Wall clock time and date at job start Mon Mar 30 2020 04:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47204 * 2 1 4 4 N 1.46905 * 109.47034 * 119.99822 * 2 1 3 5 5 C 1.50698 * 109.47049 * 239.99464 * 2 1 3 6 6 C 1.40884 * 126.29560 * 279.69000 * 5 2 1 7 7 C 1.34855 * 107.41958 * 179.83087 * 6 5 2 8 8 N 1.36340 * 108.21741 * 0.43379 * 7 6 5 9 9 C 1.46501 * 125.63877 * 179.69165 * 8 7 6 10 10 C 1.50697 * 109.46962 * 270.04013 * 9 8 7 11 11 O 1.21287 * 120.00121 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00167 * 179.97438 * 10 9 8 13 13 C 1.46506 * 119.99981 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.46921 * 179.97438 * 13 12 10 15 15 H 1.08004 * 119.99918 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99886 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99697 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00076 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46943 * 89.99571 * 18 16 14 20 20 H 1.48505 * 109.47139 * 209.99847 * 18 16 14 21 21 H 1.48508 * 109.47011 * 329.99949 * 18 16 14 22 22 C 1.34855 * 126.28675 * 100.00186 * 5 2 1 23 23 H 1.09002 * 109.46981 * 300.00232 * 1 2 3 24 24 H 1.08999 * 109.46856 * 60.00151 * 1 2 3 25 25 H 1.09001 * 109.47204 * 179.97438 * 1 2 3 26 26 H 1.00901 * 110.99869 * 60.00199 * 4 2 1 27 27 H 1.00896 * 110.99543 * 183.95322 * 4 2 1 28 28 H 1.07999 * 126.29234 * 359.96676 * 6 5 2 29 29 H 1.07999 * 125.89127 * 180.15428 * 7 6 5 30 30 H 1.08999 * 109.47116 * 30.03494 * 9 8 7 31 31 H 1.08999 * 109.47428 * 150.04025 * 9 8 7 32 32 H 0.96994 * 119.99804 * 359.97438 * 12 10 9 33 33 H 1.08999 * 109.46764 * 299.99646 * 13 12 10 34 34 H 1.08992 * 109.47586 * 59.99672 * 13 12 10 35 35 H 0.97001 * 119.99700 * 179.97438 * 17 16 14 36 36 H 1.07999 * 125.89412 * 359.97438 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0323 -0.7105 -1.2304 6 6 2.1301 -2.1048 -1.4067 7 6 2.6211 -2.3219 -2.6438 8 7 2.8392 -1.1124 -3.2341 9 6 3.3754 -0.9044 -4.5815 10 6 4.8782 -0.8142 -4.5156 11 8 5.4455 -0.9134 -3.4482 12 7 5.5919 -0.6233 -5.6428 13 6 7.0530 -0.5362 -5.5788 14 6 7.6047 -0.3234 -6.9650 15 1 6.9341 -0.2598 -7.8092 16 6 8.9655 -0.2098 -7.1554 17 7 9.4469 -0.0246 -8.3651 18 14 10.1254 -0.3204 -5.6953 19 1 10.5235 -1.7356 -5.4856 20 1 11.3345 0.4999 -5.9604 21 1 9.4400 0.1864 -4.4792 22 6 2.4763 -0.1283 -2.3628 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6961 -1.6479 1.2228 27 1 3.0261 -0.6500 1.2559 28 1 1.8593 -2.8610 -0.6847 29 1 2.8131 -3.2872 -3.0884 30 1 3.0892 -1.7406 -5.2195 31 1 2.9736 0.0212 -4.9936 32 1 5.1383 -0.5444 -6.4965 33 1 7.3394 0.3000 -4.9410 34 1 7.4545 -1.4618 -5.1665 35 1 10.4043 0.0557 -8.4991 36 1 2.5342 0.9341 -2.5480 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085836778.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:27 Heat of formation + Delta-G solvation = -16.311745 kcal Electronic energy + Delta-G solvation = -17753.265200 eV Core-core repulsion = 14850.996038 eV Total energy + Delta-G solvation = -2902.269161 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.27434 -40.39239 -36.91907 -36.22561 -34.50185 -33.31848 -30.34370 -30.20087 -29.12805 -27.65337 -24.22921 -23.30834 -21.93844 -21.03709 -20.18192 -19.37213 -18.26150 -17.91305 -16.93744 -16.66071 -16.55754 -16.04481 -15.36425 -15.09233 -14.97567 -14.66321 -14.41587 -14.29584 -14.01016 -13.67415 -13.19291 -13.10876 -13.00298 -12.76209 -12.72624 -12.55135 -11.98960 -11.83894 -11.70466 -11.10521 -10.96314 -10.04829 -9.79233 -9.34042 -8.94738 -8.44180 -6.51323 1.23780 1.28691 1.32419 1.43079 1.54048 1.93598 2.07624 2.23665 2.51793 2.91352 3.76733 3.81286 3.84916 4.14182 4.17766 4.24224 4.30425 4.51779 4.63669 4.70833 4.73464 4.95671 5.01596 5.10047 5.20599 5.29048 5.38219 5.40318 5.51299 6.02104 6.08162 6.24561 6.36571 6.44806 6.50403 6.62770 6.73730 7.10186 7.28942 8.70349 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.042148 B = 0.003943 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.159601 B = 7100.358339 C = 7415.272282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.160 3.840 3 H 0.074 0.926 4 N -0.839 5.839 5 C -0.210 4.210 6 C -0.208 4.208 7 C -0.016 4.016 8 N -0.435 5.435 9 C 0.095 3.905 10 C 0.481 3.519 11 O -0.588 6.588 12 N -0.698 5.698 13 C 0.233 3.767 14 C -0.547 4.547 15 H 0.064 0.936 16 C 0.028 3.972 17 N -0.929 5.929 18 Si 0.935 3.065 19 H -0.266 1.266 20 H -0.273 1.273 21 H -0.264 1.264 22 C -0.015 4.015 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.342 0.658 27 H 0.340 0.660 28 H 0.142 0.858 29 H 0.172 0.828 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.413 0.587 33 H 0.010 0.990 34 H 0.009 0.991 35 H 0.273 0.727 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.859 -2.129 11.074 21.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.092 0.908 4 N -0.367 5.367 5 C -0.218 4.218 6 C -0.232 4.232 7 C -0.145 4.145 8 N -0.110 5.110 9 C -0.030 4.030 10 C 0.267 3.733 11 O -0.468 6.468 12 N -0.349 5.349 13 C 0.109 3.891 14 C -0.584 4.584 15 H 0.082 0.918 16 C -0.172 4.172 17 N -0.568 5.568 18 Si 0.759 3.241 19 H -0.191 1.191 20 H -0.198 1.198 21 H -0.188 1.188 22 C -0.145 4.145 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.155 0.845 27 H 0.152 0.848 28 H 0.160 0.840 29 H 0.189 0.811 30 H 0.169 0.831 31 H 0.168 0.832 32 H 0.250 0.750 33 H 0.028 0.972 34 H 0.027 0.973 35 H 0.082 0.918 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -17.573 -1.567 11.777 21.213 hybrid contribution 1.502 -0.653 -0.949 1.893 sum -16.071 -2.220 10.828 19.505 Atomic orbital electron populations 1.21687 0.93329 1.01894 1.01733 1.19754 0.95466 0.96248 0.83789 0.90772 1.59151 1.16401 1.21713 1.39426 1.20612 1.09123 0.94412 0.97658 1.20805 1.09648 0.95667 0.97120 1.22129 1.07123 0.89589 0.95682 1.43664 1.48112 1.06443 1.12758 1.21866 0.88390 1.09126 0.83628 1.21672 0.91428 0.76477 0.83743 1.90714 1.73408 1.52056 1.30650 1.45958 1.07806 1.71233 1.09912 1.19079 0.78374 0.95452 0.96176 1.21278 0.93227 1.51425 0.92516 0.91803 1.25563 0.99772 0.93677 0.98233 1.69969 1.14471 1.49626 1.22694 0.85904 0.78963 0.79254 0.80025 1.19062 1.19755 1.18816 1.21936 1.06740 0.94462 0.91354 0.91922 0.92072 0.92931 0.84506 0.84848 0.84039 0.81061 0.83061 0.83196 0.75012 0.97170 0.97259 0.91785 0.81558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.47 71.98 0.68 -1.56 16 2 C 0.16 3.30 3.81 44.17 0.17 3.46 16 3 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 4 N -0.84 -16.68 9.14 -171.80 -1.57 -18.25 16 5 C -0.21 -5.03 5.11 -19.99 -0.10 -5.13 16 6 C -0.21 -4.97 10.24 22.14 0.23 -4.74 16 7 C -0.02 -0.39 11.43 83.21 0.95 0.56 16 8 N -0.43 -10.82 2.24 -528.55 -1.18 -12.00 16 9 C 0.10 1.99 6.57 85.63 0.56 2.55 16 10 C 0.48 16.14 7.90 87.66 0.69 16.83 16 11 O -0.59 -25.85 16.43 -3.05 -0.05 -25.90 16 12 N -0.70 -25.23 5.55 -466.78 -2.59 -27.82 16 13 C 0.23 10.99 4.50 85.63 0.38 11.38 16 14 C -0.55 -29.12 9.83 25.60 0.25 -28.86 16 15 H 0.06 3.53 7.84 -2.91 -0.02 3.51 16 16 C 0.03 1.56 5.47 84.65 0.46 2.03 16 17 N -0.93 -54.39 13.96 21.45 0.30 -54.09 16 18 Si 0.93 43.47 27.47 68.60 1.88 45.35 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.26 -12.27 6.54 99.48 0.65 -11.62 16 22 C -0.01 -0.37 11.35 83.21 0.94 0.57 16 23 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.34 6.13 8.24 -89.69 -0.74 5.39 16 27 H 0.34 7.02 9.06 -89.70 -0.81 6.21 16 28 H 0.14 2.86 7.72 -2.91 -0.02 2.84 16 29 H 0.17 3.50 8.06 -2.91 -0.02 3.47 16 30 H 0.15 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.15 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.41 12.31 8.32 -92.71 -0.77 11.53 16 33 H 0.01 0.52 7.20 -2.39 -0.02 0.51 16 34 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 35 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 36 H 0.17 3.62 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -70.37 310.43 0.74 -69.62 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: -1.27 Total: 25.99 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 5.22 Total: -2.91 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -5.04 Total: -112.16 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.05 Total: -25.90 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.88 Total: 45.35 kcal Total: -70.37 0.74 -69.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085836778.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.311 kcal (2) G-P(sol) polarization free energy of solvation -70.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds