Wall clock time and date at job start Mon Mar 30 2020 04:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46773 * 2 1 4 4 C 1.53001 * 109.47096 * 119.99653 * 2 1 3 5 5 O 1.42895 * 109.47294 * 305.00480 * 4 2 1 6 6 C 1.52994 * 109.47191 * 240.00222 * 2 1 3 7 7 H 1.09003 * 109.47504 * 304.99677 * 6 2 1 8 8 N 1.46899 * 109.46993 * 185.00072 * 6 2 1 9 9 C 1.50697 * 109.47472 * 64.99901 * 6 2 1 10 10 C 1.38662 * 119.87673 * 80.25154 * 9 6 2 11 11 C 1.38615 * 120.49843 * 180.30438 * 10 9 6 12 12 C 1.37632 * 120.25267 * 359.72049 * 11 10 9 13 13 C 1.40699 * 119.74395 * 0.02562 * 12 11 10 14 14 C 1.41391 * 120.24464 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00288 * 204.36216 * 14 13 12 16 16 C 1.39941 * 120.00090 * 24.36955 * 14 13 12 17 17 N 1.30828 * 120.00108 * 17.86320 * 16 14 13 18 18 Si 1.86798 * 120.00031 * 197.87337 * 16 14 13 19 19 H 1.48499 * 109.47362 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47633 * 119.99519 * 18 16 14 21 21 H 1.48508 * 109.47160 * 239.99337 * 18 16 14 22 22 C 1.37598 * 119.87931 * 259.99968 * 9 6 2 23 23 H 1.09004 * 109.47039 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47163 * 300.00100 * 1 2 3 25 25 H 1.08998 * 109.47097 * 60.00013 * 1 2 3 26 26 H 0.96701 * 113.99700 * 179.97438 * 3 2 1 27 27 H 1.09007 * 109.46569 * 65.00489 * 4 2 1 28 28 H 1.08997 * 109.46784 * 185.00131 * 4 2 1 29 29 H 0.96697 * 113.99867 * 179.97438 * 5 4 2 30 30 H 1.00907 * 111.00029 * 299.99398 * 8 6 2 31 31 H 1.00903 * 111.00144 * 63.95138 * 8 6 2 32 32 H 1.07994 * 119.74778 * 0.02562 * 10 9 6 33 33 H 1.08008 * 119.87029 * 179.70560 * 11 10 9 34 34 H 1.08004 * 120.12878 * 179.97438 * 12 11 10 35 35 H 0.97002 * 119.99913 * 180.02562 * 17 16 14 36 36 H 1.08006 * 120.12447 * 359.97438 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.4702 -0.1188 2.4130 6 6 2.0400 -0.7212 -1.2492 7 1 1.6055 -1.7198 -1.2952 8 7 3.5040 -0.8266 -1.1903 9 6 1.6414 0.0571 -2.4766 10 6 2.3802 1.1655 -2.8618 11 6 2.0213 1.8944 -3.9849 12 6 0.9288 1.5210 -4.7340 13 6 0.1749 0.3949 -4.3556 14 6 -0.9491 0.0015 -5.1178 15 1 -1.7381 -0.5754 -4.6583 16 6 -1.0393 0.3595 -6.4676 17 7 0.0314 0.7388 -7.1167 18 14 -2.6885 0.2961 -7.3426 19 1 -3.7349 -0.1624 -6.3939 20 1 -3.0346 1.6498 -7.8455 21 1 -2.6071 -0.6502 -8.4843 22 6 0.5487 -0.3379 -3.2137 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 2.9703 1.4237 0.0004 27 1 1.7517 -1.7715 1.2056 28 1 3.1263 -0.6442 1.2952 29 1 1.7499 -0.5266 3.2440 30 1 3.9309 0.0867 -1.1471 31 1 3.7944 -1.3987 -0.4115 32 1 3.2389 1.4657 -2.2798 33 1 2.6012 2.7589 -4.2730 34 1 0.6508 2.0906 -5.6084 35 1 -0.0312 0.9873 -8.0523 36 1 -0.0227 -1.2042 -2.9145 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713782355.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:24 Heat of formation + Delta-G solvation = -109.021161 kcal Electronic energy + Delta-G solvation = -18858.473444 eV Core-core repulsion = 15919.891350 eV Total energy + Delta-G solvation = -2938.582094 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.82102 -38.85122 -36.98822 -35.67719 -34.69515 -32.25838 -31.48550 -30.95106 -27.24247 -27.07579 -25.65768 -22.57199 -22.15728 -21.01797 -19.08880 -18.34051 -17.71421 -17.41695 -17.02511 -16.32673 -16.10156 -15.97619 -15.32445 -15.04929 -14.41952 -14.19842 -13.81251 -13.73282 -13.40466 -13.28028 -13.01929 -12.89348 -12.81193 -12.64521 -12.39892 -12.10984 -11.96995 -11.56120 -11.20896 -11.02632 -10.99568 -10.93739 -9.58105 -9.28643 -9.01913 -8.59269 -6.29395 1.04871 1.14017 1.37335 1.51876 1.54357 2.22053 2.75352 3.09227 3.39979 3.64774 3.77107 3.88874 3.96964 4.22545 4.27384 4.41405 4.44995 4.61564 4.73419 4.79684 4.95457 5.01878 5.09533 5.17533 5.31234 5.36590 5.58383 5.74322 6.07874 6.10213 6.16923 6.29577 6.44446 6.62580 6.76731 6.81918 6.91199 6.99705 7.10908 8.38073 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.035238 B = 0.005668 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.400114 B = 4938.967187 C = 5319.440690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.108 3.892 3 O -0.556 6.556 4 C 0.055 3.945 5 O -0.580 6.580 6 C 0.124 3.876 7 H 0.088 0.912 8 N -0.837 5.837 9 C -0.039 4.039 10 C -0.198 4.198 11 C -0.120 4.120 12 C -0.193 4.193 13 C 0.075 3.925 14 C -0.505 4.505 15 H 0.071 0.929 16 C 0.034 3.966 17 N -0.831 5.831 18 Si 0.979 3.021 19 H -0.259 1.259 20 H -0.266 1.266 21 H -0.265 1.265 22 C -0.228 4.228 23 H 0.077 0.923 24 H 0.059 0.941 25 H 0.039 0.961 26 H 0.373 0.627 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.395 0.605 30 H 0.345 0.655 31 H 0.353 0.647 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.285 0.715 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.820 -3.449 13.542 14.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.065 3.935 3 O -0.362 6.362 4 C -0.023 4.023 5 O -0.388 6.388 6 C 0.012 3.988 7 H 0.106 0.894 8 N -0.371 5.371 9 C -0.040 4.040 10 C -0.218 4.218 11 C -0.138 4.138 12 C -0.213 4.213 13 C 0.073 3.927 14 C -0.535 4.535 15 H 0.089 0.911 16 C -0.179 4.179 17 N -0.457 5.457 18 Si 0.800 3.200 19 H -0.183 1.183 20 H -0.190 1.190 21 H -0.190 1.190 22 C -0.248 4.248 23 H 0.096 0.904 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.222 0.778 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.245 0.755 30 H 0.161 0.839 31 H 0.168 0.832 32 H 0.133 0.867 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.959 -3.245 12.165 13.198 hybrid contribution 0.017 0.103 0.414 0.427 sum 3.976 -3.142 12.579 13.561 Atomic orbital electron populations 1.21572 0.93481 1.02329 1.01530 1.21989 0.95689 0.82971 0.92821 1.86708 1.26408 1.26131 1.96957 1.22832 0.97400 0.96595 0.85462 1.86538 1.73232 1.62066 1.16952 1.20759 0.88988 0.98003 0.91030 0.89390 1.58738 1.05591 1.20601 1.52155 1.19172 0.94586 0.95351 0.94865 1.20323 1.02775 0.99209 0.99458 1.20959 0.97146 0.99420 0.96258 1.21254 0.99368 0.99036 1.01617 1.17907 0.92402 0.90493 0.91868 1.19789 1.05399 1.32793 0.95503 0.91051 1.26721 1.01224 0.91865 0.98133 1.69906 1.30963 1.33914 1.10947 0.85208 0.77666 0.78998 0.78094 1.18264 1.19027 1.18970 1.20924 1.01108 1.01959 1.00807 0.90404 0.92184 0.94167 0.77828 0.91182 0.91334 0.75496 0.83907 0.83172 0.86706 0.87800 0.88736 0.90410 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.28 8.36 71.98 0.60 -3.68 16 2 C 0.11 3.03 0.68 -10.79 -0.01 3.02 16 3 O -0.56 -17.16 11.45 -144.34 -1.65 -18.82 16 4 C 0.06 1.06 5.55 71.98 0.40 1.46 16 5 O -0.58 -11.98 12.75 -144.34 -1.84 -13.82 16 6 C 0.12 3.83 2.49 44.17 0.11 3.94 16 7 H 0.09 2.71 7.99 -2.39 -0.02 2.69 16 8 N -0.84 -20.48 8.84 -171.81 -1.52 -21.99 16 9 C -0.04 -1.66 4.10 -19.92 -0.08 -1.74 16 10 C -0.20 -8.50 8.31 22.46 0.19 -8.31 16 11 C -0.12 -5.79 10.02 22.22 0.22 -5.57 16 12 C -0.19 -10.73 8.70 22.73 0.20 -10.54 16 13 C 0.08 4.25 5.58 -21.29 -0.12 4.13 16 14 C -0.50 -28.54 9.05 23.46 0.21 -28.33 16 15 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 16 C 0.03 1.82 5.14 85.25 0.44 2.25 16 17 N -0.83 -45.61 10.95 21.83 0.24 -45.37 16 18 Si 0.98 40.04 29.59 68.60 2.03 42.07 16 19 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 20 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 21 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 22 C -0.23 -11.37 8.48 22.73 0.19 -11.17 16 23 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 24 H 0.06 1.96 7.56 -2.39 -0.02 1.94 16 25 H 0.04 1.59 6.75 -2.39 -0.02 1.57 16 26 H 0.37 8.62 7.40 -74.06 -0.55 8.08 16 27 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.07 0.95 7.00 -2.39 -0.02 0.94 16 29 H 0.40 3.93 9.12 -74.06 -0.68 3.26 16 30 H 0.35 7.75 6.00 -89.69 -0.54 7.21 16 31 H 0.35 6.07 7.41 -89.69 -0.66 5.40 16 32 H 0.12 4.07 6.14 -2.91 -0.02 4.05 16 33 H 0.10 4.50 8.06 -2.91 -0.02 4.47 16 34 H 0.09 5.53 6.16 -2.91 -0.02 5.51 16 35 H 0.29 14.14 8.30 -92.71 -0.77 13.37 16 36 H 0.09 4.35 8.03 -2.91 -0.02 4.33 16 Total: -1.00 -69.76 291.46 -1.68 -71.44 By element: Atomic # 1 Polarization: 42.32 SS G_CDS: -1.29 Total: 41.03 kcal Atomic # 6 Polarization: -56.89 SS G_CDS: 2.35 Total: -54.53 kcal Atomic # 7 Polarization: -66.09 SS G_CDS: -1.28 Total: -67.37 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -3.49 Total: -32.64 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -69.76 -1.68 -71.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713782355.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.585 kcal (2) G-P(sol) polarization free energy of solvation -69.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds