Wall clock time and date at job start Mon Mar 30 2020 05:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47530 * 294.22243 * 3 2 1 5 5 C 1.37102 * 119.99447 * 268.29788 * 4 3 2 6 6 H 1.07999 * 119.99771 * 189.62293 * 5 4 3 7 7 C 1.38948 * 120.00135 * 9.62655 * 5 4 3 8 8 N 1.31403 * 120.00246 * 29.70951 * 7 5 4 9 9 Si 1.86806 * 119.99828 * 209.70796 * 7 5 4 10 10 H 1.48501 * 109.46790 * 59.99943 * 9 7 5 11 11 H 1.48502 * 109.47088 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47293 * 300.00202 * 9 7 5 13 13 C 1.34772 * 120.00477 * 88.29292 * 4 3 2 14 14 O 1.21289 * 120.00271 * 2.84735 * 13 4 3 15 15 C 1.50708 * 120.00350 * 182.85072 * 13 4 3 16 16 H 1.09006 * 109.46531 * 304.75314 * 15 13 4 17 17 C 1.52999 * 109.46919 * 64.74764 * 15 13 4 18 18 C 1.52994 * 109.47344 * 184.75345 * 15 13 4 19 19 H 1.09007 * 109.86763 * 301.00300 * 18 15 13 20 20 C 1.54099 * 109.87695 * 179.97438 * 18 15 13 21 21 C 1.54816 * 104.30389 * 238.32421 * 20 18 15 22 22 C 1.55225 * 101.98807 * 339.26691 * 21 20 18 23 23 O 1.43744 * 110.00469 * 62.08839 * 18 15 13 24 24 H 4.40642 * 5.51418 * 179.97438 * 4 1 2 25 25 H 1.08996 * 109.47311 * 174.21580 * 3 2 1 26 26 H 1.09006 * 109.46890 * 54.21761 * 3 2 1 27 27 H 0.97003 * 120.00375 * 179.97438 * 8 7 5 28 28 H 1.09006 * 109.46877 * 177.59678 * 17 15 13 29 29 H 1.08998 * 109.47728 * 297.59970 * 17 15 13 30 30 H 1.09005 * 109.47272 * 57.60236 * 17 15 13 31 31 H 1.09001 * 110.48923 * 357.07031 * 20 18 15 32 32 H 1.09004 * 110.48662 * 119.58526 * 20 18 15 33 33 H 1.09004 * 110.89973 * 97.38179 * 21 20 18 34 34 H 1.08998 * 110.90587 * 220.98924 * 21 20 18 35 35 H 1.09011 * 110.51474 * 278.38151 * 22 21 20 36 36 H 1.08991 * 110.78261 * 155.50336 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5658 1.2595 5 6 3.3960 0.2564 2.3251 6 1 3.9000 -0.1335 3.1971 7 6 3.0125 1.5913 2.2831 8 7 1.9580 1.9503 1.5861 9 14 3.9960 2.8755 3.2176 10 1 5.3944 2.8880 2.7180 11 1 3.3852 4.2133 3.0115 12 1 3.9906 2.5460 4.6656 13 6 3.3272 -1.8950 1.3709 14 8 3.1454 -2.6165 0.4131 15 6 3.7682 -2.4850 2.6857 16 1 4.6843 -1.9945 3.0149 17 6 2.6724 -2.2742 3.7324 18 6 4.0260 -3.9830 2.5116 19 1 3.1183 -4.4773 2.1652 20 6 4.4784 -4.5960 3.8511 21 6 5.8651 -5.2108 3.5415 22 6 5.8122 -5.3643 1.9977 23 8 5.0880 -4.1926 1.5659 24 1 -1.0499 0.0001 0.0003 25 1 3.0089 1.0232 -0.1036 26 1 3.0096 -0.6001 -0.8337 27 1 1.6900 2.8822 1.5571 28 1 2.9732 -2.7383 4.6718 29 1 2.5186 -1.2064 3.8876 30 1 1.7447 -2.7280 3.3838 31 1 4.5657 -3.8227 4.6144 32 1 3.7808 -5.3699 4.1715 33 1 6.6658 -4.5331 3.8375 34 1 5.9780 -6.1801 4.0271 35 1 5.2745 -6.2716 1.7222 36 1 6.8169 -5.3718 1.5752 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720613734.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:37 Heat of formation + Delta-G solvation = -15.979508 kcal Electronic energy + Delta-G solvation = -19171.925051 eV Core-core repulsion = 16237.377545 eV Total energy + Delta-G solvation = -2934.547506 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.55651 -38.14647 -35.00549 -33.39834 -31.87252 -31.54863 -31.09175 -27.68482 -26.26892 -24.90883 -23.49135 -21.94195 -20.28139 -18.89495 -17.84381 -16.70951 -16.38585 -15.50346 -15.31677 -14.97035 -14.34416 -14.09910 -13.86756 -13.39300 -12.96171 -12.81487 -12.30144 -11.93680 -11.81616 -11.56122 -11.41680 -11.21890 -11.02225 -10.92907 -10.69848 -10.67054 -10.44783 -10.29006 -10.22619 -9.29702 -9.22264 -9.09395 -8.68111 -8.21300 -7.90097 -6.39621 -3.82502 3.11607 3.22545 3.24681 3.79192 4.02766 4.17285 4.27657 4.31513 4.80061 4.85624 4.97827 5.08602 5.21007 5.44209 5.52178 5.69804 5.77471 5.85373 5.88402 5.91210 5.99784 6.04549 6.16236 6.23747 6.39936 6.51206 6.75668 6.80948 6.91278 6.95051 7.20647 7.40122 7.47031 7.69347 8.35003 9.02238 9.08843 9.53337 9.95849 10.60604 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.022886 B = 0.007651 C = 0.006435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.143103 B = 3658.905967 C = 4350.379538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.098 4.098 3 C 0.239 3.761 4 N -0.441 5.441 5 C -0.348 4.348 6 H 0.105 0.895 7 C 0.041 3.959 8 N -0.840 5.840 9 Si 0.905 3.095 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.470 3.530 14 O -0.593 6.593 15 C -0.088 4.088 16 H 0.089 0.911 17 C -0.145 4.145 18 C 0.101 3.899 19 H 0.068 0.932 20 C -0.154 4.154 21 C -0.155 4.155 22 C 0.042 3.958 23 O -0.352 6.352 24 H 0.197 0.803 25 H 0.100 0.900 26 H 0.070 0.930 27 H 0.270 0.730 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.322 -7.372 4.958 9.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.100 4.100 3 C 0.116 3.884 4 N -0.160 5.160 5 C -0.475 4.475 6 H 0.122 0.878 7 C -0.166 4.166 8 N -0.476 5.476 9 Si 0.731 3.269 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.258 3.742 14 O -0.479 6.479 15 C -0.110 4.110 16 H 0.107 0.893 17 C -0.202 4.202 18 C 0.043 3.957 19 H 0.086 0.914 20 C -0.192 4.192 21 C -0.193 4.193 22 C -0.036 4.036 23 O -0.271 6.271 24 H 0.214 0.786 25 H 0.118 0.882 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.172 -7.381 4.245 9.481 hybrid contribution 0.062 0.786 0.855 1.163 sum 4.234 -6.595 5.100 9.350 Atomic orbital electron populations 1.24161 0.95287 1.06081 1.03839 1.23197 0.94367 0.95526 0.96886 1.18050 0.84131 0.99445 0.86786 1.43683 1.56419 1.04761 1.11096 1.19530 1.38445 0.90929 0.98588 0.87765 1.25159 0.94957 0.98513 0.97951 1.70223 1.18805 1.18230 1.40324 0.86352 0.80645 0.79977 0.79903 1.19862 1.21072 1.19881 1.19902 0.82715 0.82001 0.89540 1.90549 1.57533 1.59787 1.39985 1.21132 1.00401 0.93750 0.95694 0.89310 1.21837 0.97190 1.04904 0.96281 1.22504 0.91018 0.95322 0.86896 0.91435 1.23091 0.96571 1.00673 0.98829 1.23169 0.97905 1.01157 0.97060 1.23526 0.97017 0.89899 0.93113 1.89068 1.44451 1.44783 1.48784 0.78599 0.88194 0.91212 0.91976 0.93086 0.89050 0.93168 0.90079 0.91032 0.90704 0.90818 0.92863 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.38 19.25 29.55 0.57 -5.81 16 2 C -0.10 -2.48 11.56 -37.12 -0.43 -2.91 16 3 C 0.24 5.99 5.17 -6.83 -0.04 5.95 16 4 N -0.44 -11.23 2.59 -117.94 -0.31 -11.53 16 5 C -0.35 -8.62 7.71 -14.93 -0.12 -8.74 16 6 H 0.10 2.43 5.49 -52.49 -0.29 2.14 16 7 C 0.04 1.01 4.74 -17.47 -0.08 0.93 16 8 N -0.84 -21.62 9.59 55.50 0.53 -21.09 16 9 Si 0.91 19.03 29.64 -169.99 -5.04 13.99 16 10 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 11 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 13 C 0.47 11.68 6.81 -10.98 -0.07 11.61 16 14 O -0.59 -16.33 15.06 -8.96 -0.13 -16.46 16 15 C -0.09 -1.78 1.55 -91.77 -0.14 -1.93 16 16 H 0.09 1.77 7.40 -51.93 -0.38 1.38 16 17 C -0.14 -2.63 8.61 37.16 0.32 -2.31 16 18 C 0.10 1.83 2.48 -26.16 -0.06 1.77 16 19 H 0.07 1.32 8.03 -51.93 -0.42 0.90 16 20 C -0.15 -2.07 5.98 -25.20 -0.15 -2.22 16 21 C -0.16 -1.85 7.17 -24.60 -0.18 -2.02 16 22 C 0.04 0.59 7.72 38.34 0.30 0.88 16 23 O -0.35 -6.93 10.38 -49.74 -0.52 -7.45 16 24 H 0.20 3.72 7.80 -54.09 -0.42 3.30 16 25 H 0.10 2.51 6.42 -51.93 -0.33 2.17 16 26 H 0.07 1.71 7.44 -51.93 -0.39 1.33 16 27 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 28 H 0.05 0.75 6.47 -51.93 -0.34 0.41 16 29 H 0.09 1.85 5.67 -51.93 -0.29 1.55 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.04 6.50 -51.93 -0.34 0.70 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 295.72 15.07 4.46 4.46 Total: -1.00 -30.44 295.72 -5.96 -36.40 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -4.87 Total: 6.49 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -0.09 Total: -4.80 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.23 Total: -32.62 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.65 Total: -23.91 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.04 Total: 13.99 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.44 -5.96 -36.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720613734.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.422 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds