Wall clock time and date at job start Mon Mar 30 2020 05:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42901 * 109.46938 * 2 1 4 4 C 1.35996 * 116.99936 * 179.97438 * 3 2 1 5 5 C 1.38565 * 120.07119 * 0.02562 * 4 3 2 6 6 C 1.38243 * 119.99788 * 179.97438 * 5 4 3 7 7 C 1.50709 * 119.92364 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.46807 * 90.00238 * 7 6 5 9 9 N 1.46896 * 109.47044 * 330.00142 * 7 6 5 10 10 C 1.50700 * 109.46582 * 209.99890 * 7 6 5 11 11 H 1.07995 * 120.00464 * 0.02562 * 10 7 6 12 12 C 1.37886 * 119.99465 * 179.97438 * 10 7 6 13 13 N 1.31512 * 119.99720 * 180.02562 * 12 10 7 14 14 Si 1.86796 * 120.00171 * 0.02562 * 12 10 7 15 15 H 1.48503 * 109.47397 * 89.99599 * 14 12 10 16 16 H 1.48492 * 109.47172 * 209.99721 * 14 12 10 17 17 H 1.48496 * 109.47173 * 329.99692 * 14 12 10 18 18 C 1.38249 * 120.14768 * 0.02562 * 6 5 4 19 19 C 1.38236 * 120.14650 * 0.02562 * 18 6 5 20 20 C 1.38566 * 120.00196 * 359.97438 * 19 18 6 21 21 O 1.35993 * 120.07684 * 179.97438 * 20 19 18 22 22 H 1.09006 * 109.46849 * 300.00043 * 1 2 3 23 23 H 1.08997 * 109.46650 * 59.99963 * 1 2 3 24 24 H 1.09000 * 109.46987 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47004 * 239.99683 * 2 1 3 26 26 H 1.08996 * 109.47094 * 119.99740 * 2 1 3 27 27 H 1.08000 * 120.00430 * 359.70530 * 5 4 3 28 28 H 1.09006 * 109.47267 * 60.00047 * 8 7 6 29 29 H 1.09004 * 109.46796 * 179.97438 * 8 7 6 30 30 H 1.08992 * 109.47501 * 299.99421 * 8 7 6 31 31 H 1.00895 * 110.99961 * 300.00003 * 9 7 6 32 32 H 1.00905 * 111.00068 * 63.95806 * 9 7 6 33 33 H 0.96999 * 119.99890 * 180.02562 * 13 12 10 34 34 H 1.07996 * 119.92690 * 179.97438 * 18 6 5 35 35 H 1.08003 * 119.99984 * 179.97438 * 19 18 6 36 36 H 0.96704 * 113.99937 * 270.02587 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.2001 0.4277 0.0005 6 6 5.5703 0.6106 0.0005 7 6 6.4884 -0.5846 -0.0001 8 6 6.7989 -0.9883 -1.4427 9 7 5.8354 -1.7039 0.6919 10 6 7.7702 -0.2337 0.7104 11 1 7.9063 0.7556 1.1217 12 6 8.7688 -1.1761 0.8364 13 7 9.8872 -0.8700 1.4569 14 14 8.5331 -2.8874 0.1258 15 1 9.0262 -2.9142 -1.2748 16 1 9.2951 -3.8698 0.9376 17 1 7.0905 -3.2388 0.1493 18 6 6.1004 1.8875 0.0011 19 6 5.2625 2.9870 0.0022 20 6 3.8881 2.8107 0.0022 21 8 3.0624 3.8913 0.0038 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.7886 -0.5708 0.0049 28 1 7.2834 -0.1577 -1.9562 29 1 7.4633 -1.8525 -1.4432 30 1 5.8719 -1.2421 -1.9567 31 1 5.6199 -1.4619 1.6474 32 1 5.0068 -2.0003 0.1982 33 1 10.5899 -1.5329 1.5452 34 1 7.1714 2.0262 0.0015 35 1 5.6791 3.9834 0.0031 36 1 2.8241 4.2029 0.8877 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687769775.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:31 Heat of formation + Delta-G solvation = -66.606695 kcal Electronic energy + Delta-G solvation = -18870.296124 eV Core-core repulsion = 15933.553259 eV Total energy + Delta-G solvation = -2936.742865 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.47924 -39.21037 -38.54408 -36.15669 -33.96687 -32.70716 -31.03552 -30.26995 -29.21551 -27.11779 -25.04874 -23.81454 -22.57959 -21.23989 -19.59723 -18.75852 -18.09094 -17.12163 -17.10080 -16.82632 -16.31744 -16.03895 -15.58414 -15.03554 -14.81432 -14.60822 -14.06439 -13.99133 -13.74750 -13.39349 -13.16397 -13.07199 -12.85794 -12.47769 -12.33068 -12.22837 -11.90623 -11.58873 -11.53659 -11.39044 -11.00057 -10.65227 -9.70949 -9.02661 -8.82424 -8.19299 -6.30797 0.29024 0.46620 1.49486 1.61260 1.93344 2.22538 2.61011 2.70319 3.20415 3.29940 3.82031 3.98233 4.05206 4.05972 4.17696 4.33876 4.42212 4.48388 4.55935 4.68469 4.84064 4.89135 4.92055 4.94967 4.98934 5.16656 5.27362 5.35023 5.39951 5.60660 5.78394 5.86666 6.20904 6.33510 6.56692 6.82006 6.90617 7.05394 7.47292 8.93240 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.026648 B = 0.007000 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.498588 B = 3998.923466 C = 4771.490728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.040 3.960 3 O -0.321 6.321 4 C 0.098 3.902 5 C -0.200 4.200 6 C -0.053 4.053 7 C 0.246 3.754 8 C -0.134 4.134 9 N -0.832 5.832 10 C -0.508 4.508 11 H 0.043 0.957 12 C 0.028 3.972 13 N -0.952 5.952 14 Si 0.928 3.072 15 H -0.304 1.304 16 H -0.334 1.334 17 H -0.152 1.152 18 C -0.138 4.138 19 C -0.109 4.109 20 C 0.049 3.951 21 O -0.496 6.496 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.101 0.899 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.146 0.854 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.338 0.662 32 H 0.329 0.671 33 H 0.259 0.741 34 H 0.116 0.884 35 H 0.146 0.854 36 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.537 1.637 -3.107 18.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 O -0.236 6.236 4 C 0.052 3.948 5 C -0.219 4.219 6 C -0.056 4.056 7 C 0.154 3.846 8 C -0.191 4.191 9 N -0.363 5.363 10 C -0.546 4.546 11 H 0.061 0.939 12 C -0.170 4.170 13 N -0.591 5.591 14 Si 0.758 3.242 15 H -0.234 1.234 16 H -0.265 1.265 17 H -0.073 1.073 18 C -0.157 4.157 19 C -0.127 4.127 20 C 0.004 3.996 21 O -0.307 6.307 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.119 0.881 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.163 0.837 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.151 0.849 32 H 0.143 0.857 33 H 0.068 0.932 34 H 0.134 0.866 35 H 0.164 0.836 36 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -17.890 1.264 -3.794 18.332 hybrid contribution 0.310 0.082 0.613 0.692 sum -17.581 1.346 -3.180 17.917 Atomic orbital electron populations 1.21780 0.90978 1.04201 1.03207 1.23095 0.97231 0.81045 1.02051 1.86097 1.17799 1.30925 1.88732 1.19380 0.83134 0.93577 0.98681 1.21066 0.92849 0.98515 1.09508 1.20839 0.93677 0.96769 0.94292 1.17641 0.90631 0.84340 0.91995 1.22019 1.00499 1.00352 0.96250 1.59641 1.31126 1.38978 1.06533 1.21102 0.98519 0.98500 1.36442 0.93883 1.25817 0.93917 1.03138 0.94159 1.70089 1.07621 1.36567 1.44866 0.86553 0.83998 0.79006 0.74652 1.23372 1.26526 1.07304 1.21083 1.00167 0.92168 1.02309 1.21395 0.91502 1.00044 0.99804 1.17745 0.88769 0.84289 1.08791 1.84818 1.66491 1.44687 1.34690 0.91670 0.91886 0.88082 0.91572 0.91407 0.83668 0.93245 0.93901 0.91996 0.84869 0.85680 0.93224 0.86568 0.83613 0.74403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 10.28 71.98 0.74 -1.36 16 2 C 0.04 0.81 5.46 71.98 0.39 1.20 16 3 O -0.32 -8.93 9.92 -79.64 -0.79 -9.72 16 4 C 0.10 3.08 6.70 22.57 0.15 3.23 16 5 C -0.20 -6.35 8.28 22.35 0.18 -6.16 16 6 C -0.05 -2.03 4.79 -19.86 -0.10 -2.12 16 7 C 0.25 10.27 0.66 2.04 0.00 10.27 16 8 C -0.13 -5.32 8.24 71.98 0.59 -4.73 16 9 N -0.83 -30.28 5.14 -157.52 -0.81 -31.08 16 10 C -0.51 -27.19 8.15 25.60 0.21 -26.98 16 11 H 0.04 2.56 6.27 -2.91 -0.02 2.54 16 12 C 0.03 1.59 5.45 84.66 0.46 2.05 16 13 N -0.95 -59.55 13.96 21.45 0.30 -59.25 16 14 Si 0.93 44.40 23.86 68.60 1.64 46.04 16 15 H -0.30 -14.66 6.87 99.48 0.68 -13.97 16 16 H -0.33 -16.98 7.11 99.48 0.71 -16.28 16 17 H -0.15 -6.27 5.16 99.48 0.51 -5.75 16 18 C -0.14 -5.38 8.88 22.27 0.20 -5.18 16 19 C -0.11 -3.61 9.98 22.35 0.22 -3.38 16 20 C 0.05 1.57 6.72 22.57 0.15 1.72 16 21 O -0.50 -13.73 13.29 -79.60 -1.06 -14.78 16 22 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 23 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.07 1.25 7.67 -2.39 -0.02 1.23 16 26 H 0.07 1.26 7.66 -2.39 -0.02 1.24 16 27 H 0.15 3.83 4.70 -2.91 -0.01 3.82 16 28 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.04 1.80 3.27 -2.39 -0.01 1.80 16 30 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.34 12.22 8.98 -89.70 -0.81 11.41 16 32 H 0.33 9.60 7.36 -89.69 -0.66 8.94 16 33 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 34 H 0.12 5.06 6.41 -2.91 -0.02 5.04 16 35 H 0.15 4.14 8.06 -2.91 -0.02 4.12 16 36 H 0.40 7.27 9.06 -74.05 -0.67 6.60 16 Total: -1.00 -69.19 287.36 1.27 -67.92 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: -1.22 Total: 32.35 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: 3.21 Total: -31.47 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -0.51 Total: -90.33 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -1.85 Total: -24.50 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.64 Total: 46.04 kcal Total: -69.19 1.27 -67.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687769775.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.310 kcal (2) G-P(sol) polarization free energy of solvation -69.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds