -0.05 11.01 16 14 O -0.58 -15.43 14.58 5.55 0.08 -15.35 16 15 C -0.14 -2.65 2.51 -89.82 -0.23 -2.88 16 16 H 0.10 1.71 6.03 -51.93 -0.31 1.40 16 17 C -0.13 -2.15 5.79 -24.48 -0.14 -2.29 16 18 C 0.08 1.33 3.71 -25.71 -0.10 1.23 16 19 H 0.09 1.68 7.09 -51.93 -0.37 1.31 16 20 C -0.15 -1.95 9.63 37.16 0.36 -1.59 16 21 O -0.38 -6.86 10.70 -35.23 -0.38 -7.24 16 22 C 0.10 1.67 4.08 -26.01 -0.11 1.56 16 23 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 24 C -0.17 -2.97 8.62 37.16 0.32 -2.65 16 25 H 0.20 3.31 7.80 -54.08 -0.42 2.89 16 26 H 0.12 2.80 6.26 -51.93 -0.33 2.48 16 27 H 0.06 1.02 5.73 -51.93 -0.30 0.73 16 28 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 29 H 0.07 1.05 8.06 -51.93 -0.42 0.63 16 30 H 0.08 1.54 7.89 -51.93 -0.41 1.13 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.19 6.74 -51.93 -0.35 0.84 16 36 H 0.07 1.52 6.66 -51.93 -0.35 1.17 16 LS Contribution 293.89 15.07 4.43 4.43 Total: -1.00 -29.90 293.89 -5.61 -35.50 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -4.89 Total: 6.41 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -0.03 Total: -6.11 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 0.21 Total: -33.10 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.30 Total: -22.59 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.90 -5.61 -35.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686484509.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.958 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds