Wall clock time and date at job start Mon Mar 30 2020 04:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46906 * 194.68190 * 3 2 1 5 5 C 1.37096 * 120.00143 * 263.72544 * 4 3 2 6 6 H 1.08001 * 119.99511 * 202.02778 * 5 4 3 7 7 C 1.38942 * 120.00132 * 22.03179 * 5 4 3 8 8 N 1.31413 * 119.99961 * 6.42154 * 7 5 4 9 9 Si 1.86798 * 120.00339 * 186.42826 * 7 5 4 10 10 H 1.48508 * 109.47163 * 59.99228 * 9 7 5 11 11 H 1.48496 * 109.47383 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46852 * 299.99924 * 9 7 5 13 13 C 1.34783 * 119.99832 * 83.72414 * 4 3 2 14 14 O 1.21284 * 120.00137 * 185.64183 * 13 4 3 15 15 C 1.50709 * 119.99843 * 5.64442 * 13 4 3 16 16 H 1.08993 * 110.90779 * 331.45814 * 15 13 4 17 17 C 1.55308 * 110.84388 * 207.87392 * 15 13 4 18 18 C 1.54943 * 100.94257 * 275.94397 * 17 15 13 19 19 H 1.08997 * 110.31163 * 82.46940 * 18 17 15 20 20 C 1.53001 * 110.39295 * 204.60086 * 18 17 15 21 21 O 1.43646 * 105.13594 * 323.55925 * 18 17 15 22 22 C 1.43230 * 109.97359 * 24.42696 * 21 18 17 23 23 H 1.09000 * 109.83646 * 238.68481 * 22 21 18 24 24 C 1.53004 * 109.83365 * 117.80316 * 22 21 18 25 25 H 4.40639 * 5.51351 * 180.02562 * 4 1 2 26 26 H 1.08999 * 109.47146 * 74.68244 * 3 2 1 27 27 H 1.08996 * 109.47086 * 314.68433 * 3 2 1 28 28 H 0.97005 * 119.99775 * 180.02562 * 8 7 5 29 29 H 1.08998 * 111.11926 * 158.02579 * 17 15 13 30 30 H 1.09002 * 111.16246 * 33.88017 * 17 15 13 31 31 H 1.09001 * 109.47064 * 177.21275 * 20 18 17 32 32 H 1.08998 * 109.47088 * 297.21534 * 20 18 17 33 33 H 1.09001 * 109.47308 * 57.21531 * 20 18 17 34 34 H 1.08998 * 109.46657 * 57.46979 * 24 22 21 35 35 H 1.08992 * 109.47723 * 177.46917 * 24 22 21 36 36 H 1.08994 * 109.46906 * 297.47743 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3370 0.3501 5 6 3.4842 2.2196 -0.6387 6 1 4.1563 3.0362 -0.4201 7 6 2.9745 2.0637 -1.9218 8 7 2.0609 1.1494 -2.1593 9 14 3.5881 3.1533 -3.3094 10 1 5.0511 2.9626 -3.4788 11 1 2.8926 2.7886 -4.5698 12 1 3.3088 4.5749 -2.9829 13 6 3.2379 1.6987 1.6443 14 8 3.5431 2.8364 1.9333 15 6 2.9751 0.6894 2.7322 16 1 2.2674 -0.0686 2.3969 17 6 2.4667 1.3879 4.0229 18 6 3.8068 1.8080 4.6773 19 1 4.1646 2.7408 4.2416 20 6 3.6367 1.9603 6.1902 21 8 4.7193 0.7383 4.3834 22 6 4.2920 0.0396 3.2084 23 1 4.1232 -1.0113 3.4438 24 6 5.3560 0.1620 2.1158 25 1 -1.0502 -0.0005 0.0001 26 1 3.0095 -0.2707 -0.9911 27 1 3.0097 -0.7218 0.7306 28 1 1.7054 1.0403 -3.0552 29 1 1.9210 0.6902 4.6581 30 1 1.8559 2.2587 3.7846 31 1 4.5979 2.2073 6.6409 32 1 2.9227 2.7576 6.3971 33 1 3.2681 1.0246 6.6105 34 1 6.3039 -0.2281 2.4865 35 1 5.0456 -0.4087 1.2406 36 1 5.4767 1.2101 1.8421 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686484509.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:51 Heat of formation + Delta-G solvation = -33.838263 kcal Electronic energy + Delta-G solvation = -19496.654928 eV Core-core repulsion = 16561.333008 eV Total energy + Delta-G solvation = -2935.321919 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.66236 -39.38337 -37.02661 -34.28780 -33.63132 -33.13032 -32.86831 -29.76688 -28.33371 -26.86466 -25.08295 -23.42719 -21.82597 -20.23002 -19.64846 -18.76353 -18.25194 -17.23808 -16.97431 -16.12200 -15.93093 -15.84787 -15.31127 -14.73902 -14.39232 -14.10682 -14.04181 -13.76044 -13.40532 -13.32809 -12.89697 -12.88597 -12.76973 -12.66436 -12.47252 -12.24825 -12.17132 -11.77057 -11.65130 -11.28333 -11.04440 -10.58916 -10.44184 -10.24197 -9.78226 -8.26623 -5.97250 1.37026 1.40177 1.49092 1.86632 2.11311 2.32246 2.39498 2.81558 3.07902 3.12082 3.53736 3.78004 3.86602 3.89712 4.11883 4.28149 4.37121 4.40965 4.46609 4.62465 4.65438 4.74021 4.82441 4.91056 4.95913 5.05269 5.09748 5.24435 5.29822 5.35251 5.43895 5.46359 6.08187 6.11535 6.47560 7.13546 7.16322 7.43335 8.00002 8.68727 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.027355 B = 0.007555 C = 0.006863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.339720 B = 3705.329332 C = 4079.164987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.151 4.151 3 C 0.233 3.767 4 N -0.450 5.450 5 C -0.340 4.340 6 H 0.071 0.929 7 C 0.001 3.999 8 N -0.882 5.882 9 Si 0.984 3.016 10 H -0.267 1.267 11 H -0.272 1.272 12 H -0.284 1.284 13 C 0.465 3.535 14 O -0.623 6.623 15 C -0.139 4.139 16 H 0.113 0.887 17 C -0.122 4.122 18 C 0.074 3.926 19 H 0.044 0.956 20 C -0.139 4.139 21 O -0.388 6.388 22 C 0.097 3.903 23 H 0.119 0.881 24 C -0.164 4.164 25 H 0.233 0.767 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.271 0.729 29 H 0.113 0.887 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.533 -6.556 8.515 10.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.152 4.152 3 C 0.111 3.889 4 N -0.168 5.168 5 C -0.467 4.467 6 H 0.089 0.911 7 C -0.201 4.201 8 N -0.520 5.520 9 Si 0.809 3.191 10 H -0.192 1.192 11 H -0.196 1.196 12 H -0.210 1.210 13 C 0.255 3.745 14 O -0.510 6.510 15 C -0.161 4.161 16 H 0.131 0.869 17 C -0.160 4.160 18 C 0.017 3.983 19 H 0.062 0.938 20 C -0.196 4.196 21 O -0.308 6.308 22 C 0.039 3.961 23 H 0.137 0.863 24 C -0.221 4.221 25 H 0.249 0.751 26 H 0.120 0.880 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.131 0.869 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -0.277 -6.126 8.557 10.528 hybrid contribution -0.182 1.005 -1.413 1.743 sum -0.459 -5.122 7.144 8.803 Atomic orbital electron populations 1.25162 0.96388 1.00982 1.04578 1.23566 0.95112 0.99406 0.97129 1.18407 0.84392 0.83939 1.02177 1.43775 1.56194 1.12591 1.04208 1.19520 1.27169 1.10549 0.89503 0.91097 1.25963 0.95232 0.98590 1.00349 1.70049 1.26194 1.33262 1.22506 0.85130 0.78688 0.77975 0.77325 1.19216 1.19624 1.20956 1.20436 0.81728 0.88551 0.83809 1.90472 1.54628 1.22993 1.82893 1.22918 0.99785 0.98073 0.95302 0.86889 1.23129 0.97805 1.00856 0.94220 1.23000 0.88064 0.89980 0.97248 0.93762 1.21840 1.02723 1.03394 0.91624 1.88320 1.51522 1.46476 1.44524 1.22699 0.91070 0.96975 0.85326 0.86328 1.22222 1.00158 1.01241 0.98484 0.75088 0.87971 0.89221 0.91894 0.86881 0.91547 0.91900 0.90114 0.90487 0.90447 0.90705 0.95377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.83 19.25 74.32 1.43 -8.40 16 2 C -0.15 -6.51 10.92 31.13 0.34 -6.17 16 3 C 0.23 10.06 4.35 84.58 0.37 10.43 16 4 N -0.45 -22.51 2.43 -645.41 -1.57 -24.08 16 5 C -0.34 -18.94 9.29 84.04 0.78 -18.16 16 6 H 0.07 4.26 7.44 -2.91 -0.02 4.24 16 7 C 0.00 0.04 5.19 84.92 0.44 0.48 16 8 N -0.88 -45.31 8.90 21.66 0.19 -45.12 16 9 Si 0.98 42.50 29.56 68.60 2.03 44.53 16 10 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 11 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 C 0.46 22.39 4.34 87.66 0.38 22.77 16 14 O -0.62 -35.08 14.58 -3.04 -0.04 -35.12 16 15 C -0.14 -5.05 2.51 -10.28 -0.03 -5.08 16 16 H 0.11 3.72 6.03 -2.39 -0.01 3.70 16 17 C -0.12 -3.95 5.79 32.05 0.19 -3.76 16 18 C 0.07 2.48 3.71 31.26 0.12 2.59 16 19 H 0.04 1.82 7.09 -2.39 -0.02 1.81 16 20 C -0.14 -3.33 9.63 71.98 0.69 -2.64 16 21 O -0.39 -13.42 10.70 -148.98 -1.59 -15.02 16 22 C 0.10 3.15 4.08 31.06 0.13 3.27 16 23 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 24 C -0.16 -5.73 8.62 71.98 0.62 -5.11 16 25 H 0.23 6.94 7.80 -4.41 -0.03 6.91 16 26 H 0.10 4.77 6.26 -2.39 -0.01 4.75 16 27 H 0.09 3.15 5.73 -2.39 -0.01 3.14 16 28 H 0.27 13.31 8.31 -92.70 -0.77 12.54 16 29 H 0.11 2.77 8.06 -2.39 -0.02 2.75 16 30 H 0.07 2.39 7.89 -2.39 -0.02 2.37 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.07 2.49 6.74 -2.39 -0.02 2.48 16 36 H 0.03 1.21 6.66 -2.39 -0.02 1.20 16 Total: -1.00 -67.10 293.89 5.54 -61.56 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 1.07 Total: 23.01 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: 5.46 Total: -9.76 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: -1.38 Total: -69.20 kcal Atomic # 8 Polarization: -48.50 SS G_CDS: -1.64 Total: -50.14 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -67.10 5.54 -61.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686484509.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.721 kcal (2) G-P(sol) polarization free energy of solvation -67.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds