Wall clock time and date at job start Mon Mar 30 2020 05:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47530 * 294.22243 * 3 2 1 5 5 C 1.37102 * 119.99447 * 268.29788 * 4 3 2 6 6 H 1.07999 * 119.99771 * 189.62293 * 5 4 3 7 7 C 1.38948 * 120.00135 * 9.62655 * 5 4 3 8 8 N 1.31403 * 120.00246 * 29.70951 * 7 5 4 9 9 Si 1.86806 * 119.99828 * 209.70796 * 7 5 4 10 10 H 1.48501 * 109.46790 * 59.99943 * 9 7 5 11 11 H 1.48502 * 109.47088 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47293 * 300.00202 * 9 7 5 13 13 C 1.34772 * 120.00477 * 88.29292 * 4 3 2 14 14 O 1.21289 * 120.00271 * 2.84735 * 13 4 3 15 15 C 1.50708 * 120.00350 * 182.85072 * 13 4 3 16 16 H 1.09006 * 109.46531 * 304.75314 * 15 13 4 17 17 C 1.52999 * 109.46919 * 64.74764 * 15 13 4 18 18 C 1.52994 * 109.47344 * 184.75345 * 15 13 4 19 19 H 1.09007 * 109.86763 * 301.00300 * 18 15 13 20 20 C 1.54099 * 109.87695 * 179.97438 * 18 15 13 21 21 C 1.54816 * 104.30389 * 238.32421 * 20 18 15 22 22 C 1.55225 * 101.98807 * 339.26691 * 21 20 18 23 23 O 1.43744 * 110.00469 * 62.08839 * 18 15 13 24 24 H 4.40642 * 5.51418 * 179.97438 * 4 1 2 25 25 H 1.08996 * 109.47311 * 174.21580 * 3 2 1 26 26 H 1.09006 * 109.46890 * 54.21761 * 3 2 1 27 27 H 0.97003 * 120.00375 * 179.97438 * 8 7 5 28 28 H 1.09006 * 109.46877 * 177.59678 * 17 15 13 29 29 H 1.08998 * 109.47728 * 297.59970 * 17 15 13 30 30 H 1.09005 * 109.47272 * 57.60236 * 17 15 13 31 31 H 1.09001 * 110.48923 * 357.07031 * 20 18 15 32 32 H 1.09004 * 110.48662 * 119.58526 * 20 18 15 33 33 H 1.09004 * 110.89973 * 97.38179 * 21 20 18 34 34 H 1.08998 * 110.90587 * 220.98924 * 21 20 18 35 35 H 1.09011 * 110.51474 * 278.38151 * 22 21 20 36 36 H 1.08991 * 110.78261 * 155.50336 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5658 1.2595 5 6 3.3960 0.2564 2.3251 6 1 3.9000 -0.1335 3.1971 7 6 3.0125 1.5913 2.2831 8 7 1.9580 1.9503 1.5861 9 14 3.9960 2.8755 3.2176 10 1 5.3944 2.8880 2.7180 11 1 3.3852 4.2133 3.0115 12 1 3.9906 2.5460 4.6656 13 6 3.3272 -1.8950 1.3709 14 8 3.1454 -2.6165 0.4131 15 6 3.7682 -2.4850 2.6857 16 1 4.6843 -1.9945 3.0149 17 6 2.6724 -2.2742 3.7324 18 6 4.0260 -3.9830 2.5116 19 1 3.1183 -4.4773 2.1652 20 6 4.4784 -4.5960 3.8511 21 6 5.8651 -5.2108 3.5415 22 6 5.8122 -5.3643 1.9977 23 8 5.0880 -4.1926 1.5659 24 1 -1.0499 0.0001 0.0003 25 1 3.0089 1.0232 -0.1036 26 1 3.0096 -0.6001 -0.8337 27 1 1.6900 2.8822 1.5571 28 1 2.9732 -2.7383 4.6718 29 1 2.5186 -1.2064 3.8876 30 1 1.7447 -2.7280 3.3838 31 1 4.5657 -3.8227 4.6144 32 1 3.7808 -5.3699 4.1715 33 1 6.6658 -4.5331 3.8375 34 1 5.9780 -6.1801 4.0271 35 1 5.2745 -6.2716 1.7222 36 1 6.8169 -5.3718 1.5752 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720613734.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:37 Heat of formation + Delta-G solvation = -33.975622 kcal Electronic energy + Delta-G solvation = -19172.705421 eV Core-core repulsion = 16237.377545 eV Total energy + Delta-G solvation = -2935.327876 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.11769 -39.74991 -36.94232 -34.98753 -33.74714 -33.10545 -32.59968 -29.08649 -28.03631 -26.77459 -24.98516 -23.13352 -21.65122 -20.69107 -19.64081 -18.42137 -18.13427 -16.87182 -16.76218 -16.46586 -16.10623 -15.88555 -15.60677 -14.70426 -14.42620 -14.32083 -14.07111 -13.84283 -13.49570 -13.04452 -12.88352 -12.63875 -12.48862 -12.28331 -12.22502 -12.12686 -11.94733 -11.79631 -11.42066 -11.21236 -11.08716 -10.62085 -10.49293 -10.13287 -9.85792 -8.28112 -5.77199 1.43465 1.52315 1.59578 1.91370 2.18066 2.34077 2.40916 3.01591 3.11983 3.20201 3.72150 3.87612 3.93222 4.07093 4.19310 4.25503 4.38531 4.51425 4.54445 4.67561 4.76819 4.86974 4.88598 4.91567 4.99678 5.03588 5.16631 5.23554 5.33841 5.36867 5.42931 5.54067 5.78209 6.19985 6.42513 7.11627 7.16744 7.61302 8.04105 8.72447 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.022886 B = 0.007651 C = 0.006435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.143103 B = 3658.905967 C = 4350.379538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.148 4.148 3 C 0.240 3.760 4 N -0.449 5.449 5 C -0.364 4.364 6 H 0.117 0.883 7 C 0.003 3.997 8 N -0.867 5.867 9 Si 0.975 3.025 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.261 1.261 13 C 0.452 3.548 14 O -0.631 6.631 15 C -0.083 4.083 16 H 0.092 0.908 17 C -0.134 4.134 18 C 0.099 3.901 19 H 0.043 0.957 20 C -0.146 4.146 21 C -0.144 4.144 22 C 0.029 3.971 23 O -0.397 6.397 24 H 0.236 0.764 25 H 0.092 0.908 26 H 0.060 0.940 27 H 0.269 0.731 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.037 0.963 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.061 0.939 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.963 -7.854 7.371 11.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.149 4.149 3 C 0.117 3.883 4 N -0.167 5.167 5 C -0.490 4.490 6 H 0.135 0.865 7 C -0.202 4.202 8 N -0.503 5.503 9 Si 0.799 3.201 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.185 1.185 13 C 0.242 3.758 14 O -0.519 6.519 15 C -0.104 4.104 16 H 0.110 0.890 17 C -0.191 4.191 18 C 0.041 3.959 19 H 0.061 0.939 20 C -0.184 4.184 21 C -0.181 4.181 22 C -0.047 4.047 23 O -0.316 6.316 24 H 0.253 0.747 25 H 0.110 0.890 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.112 0.888 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.125 0.875 35 H 0.079 0.921 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.819 -7.866 6.676 11.387 hybrid contribution -0.193 0.917 0.012 0.938 sum 4.626 -6.949 6.688 10.697 Atomic orbital electron populations 1.25104 0.96298 1.04010 1.01823 1.23501 0.95102 0.97472 0.98833 1.17926 0.84781 0.98710 0.86914 1.43952 1.56152 1.05342 1.11255 1.19895 1.38808 0.91343 0.98936 0.86521 1.25975 0.95308 0.99953 0.98959 1.70328 1.19903 1.18383 1.41683 0.85269 0.78690 0.76962 0.79159 1.19829 1.21380 1.18543 1.20841 0.82285 0.81653 0.91001 1.90502 1.59208 1.60525 1.41696 1.21168 1.00770 0.95099 0.93384 0.88995 1.21749 0.96098 1.03725 0.97521 1.22487 0.90307 0.93739 0.89391 0.93913 1.23077 0.97889 1.01409 0.96002 1.23155 0.96950 1.02884 0.95115 1.23838 0.97205 0.88454 0.95178 1.89020 1.45178 1.47098 1.50351 0.74723 0.88981 0.92154 0.92083 0.88769 0.91135 0.94384 0.88881 0.88904 0.90204 0.87541 0.92078 0.88305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -11.68 19.25 74.32 1.43 -10.25 16 2 C -0.15 -7.63 11.56 31.13 0.36 -7.27 16 3 C 0.24 12.55 5.17 84.57 0.44 12.98 16 4 N -0.45 -23.52 2.59 -645.42 -1.67 -25.19 16 5 C -0.36 -18.10 7.71 84.04 0.65 -17.45 16 6 H 0.12 5.37 5.49 -2.91 -0.02 5.36 16 7 C 0.00 0.13 4.74 84.93 0.40 0.53 16 8 N -0.87 -44.94 9.59 21.66 0.21 -44.73 16 9 Si 0.98 38.60 29.64 68.60 2.03 40.64 16 10 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 11 H -0.29 -11.47 7.11 99.48 0.71 -10.76 16 12 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 13 C 0.45 23.16 6.81 87.66 0.60 23.76 16 14 O -0.63 -36.32 15.06 10.81 0.16 -36.16 16 15 C -0.08 -3.34 1.55 -11.54 -0.02 -3.36 16 16 H 0.09 3.60 7.40 -2.38 -0.02 3.58 16 17 C -0.13 -4.72 8.61 71.98 0.62 -4.10 16 18 C 0.10 3.55 2.48 30.96 0.08 3.63 16 19 H 0.04 1.71 8.03 -2.38 -0.02 1.69 16 20 C -0.15 -3.48 5.98 31.59 0.19 -3.29 16 21 C -0.14 -2.91 7.17 31.98 0.23 -2.68 16 22 C 0.03 0.78 7.72 72.75 0.56 1.34 16 23 O -0.40 -15.68 10.38 -135.11 -1.40 -17.08 16 24 H 0.24 8.41 7.80 -4.42 -0.03 8.38 16 25 H 0.09 4.84 6.42 -2.39 -0.02 4.83 16 26 H 0.06 3.16 7.44 -2.38 -0.02 3.15 16 27 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 28 H 0.09 2.47 6.47 -2.38 -0.02 2.45 16 29 H 0.07 2.79 5.67 -2.39 -0.01 2.78 16 30 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.09 2.00 6.50 -2.39 -0.02 1.99 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -67.75 295.72 5.93 -61.82 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 1.07 Total: 26.87 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 5.53 Total: -6.15 kcal Atomic # 7 Polarization: -68.46 SS G_CDS: -1.46 Total: -69.93 kcal Atomic # 8 Polarization: -52.00 SS G_CDS: -1.24 Total: -53.24 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.64 kcal Total: -67.75 5.93 -61.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720613734.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.845 kcal (2) G-P(sol) polarization free energy of solvation -67.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds