Wall clock time and date at job start Mon Mar 30 2020 04:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46782 * 2 1 4 4 N 1.28438 * 125.19086 * 85.53101 * 3 2 1 5 5 C 1.30867 * 110.92713 * 179.97438 * 4 3 2 6 6 C 1.50698 * 126.06947 * 179.97438 * 5 4 3 7 7 C 1.39669 * 107.86258 * 359.97438 * 5 4 3 8 8 C 1.36597 * 125.18714 * 265.47826 * 3 2 1 9 9 C 1.47162 * 126.88523 * 0.02562 * 8 3 2 10 10 O 1.21625 * 120.00146 * 343.53400 * 9 8 3 11 11 N 1.34775 * 119.99903 * 163.53294 * 9 8 3 12 12 C 1.46502 * 120.00250 * 359.87262 * 11 9 8 13 13 C 1.46500 * 120.00059 * 179.87123 * 11 9 8 14 14 C 1.50702 * 109.47282 * 90.00267 * 13 11 9 15 15 H 1.08000 * 119.99651 * 359.97438 * 14 13 11 16 16 C 1.37872 * 120.00294 * 180.02562 * 14 13 11 17 17 N 1.31508 * 120.00099 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 119.99971 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.47061 * 89.99615 * 18 16 14 20 20 H 1.48494 * 109.47144 * 210.00344 * 18 16 14 21 21 H 1.48507 * 109.46637 * 330.00004 * 18 16 14 22 22 H 1.08999 * 109.47319 * 184.98545 * 1 2 3 23 23 H 1.09002 * 109.47519 * 304.99032 * 1 2 3 24 24 H 1.08997 * 109.46968 * 64.99113 * 1 2 3 25 25 H 1.09000 * 109.47109 * 239.99617 * 2 1 3 26 26 H 1.09004 * 109.46994 * 119.99507 * 2 1 3 27 27 H 1.09004 * 109.47476 * 90.01883 * 6 5 4 28 28 H 1.09001 * 109.47407 * 210.02180 * 6 5 4 29 29 H 1.09000 * 109.47162 * 330.02409 * 6 5 4 30 30 H 1.08003 * 127.32489 * 180.02562 * 7 5 4 31 31 H 1.09001 * 109.47024 * 83.28222 * 12 11 9 32 32 H 1.09002 * 109.47522 * 203.28747 * 12 11 9 33 33 H 1.09004 * 109.47028 * 323.28955 * 12 11 9 34 34 H 1.09003 * 109.47143 * 209.99860 * 13 11 9 35 35 H 1.09001 * 109.47345 * 329.99885 * 13 11 9 36 36 H 0.97002 * 120.00093 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.1878 2.1064 1.0464 5 6 2.6347 3.2936 0.7250 6 6 2.9503 4.4124 1.6840 7 6 2.7673 3.3398 -0.6646 8 6 2.3636 2.0941 -1.1129 9 6 2.3162 1.6304 -2.5087 10 8 2.2335 0.4416 -2.7522 11 7 2.3643 2.5230 -3.5174 12 6 2.4611 3.9551 -3.2242 13 6 2.3200 2.0612 -4.9070 14 6 0.8871 1.9957 -5.3691 15 1 0.0893 2.2702 -4.6950 16 6 0.5946 1.5844 -6.6522 17 7 -0.6558 1.5268 -7.0553 18 14 1.9747 1.1090 -7.8180 19 1 2.2585 -0.3423 -7.6833 20 1 1.5672 1.4063 -9.2147 21 1 3.1954 1.8853 -7.4826 22 1 -0.3634 -1.0238 0.0893 23 1 -0.3634 0.5893 0.8419 24 1 -0.3633 0.4344 -0.9313 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.9924 4.3408 1.9958 28 1 2.7834 5.3707 1.1920 29 1 2.3035 4.3352 2.5580 30 1 3.1117 4.1708 -1.2623 31 1 3.5031 4.2195 -3.0440 32 1 2.0827 4.5260 -4.0721 33 1 1.8695 4.1853 -2.3381 34 1 2.8740 2.7558 -5.5385 35 1 2.7695 1.0705 -4.9752 36 1 -0.8616 1.2378 -7.9581 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112010065.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:22 Heat of formation + Delta-G solvation = 29.501908 kcal Electronic energy + Delta-G solvation = -18778.600746 eV Core-core repulsion = 15878.318214 eV Total energy + Delta-G solvation = -2900.282532 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.59641 -40.44498 -37.03788 -35.68518 -34.77624 -32.47060 -32.19146 -30.03193 -28.39293 -27.78702 -25.32779 -24.20764 -22.97531 -21.76992 -19.82015 -19.16408 -18.08775 -17.67496 -17.01481 -16.91382 -16.18696 -15.76892 -15.62145 -14.95314 -14.82164 -14.44292 -14.12136 -13.89491 -13.86589 -13.63311 -13.25952 -13.22460 -13.05394 -12.99877 -12.60966 -12.43340 -12.34656 -12.05829 -11.76413 -11.49923 -10.95567 -10.83799 -10.11965 -9.82476 -9.49290 -8.34879 -6.41285 0.27911 1.32328 1.36801 1.38254 1.46934 1.60927 2.12666 2.30320 2.31500 2.99540 3.43004 3.49767 3.93918 3.98008 4.14091 4.24455 4.34138 4.39592 4.57233 4.61945 4.69292 4.74905 4.76110 4.89237 4.93740 4.96516 5.01742 5.08990 5.18530 5.41333 5.49440 5.61845 5.82136 6.19548 6.46946 6.60000 7.05235 7.14247 7.25916 8.82134 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.028519 B = 0.006205 C = 0.005569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.562691 B = 4511.458954 C = 5026.299234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.104 3.896 3 N -0.267 5.267 4 N -0.297 5.297 5 C 0.013 3.987 6 C -0.061 4.061 7 C -0.190 4.190 8 C -0.051 4.051 9 C 0.571 3.429 10 O -0.584 6.584 11 N -0.585 5.585 12 C 0.061 3.939 13 C 0.225 3.775 14 C -0.539 4.539 15 H 0.025 0.975 16 C 0.013 3.987 17 N -0.945 5.945 18 Si 0.949 3.051 19 H -0.276 1.276 20 H -0.275 1.275 21 H -0.234 1.234 22 H 0.105 0.895 23 H 0.068 0.932 24 H 0.030 0.970 25 H 0.101 0.899 26 H 0.121 0.879 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.201 0.799 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.025 0.975 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.419 5.991 14.793 18.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.015 4.015 3 N -0.055 5.055 4 N -0.131 5.131 5 C -0.143 4.143 6 C -0.119 4.119 7 C -0.218 4.218 8 C -0.179 4.179 9 C 0.359 3.641 10 O -0.466 6.466 11 N -0.314 5.314 12 C -0.080 4.080 13 C 0.103 3.897 14 C -0.577 4.577 15 H 0.044 0.956 16 C -0.185 4.185 17 N -0.585 5.585 18 Si 0.771 3.229 19 H -0.201 1.201 20 H -0.200 1.200 21 H -0.157 1.157 22 H 0.123 0.877 23 H 0.087 0.913 24 H 0.049 0.951 25 H 0.119 0.881 26 H 0.139 0.861 27 H 0.105 0.895 28 H 0.117 0.883 29 H 0.091 0.909 30 H 0.218 0.782 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.043 0.957 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.902 4.550 15.394 18.355 hybrid contribution -0.106 -0.231 -1.608 1.628 sum 8.796 4.319 13.786 16.914 Atomic orbital electron populations 1.22033 0.93172 1.04703 1.01442 1.22324 0.96507 0.76456 1.06247 1.45893 1.45056 1.12766 1.01764 1.73035 1.20470 1.05713 1.13868 1.22769 1.02862 0.94122 0.94582 1.20225 1.02783 0.92766 0.96138 1.23093 1.06694 0.96675 0.95383 1.21470 1.11852 0.95458 0.89124 1.17361 0.77164 0.85543 0.84078 1.90680 1.53064 1.17663 1.85164 1.47611 1.69669 1.08100 1.06058 1.22595 1.03198 0.78726 1.03499 1.19487 0.95660 0.96118 0.78393 1.21496 0.92324 1.45747 0.98173 0.95637 1.25849 0.98384 0.94390 0.99880 1.70049 1.20321 1.48714 1.19409 0.85701 0.79984 0.79388 0.77803 1.20139 1.20050 1.15676 0.87654 0.91314 0.95057 0.88068 0.86053 0.89466 0.88272 0.90850 0.78245 0.88848 0.90374 0.89454 0.92070 0.95702 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.40 10.24 71.98 0.74 -3.66 16 2 C 0.10 3.13 6.80 86.38 0.59 3.71 16 3 N -0.27 -8.98 3.35 -334.68 -1.12 -10.10 16 4 N -0.30 -9.12 11.90 -47.50 -0.57 -9.68 16 5 C 0.01 0.34 7.22 43.05 0.31 0.65 16 6 C -0.06 -0.94 10.45 71.24 0.74 -0.19 16 7 C -0.19 -5.17 8.70 22.66 0.20 -4.97 16 8 C -0.05 -1.81 6.68 40.79 0.27 -1.54 16 9 C 0.57 24.69 7.62 86.59 0.66 25.35 16 10 O -0.58 -29.37 14.27 -4.11 -0.06 -29.43 16 11 N -0.58 -24.18 2.86 -855.34 -2.44 -26.62 16 12 C 0.06 1.76 8.74 127.77 1.12 2.88 16 13 C 0.23 10.79 4.20 85.63 0.36 11.15 16 14 C -0.54 -31.51 9.94 25.60 0.25 -31.26 16 15 H 0.03 1.69 8.06 -2.91 -0.02 1.66 16 16 C 0.01 0.77 5.47 84.65 0.46 1.23 16 17 N -0.95 -59.42 13.96 21.44 0.30 -59.12 16 18 Si 0.95 43.49 27.47 68.60 1.88 45.38 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 21 H -0.23 -9.46 6.54 99.48 0.65 -8.81 16 22 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 23 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.10 3.53 5.91 -2.39 -0.01 3.51 16 26 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 27 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.20 3.99 4.95 -2.91 -0.01 3.98 16 31 H 0.09 1.94 7.35 -2.39 -0.02 1.92 16 32 H 0.08 2.28 8.02 -2.39 -0.02 2.26 16 33 H 0.09 2.31 5.36 -2.39 -0.01 2.29 16 34 H 0.06 2.62 7.13 -2.39 -0.02 2.60 16 35 H 0.02 1.27 6.85 -2.39 -0.02 1.25 16 36 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -77.55 299.54 4.72 -72.83 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 1.02 Total: 13.38 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 5.70 Total: 3.36 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -3.83 Total: -105.52 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.06 Total: -29.43 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.88 Total: 45.38 kcal Total: -77.55 4.72 -72.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112010065.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.333 kcal (2) G-P(sol) polarization free energy of solvation -77.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds