Wall clock time and date at job start Mon Mar 30 2020 05:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46472 * 2 1 4 4 C 1.52998 * 109.47123 * 239.99766 * 2 1 3 5 5 C 1.50709 * 109.46858 * 174.99678 * 4 2 1 6 6 C 1.34514 * 125.78733 * 89.71523 * 5 4 2 7 7 C 1.41377 * 106.83995 * 179.88960 * 6 5 4 8 8 C 1.34513 * 106.84109 * 0.37120 * 7 6 5 9 9 O 1.34299 * 125.78771 * 270.02712 * 5 4 2 10 10 N 1.46505 * 109.47224 * 119.99521 * 2 1 3 11 11 C 1.34778 * 119.99943 * 275.00355 * 10 2 1 12 12 O 1.21277 * 120.00059 * 359.97438 * 11 10 2 13 13 C 1.50697 * 119.99637 * 180.02562 * 11 10 2 14 14 H 1.09002 * 109.47120 * 299.99695 * 13 11 10 15 15 C 1.52997 * 109.47466 * 59.99942 * 13 11 10 16 16 C 1.50708 * 109.47025 * 180.02562 * 13 11 10 17 17 H 1.08000 * 119.99723 * 359.97438 * 16 13 11 18 18 C 1.37873 * 119.99930 * 179.97438 * 16 13 11 19 19 N 1.31509 * 120.00195 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99968 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.46680 * 60.00159 * 20 18 16 22 22 H 1.48492 * 109.47298 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46944 * 300.00675 * 20 18 16 24 24 H 1.09006 * 109.46801 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47469 * 299.99928 * 1 2 3 26 26 H 1.08993 * 109.47326 * 60.00755 * 1 2 3 27 27 H 1.08993 * 109.47251 * 294.99513 * 4 2 1 28 28 H 1.09002 * 109.47210 * 55.00020 * 4 2 1 29 29 H 1.08003 * 126.58111 * 0.02858 * 6 5 4 30 30 H 1.07998 * 126.57978 * 180.12674 * 7 6 5 31 31 H 1.08003 * 125.79004 * 179.79296 * 8 7 6 32 32 H 0.97000 * 119.99611 * 94.99857 * 10 2 1 33 33 H 1.09002 * 109.47153 * 59.99773 * 15 13 11 34 34 H 1.09001 * 109.46832 * 299.99964 * 15 13 11 35 35 H 1.09004 * 109.47261 * 179.97438 * 15 13 11 36 36 H 0.97006 * 120.00358 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6148 -1.3127 6 6 4.4156 -1.4819 -0.7702 7 6 5.7105 -1.0007 -1.0709 8 6 5.5507 0.1361 -1.7720 9 8 4.2351 0.3649 -1.9154 10 7 2.0184 -0.6905 1.1963 11 6 2.1470 -0.0181 2.3572 12 8 1.8590 1.1587 2.4115 13 6 2.6499 -0.7283 3.5875 14 1 1.9777 -1.5506 3.8326 15 6 4.0527 -1.2782 3.3215 16 6 2.6999 0.2400 4.7413 17 1 2.3980 1.2670 4.5978 18 6 3.1308 -0.1853 5.9800 19 7 3.4988 -1.4358 6.1545 20 14 3.1934 1.0150 7.4100 21 1 1.8320 1.5491 7.6677 22 1 3.6888 0.3152 8.6223 23 1 4.1096 2.1351 7.0763 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.7517 -1.7715 -1.2055 28 1 1.6054 -0.2618 -2.1370 29 1 4.1742 -2.3756 -0.2138 30 1 6.6481 -1.4561 -0.7881 31 1 6.3456 0.7589 -2.1550 32 1 2.2490 -1.6317 1.1527 33 1 4.7248 -0.4559 3.0763 34 1 4.0161 -1.9786 2.4871 35 1 4.4166 -1.7915 4.2115 36 1 3.8024 -1.7349 7.0259 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821707185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:56 Heat of formation + Delta-G solvation = -38.067854 kcal Electronic energy + Delta-G solvation = -18692.825008 eV Core-core repulsion = 15757.319680 eV Total energy + Delta-G solvation = -2935.505328 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.43085 -38.95032 -35.83077 -33.67290 -32.82440 -31.70440 -30.39019 -29.29083 -26.16144 -25.08188 -23.06857 -21.66088 -21.04470 -20.22340 -19.32755 -17.30620 -16.34752 -16.08708 -15.69115 -15.49099 -14.70334 -14.38448 -13.78938 -13.51326 -13.10917 -12.84486 -12.70656 -12.70208 -12.39808 -12.03140 -11.89192 -11.53148 -11.38488 -10.96246 -10.89116 -10.67749 -10.63891 -10.19237 -9.91964 -9.76221 -8.93561 -8.55225 -8.43178 -8.30221 -8.24054 -5.99073 -4.01811 1.85190 2.77259 3.08995 3.38671 3.40739 3.46540 3.81573 3.95048 4.50869 4.68556 4.92753 5.06394 5.16214 5.33171 5.34411 5.41688 5.58338 5.67622 5.83305 5.94993 6.02466 6.09687 6.21538 6.39644 6.44561 6.63109 6.68601 6.89844 6.99469 7.16424 7.26340 7.53466 7.80989 8.03779 8.20961 8.52013 9.06874 9.32922 9.63579 11.08528 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.025135 B = 0.006048 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.707588 B = 4628.348518 C = 5196.555660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.085 0.915 4 C -0.046 4.046 5 C -0.008 4.008 6 C -0.200 4.200 7 C -0.208 4.208 8 C -0.050 4.050 9 O -0.178 6.178 10 N -0.739 5.739 11 C 0.522 3.478 12 O -0.547 6.547 13 C 0.029 3.971 14 H 0.051 0.949 15 C -0.128 4.128 16 C -0.500 4.500 17 H 0.073 0.927 18 C 0.058 3.942 19 N -0.898 5.898 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.199 0.801 32 H 0.393 0.607 33 H 0.029 0.971 34 H 0.011 0.989 35 H 0.091 0.909 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.305 -2.671 -16.006 16.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.103 0.897 4 C -0.084 4.084 5 C -0.058 4.058 6 C -0.219 4.219 7 C -0.227 4.227 8 C -0.117 4.117 9 O -0.074 6.074 10 N -0.394 5.394 11 C 0.312 3.688 12 O -0.423 6.423 13 C 0.008 3.992 14 H 0.068 0.932 15 C -0.186 4.186 16 C -0.538 4.538 17 H 0.091 0.909 18 C -0.142 4.142 19 N -0.537 5.537 20 Si 0.727 3.273 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.203 1.203 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.164 0.836 30 H 0.164 0.836 31 H 0.216 0.784 32 H 0.227 0.773 33 H 0.048 0.952 34 H 0.030 0.970 35 H 0.110 0.890 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.029 -1.668 -15.953 16.040 hybrid contribution 0.499 -0.054 0.886 1.018 sum 0.528 -1.722 -15.067 15.174 Atomic orbital electron populations 1.22169 0.95216 1.02010 1.02540 1.20777 0.93714 0.97776 0.83981 0.89660 1.20485 0.85740 1.02808 0.99338 1.22289 0.94591 0.89189 0.99731 1.21544 0.92192 1.02819 1.05373 1.21816 0.98901 0.98171 1.03857 1.23931 0.82997 0.99844 1.04972 1.83982 1.18155 1.44068 1.61232 1.46328 1.69697 1.13729 1.09601 1.21916 0.74996 0.87455 0.84450 1.90518 1.49838 1.16962 1.85012 1.18856 0.94634 0.96499 0.89179 0.93166 1.21702 0.97792 0.98613 1.00537 1.21119 1.43062 0.97011 0.92623 0.90911 1.24939 0.95266 0.95313 0.98713 1.69863 1.45065 1.15205 1.23594 0.86527 0.78545 0.81020 0.81166 1.20208 1.21391 1.20253 0.92500 0.91478 0.92180 0.88507 0.89032 0.83628 0.83648 0.78448 0.77286 0.95165 0.96993 0.89014 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.48 37.16 0.35 -1.73 16 2 C 0.14 2.10 2.56 -67.93 -0.17 1.92 16 3 H 0.09 1.50 7.58 -51.93 -0.39 1.11 16 4 C -0.05 -0.52 5.29 -27.88 -0.15 -0.67 16 5 C -0.01 -0.11 6.33 -35.62 -0.23 -0.33 16 6 C -0.20 -2.74 10.68 -39.70 -0.42 -3.17 16 7 C -0.21 -2.72 10.91 -39.71 -0.43 -3.15 16 8 C -0.05 -0.62 12.09 29.42 0.36 -0.27 16 9 O -0.18 -2.55 10.65 5.71 0.06 -2.49 16 10 N -0.74 -12.79 4.57 -53.81 -0.25 -13.04 16 11 C 0.52 12.03 7.11 -10.99 -0.08 11.95 16 12 O -0.55 -14.51 15.12 5.56 0.08 -14.42 16 13 C 0.03 0.74 2.64 -92.92 -0.24 0.50 16 14 H 0.05 1.31 8.14 -51.93 -0.42 0.88 16 15 C -0.13 -3.01 8.87 37.16 0.33 -2.68 16 16 C -0.50 -14.44 8.37 -34.44 -0.29 -14.73 16 17 H 0.07 2.22 6.75 -52.49 -0.35 1.87 16 18 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 19 N -0.90 -25.50 11.32 55.43 0.63 -24.87 16 20 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.15 1.81 8.06 -52.48 -0.42 1.39 16 30 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.20 1.68 8.06 -52.48 -0.42 1.26 16 32 H 0.39 5.93 8.02 -40.82 -0.33 5.61 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 35 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 307.63 15.07 4.64 4.64 Total: -1.00 -32.94 307.63 -6.08 -39.02 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.15 Total: 4.82 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -1.07 Total: -10.80 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.38 Total: -37.91 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: 0.14 Total: -16.91 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.94 -6.08 -39.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821707185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.948 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds