Wall clock time and date at job start Mon Mar 30 2020 05:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36018 * 116.99730 * 2 1 4 4 C 1.38500 * 120.08115 * 359.97438 * 3 2 1 5 5 C 1.38281 * 120.02105 * 180.02562 * 4 3 2 6 6 C 1.38254 * 120.18095 * 359.97438 * 5 4 3 7 7 C 1.38223 * 120.15779 * 359.97438 * 6 5 4 8 8 C 1.38729 * 119.97931 * 0.30137 * 7 6 5 9 9 N 1.39972 * 120.08631 * 179.69837 * 8 7 6 10 10 C 1.46900 * 111.00013 * 63.95207 * 9 8 7 11 11 C 1.46897 * 110.99810 * 299.99650 * 9 8 7 12 12 C 1.53005 * 109.47150 * 284.36218 * 11 9 8 13 13 H 1.09006 * 109.46311 * 54.71091 * 12 11 9 14 14 O 1.42897 * 109.47234 * 294.71651 * 12 11 9 15 15 C 1.50694 * 109.47023 * 174.71240 * 12 11 9 16 16 H 1.07998 * 120.00002 * 0.02562 * 15 12 11 17 17 C 1.37882 * 119.99899 * 180.02562 * 15 12 11 18 18 N 1.31510 * 119.99766 * 179.97438 * 17 15 12 19 19 Si 1.86806 * 119.99925 * 0.02562 * 17 15 12 20 20 H 1.48494 * 109.47442 * 90.00031 * 19 17 15 21 21 H 1.48495 * 109.46766 * 210.00183 * 19 17 15 22 22 H 1.48503 * 109.46597 * 329.99810 * 19 17 15 23 23 H 1.09000 * 109.46872 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47627 * 300.00200 * 1 2 3 25 25 H 1.09002 * 109.46891 * 60.00486 * 1 2 3 26 26 H 1.08001 * 119.99273 * 0.02562 * 4 3 2 27 27 H 1.08001 * 119.91399 * 180.02562 * 5 4 3 28 28 H 1.08001 * 119.92238 * 179.97438 * 6 5 4 29 29 H 1.08003 * 120.01023 * 180.02562 * 7 6 5 30 30 H 1.08998 * 109.47529 * 64.70788 * 10 9 8 31 31 H 1.08998 * 109.46875 * 184.71410 * 10 9 8 32 32 H 1.09000 * 109.46909 * 304.71021 * 10 9 8 33 33 H 1.08999 * 109.47358 * 44.36662 * 11 9 8 34 34 H 1.09008 * 109.46714 * 164.36895 * 11 9 8 35 35 H 0.96701 * 114.00133 * 299.99648 * 14 12 11 36 36 H 0.97003 * 119.99382 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2120 0.0000 4 6 1.2937 2.3746 -0.0005 5 6 1.9227 3.6060 -0.0011 6 6 3.3032 3.6813 -0.0005 7 6 4.0617 2.5258 0.0011 8 6 3.4375 1.2869 -0.0042 9 7 4.2034 0.1153 -0.0089 10 6 4.9954 -0.0009 1.2228 11 6 5.0655 0.0549 -1.1968 12 6 4.2228 -0.3103 -2.4205 13 1 3.3951 0.3927 -2.5145 14 8 3.7079 -1.6344 -2.2664 15 6 5.0800 -0.2456 -3.6582 16 1 6.1218 0.0282 -3.5798 17 6 4.5343 -0.5359 -4.8907 18 7 5.2823 -0.4788 -5.9709 19 14 2.7322 -1.0088 -5.0263 20 1 1.9136 0.2135 -5.2287 21 1 2.5466 -1.9255 -6.1797 22 1 2.3042 -1.6904 -3.7783 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.2151 2.3194 -0.0005 27 1 1.3340 4.5115 -0.0011 28 1 3.7901 4.6454 -0.0014 29 1 5.1400 2.5875 0.0019 30 1 4.3261 -0.1078 2.0764 31 1 5.6431 -0.8751 1.1571 32 1 5.6047 0.8941 1.3488 33 1 5.5345 1.0260 -1.3552 34 1 5.8366 -0.7011 -1.0480 35 1 4.3902 -2.3138 -2.1768 36 1 4.8985 -0.6835 -6.8379 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929297740.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:58 Heat of formation + Delta-G solvation = -40.601654 kcal Electronic energy + Delta-G solvation = -19194.679225 eV Core-core repulsion = 16259.064023 eV Total energy + Delta-G solvation = -2935.615202 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.13125 -37.80703 -36.45343 -34.95984 -32.14494 -29.97627 -29.74439 -28.83801 -26.96433 -25.74731 -24.02657 -21.91153 -21.30492 -19.99013 -17.90905 -17.20998 -16.11837 -15.82705 -15.45021 -14.69994 -14.55929 -14.48845 -14.20856 -14.08405 -13.49406 -13.29802 -12.81456 -12.53318 -12.23619 -12.04151 -11.72364 -11.51763 -11.37463 -11.12353 -10.86427 -10.80806 -10.66632 -10.26391 -9.85530 -8.95900 -8.63440 -8.54066 -8.20699 -7.85521 -7.71793 -6.06545 -4.16737 1.47782 1.69348 3.45496 3.53822 3.60842 3.84945 3.94905 4.28402 4.62306 5.00019 5.12915 5.23332 5.29697 5.32499 5.35118 5.53605 5.57497 5.66017 5.71722 5.79515 5.90953 6.00206 6.05925 6.12579 6.34560 6.44864 6.59656 6.65169 6.70351 6.97390 7.34558 7.42678 7.57367 7.74821 8.01053 8.36404 8.90648 9.24461 9.60037 11.04143 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.020017 B = 0.008453 C = 0.007794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.505732 B = 3311.756615 C = 3591.750153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.283 6.283 3 C 0.152 3.848 4 C -0.213 4.213 5 C -0.089 4.089 6 C -0.152 4.152 7 C -0.111 4.111 8 C 0.072 3.928 9 N -0.492 5.492 10 C 0.033 3.967 11 C 0.042 3.958 12 C 0.208 3.792 13 H 0.049 0.951 14 O -0.566 6.566 15 C -0.564 4.564 16 H 0.070 0.930 17 C 0.084 3.916 18 N -0.896 5.896 19 Si 0.868 3.132 20 H -0.290 1.290 21 H -0.297 1.297 22 H -0.212 1.212 23 H 0.097 0.903 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.126 0.874 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.124 0.876 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.021 0.979 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.350 0.650 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.944 4.890 14.668 16.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.194 6.194 3 C 0.105 3.895 4 C -0.232 4.232 5 C -0.108 4.108 6 C -0.171 4.171 7 C -0.131 4.131 8 C -0.023 4.023 9 N -0.212 5.212 10 C -0.114 4.114 11 C -0.084 4.084 12 C 0.150 3.850 13 H 0.067 0.933 14 O -0.370 6.370 15 C -0.602 4.602 16 H 0.088 0.912 17 C -0.119 4.119 18 N -0.533 5.533 19 Si 0.694 3.306 20 H -0.216 1.216 21 H -0.224 1.224 22 H -0.135 1.135 23 H 0.115 0.885 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.144 0.856 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.142 0.858 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.040 0.960 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.195 0.805 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.731 4.545 14.443 17.001 hybrid contribution 0.116 0.548 -0.377 0.675 sum -7.614 5.093 14.066 16.786 Atomic orbital electron populations 1.23033 0.79849 1.03683 1.00505 1.86368 1.19716 1.25704 1.87653 1.18973 0.91111 0.84437 0.94993 1.21151 0.99812 0.92324 1.09911 1.20850 0.94569 0.96713 0.98634 1.20856 0.93826 0.97934 1.04518 1.21475 1.00142 0.92298 0.99177 1.18146 0.90188 0.89484 1.04438 1.59626 1.25466 1.33347 1.02797 1.22399 0.96567 1.00242 0.92172 1.23034 0.94928 1.00257 0.90148 1.19580 0.92948 0.82278 0.90168 0.93293 1.86708 1.37204 1.17482 1.95651 1.21545 0.98343 1.49519 0.90757 0.91182 1.24954 0.98626 0.93077 0.95291 1.69964 1.36731 1.47981 0.98636 0.87064 0.85168 0.78884 0.79458 1.21639 1.22382 1.13454 0.88468 0.93375 0.93055 0.85580 0.86159 0.86236 0.85776 0.92012 0.91267 0.96005 0.94337 0.91123 0.80478 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 101.05 0.99 1.31 16 2 O -0.28 -5.11 10.24 -19.80 -0.20 -5.31 16 3 C 0.15 2.69 6.70 -39.09 -0.26 2.43 16 4 C -0.21 -3.13 9.04 -39.47 -0.36 -3.49 16 5 C -0.09 -1.21 10.04 -39.56 -0.40 -1.60 16 6 C -0.15 -2.15 10.04 -39.58 -0.40 -2.55 16 7 C -0.11 -1.79 8.32 -39.41 -0.33 -2.12 16 8 C 0.07 1.32 4.02 -83.56 -0.34 0.98 16 9 N -0.49 -9.19 4.38 -178.78 -0.78 -9.97 16 10 C 0.03 0.50 9.47 60.06 0.57 1.07 16 11 C 0.04 0.87 4.49 -3.82 -0.02 0.86 16 12 C 0.21 5.16 2.39 -27.88 -0.07 5.09 16 13 H 0.05 1.32 7.02 -51.93 -0.36 0.96 16 14 O -0.57 -13.75 10.10 -35.23 -0.36 -14.11 16 15 C -0.56 -16.14 9.34 -34.44 -0.32 -16.46 16 16 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 17 C 0.08 2.51 5.47 -17.82 -0.10 2.41 16 18 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 19 Si 0.87 22.77 26.99 -169.99 -4.59 18.18 16 20 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 21 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 22 H -0.21 -5.51 5.31 56.52 0.30 -5.21 16 23 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 25 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 26 H 0.13 1.52 6.30 -52.49 -0.33 1.19 16 27 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 29 H 0.12 1.87 7.05 -52.48 -0.37 1.50 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.96 7.86 -51.93 -0.41 0.55 16 32 H 0.02 0.30 7.21 -51.93 -0.37 -0.08 16 33 H 0.04 0.80 6.71 -51.93 -0.35 0.45 16 34 H 0.07 1.39 7.76 -51.92 -0.40 0.99 16 35 H 0.35 7.55 9.04 45.56 0.41 7.97 16 36 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 297.28 15.07 4.48 4.48 Total: -1.00 -33.89 297.28 -6.03 -39.91 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -4.33 Total: 6.08 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -1.02 Total: -12.08 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: -0.01 Total: -37.16 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.56 Total: -19.42 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.59 Total: 18.18 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.89 -6.03 -39.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929297740.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.691 kcal (2) G-P(sol) polarization free energy of solvation -33.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds