Wall clock time and date at job start Mon Mar 30 2020 05:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47065 * 2 1 4 4 C 1.50698 * 109.46679 * 240.00551 * 2 1 3 5 5 H 1.08001 * 120.00089 * 240.00065 * 4 2 1 6 6 C 1.37882 * 120.00151 * 59.99898 * 4 2 1 7 7 N 1.31511 * 119.99699 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99903 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47325 * 60.00275 * 8 6 4 10 10 H 1.48505 * 109.47033 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47222 * 299.99959 * 8 6 4 12 12 C 1.50698 * 109.47207 * 120.00989 * 2 1 3 13 13 O 1.21283 * 120.00472 * 119.99880 * 12 2 1 14 14 N 1.34777 * 119.99538 * 299.99218 * 12 2 1 15 15 C 1.46499 * 119.99665 * 179.72653 * 14 12 2 16 16 H 1.08999 * 109.47228 * 325.27715 * 15 14 12 17 17 C 1.52999 * 109.47341 * 85.27876 * 15 14 12 18 18 C 1.53001 * 109.47193 * 205.27836 * 15 14 12 19 19 C 1.50704 * 109.47083 * 64.99991 * 18 15 14 20 20 C 1.34519 * 125.78824 * 89.71978 * 19 18 15 21 21 C 1.41381 * 106.83775 * 179.88857 * 20 19 18 22 22 C 1.34510 * 106.84363 * 0.37116 * 21 20 19 23 23 O 1.34298 * 125.79111 * 270.02622 * 19 18 15 24 24 H 1.09001 * 109.47038 * 299.99432 * 1 2 3 25 25 H 1.08995 * 109.47475 * 59.99036 * 1 2 3 26 26 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 27 27 H 0.97004 * 119.99534 * 179.97438 * 7 6 4 28 28 H 0.97001 * 120.00485 * 0.02562 * 14 12 2 29 29 H 1.08999 * 109.47091 * 59.99755 * 17 15 14 30 30 H 1.08996 * 109.47098 * 180.02562 * 17 15 14 31 31 H 1.09001 * 109.46823 * 300.00095 * 17 15 14 32 32 H 1.08996 * 109.47384 * 185.00021 * 18 15 14 33 33 H 1.08994 * 109.47052 * 305.00248 * 18 15 14 34 34 H 1.07997 * 126.57735 * 0.02562 * 20 19 18 35 35 H 1.08000 * 126.57369 * 180.11849 * 21 20 19 36 36 H 1.07995 * 125.79316 * 179.79152 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9426 0.8299 -2.6033 8 14 2.3222 -1.1192 -4.0081 9 1 1.8277 -2.5194 -4.0084 10 1 1.8276 -0.4188 -5.2206 11 1 3.8072 -1.1187 -4.0080 12 6 2.0324 -0.7106 1.2303 13 8 2.7296 -1.6967 1.1190 14 7 1.7068 -0.2502 2.4545 15 6 2.1902 -0.9445 3.6505 16 1 2.2271 -2.0167 3.4582 17 6 3.5917 -0.4407 4.0013 18 6 1.2418 -0.6682 4.8189 19 6 -0.1070 -1.2727 4.5248 20 6 -0.4955 -2.5211 4.8414 21 6 -1.8259 -2.6641 4.3849 22 6 -2.1680 -1.4975 3.8094 23 8 -1.1230 -0.6585 3.8970 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3634 -1.0277 -0.0005 27 1 0.7085 1.1615 -3.4843 28 1 1.1490 0.5383 2.5436 29 1 3.5548 0.6315 4.1935 30 1 3.9515 -0.9576 4.8909 31 1 4.2674 -0.6375 3.1689 32 1 1.6476 -1.1105 5.7287 33 1 1.1358 0.4081 4.9541 34 1 0.0948 -3.2695 5.3490 35 1 -2.4468 -3.5430 4.4767 36 1 -3.1214 -1.2733 3.3543 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821707186.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:58 Heat of formation + Delta-G solvation = -59.940409 kcal Electronic energy + Delta-G solvation = -18707.852791 eV Core-core repulsion = 15771.398997 eV Total energy + Delta-G solvation = -2936.453793 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.40309 -40.64479 -37.21528 -35.74750 -33.95580 -33.24814 -31.99366 -30.56011 -27.20903 -27.14120 -24.82175 -22.66938 -22.40907 -21.22824 -21.05546 -18.42234 -18.25299 -17.71079 -17.15064 -16.78553 -16.29516 -15.88940 -15.48602 -14.92683 -14.56922 -14.26006 -13.96290 -13.68025 -13.59703 -13.46456 -13.33250 -12.97062 -12.86531 -12.67224 -12.59949 -12.46037 -12.23080 -12.01715 -11.95413 -11.05851 -10.78491 -10.60013 -10.27241 -9.96025 -9.28371 -8.15434 -6.25980 0.87693 1.39610 1.41461 1.50049 1.76062 1.97589 2.20553 2.36560 2.56058 3.13782 3.76655 3.87588 4.15788 4.19636 4.31593 4.35464 4.46559 4.62795 4.72834 4.78231 4.84097 4.93913 4.97236 4.99701 5.04561 5.13352 5.29230 5.36776 5.48884 5.65673 5.69821 5.76716 5.93293 6.21093 6.28588 6.75090 6.87451 7.39873 7.58978 8.90374 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.024989 B = 0.006113 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.220249 B = 4579.211740 C = 5164.482208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.023 3.977 3 H 0.039 0.961 4 C -0.530 4.530 5 H 0.047 0.953 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.273 1.273 11 H -0.275 1.275 12 C 0.523 3.477 13 O -0.589 6.589 14 N -0.720 5.720 15 C 0.139 3.861 16 H 0.060 0.940 17 C -0.155 4.155 18 C -0.037 4.037 19 C -0.022 4.022 20 C -0.228 4.228 21 C -0.230 4.230 22 C -0.052 4.052 23 O -0.188 6.188 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.016 0.984 27 H 0.265 0.735 28 H 0.406 0.594 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.030 0.970 32 H 0.139 0.861 33 H 0.105 0.895 34 H 0.159 0.841 35 H 0.162 0.838 36 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.219 -0.708 17.334 17.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.002 3.998 3 H 0.057 0.943 4 C -0.569 4.569 5 H 0.065 0.935 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.781 3.219 9 H -0.203 1.203 10 H -0.197 1.197 11 H -0.201 1.201 12 C 0.312 3.688 13 O -0.469 6.469 14 N -0.373 5.373 15 C 0.035 3.965 16 H 0.078 0.922 17 C -0.213 4.213 18 C -0.074 4.074 19 C -0.072 4.072 20 C -0.247 4.247 21 C -0.249 4.249 22 C -0.119 4.119 23 O -0.085 6.085 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.035 0.965 27 H 0.074 0.926 28 H 0.241 0.759 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.049 0.951 32 H 0.157 0.843 33 H 0.123 0.877 34 H 0.177 0.823 35 H 0.180 0.820 36 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -3.787 -0.996 17.029 17.474 hybrid contribution -0.107 -0.454 -1.109 1.203 sum -3.894 -1.451 15.920 16.454 Atomic orbital electron populations 1.21473 0.95255 0.98858 1.01376 1.18793 0.95142 0.95880 0.89969 0.94300 1.21266 1.31641 1.12730 0.91220 0.93453 1.25608 0.95185 0.95758 1.01424 1.69946 1.37159 1.23585 1.24368 0.85658 0.78731 0.78681 0.78852 1.20285 1.19740 1.20082 1.21436 0.78086 0.83545 0.85695 1.90490 1.40117 1.28690 1.87554 1.46115 1.54130 1.32194 1.04881 1.21049 0.94236 0.97048 0.84169 0.92210 1.22113 0.94619 1.02704 1.01858 1.20585 0.84911 1.03419 0.98453 1.22770 0.91139 0.93593 0.99706 1.21904 0.97306 0.97445 1.08025 1.22136 0.97352 1.00205 1.05216 1.24631 0.92820 0.89954 1.04517 1.84004 1.21348 1.42058 1.61052 0.93483 0.91094 0.96524 0.92569 0.75875 0.90642 0.88748 0.95065 0.84274 0.87699 0.82335 0.81996 0.75789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.33 8.87 71.98 0.64 -4.70 16 2 C 0.02 1.22 2.64 -12.29 -0.03 1.19 16 3 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 4 C -0.53 -31.66 8.37 25.60 0.21 -31.44 16 5 H 0.05 3.02 6.75 -2.91 -0.02 3.00 16 6 C 0.02 1.11 5.30 84.66 0.45 1.56 16 7 N -0.91 -52.22 11.32 21.45 0.24 -51.98 16 8 Si 0.96 45.85 29.54 68.60 2.03 47.87 16 9 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 12 C 0.52 24.83 7.12 87.66 0.62 25.46 16 13 O -0.59 -32.29 15.12 -3.04 -0.05 -32.34 16 14 N -0.72 -25.15 4.68 -442.54 -2.07 -27.22 16 15 C 0.14 3.86 2.56 44.99 0.12 3.98 16 16 H 0.06 2.01 7.57 -2.39 -0.02 1.99 16 17 C -0.15 -3.67 9.49 71.98 0.68 -2.99 16 18 C -0.04 -0.71 5.29 29.85 0.16 -0.55 16 19 C -0.02 -0.56 6.30 24.84 0.16 -0.40 16 20 C -0.23 -5.63 10.81 22.19 0.24 -5.39 16 21 C -0.23 -5.50 10.91 22.19 0.24 -5.26 16 22 C -0.05 -1.26 12.09 66.97 0.81 -0.45 16 23 O -0.19 -5.21 10.65 -2.46 -0.03 -5.24 16 24 H 0.05 1.87 7.56 -2.39 -0.02 1.85 16 25 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 26 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 28 H 0.41 12.48 8.02 -92.71 -0.74 11.74 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 35 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 36 H 0.23 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -73.03 307.83 4.75 -68.28 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.33 Total: 19.63 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: 4.30 Total: -19.01 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -1.83 Total: -79.20 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -0.07 Total: -37.58 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -73.03 4.75 -68.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821707186.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.342 kcal (2) G-P(sol) polarization free energy of solvation -73.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds