Wall clock time and date at job start Mon Mar 30 2020 04:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47225 * 2 1 4 4 C 1.52998 * 109.46835 * 119.99899 * 2 1 3 5 5 H 1.09005 * 109.47343 * 180.19998 * 4 2 1 6 6 C 1.50699 * 109.47549 * 60.20138 * 4 2 1 7 7 H 1.07994 * 119.99925 * 246.39579 * 6 4 2 8 8 C 1.37878 * 119.99962 * 66.39048 * 6 4 2 9 9 N 1.31520 * 119.99854 * 11.49832 * 8 6 4 10 10 Si 1.86800 * 120.00127 * 191.49960 * 8 6 4 11 11 H 1.48494 * 109.47172 * 180.02562 * 10 8 6 12 12 H 1.48499 * 109.46775 * 300.00192 * 10 8 6 13 13 H 1.48500 * 109.47120 * 60.00113 * 10 8 6 14 14 C 1.53004 * 109.46949 * 300.19946 * 4 2 1 15 15 N 1.46501 * 109.47274 * 293.21906 * 14 4 2 16 16 C 1.34772 * 119.99681 * 174.77612 * 15 14 4 17 17 O 1.21568 * 120.00813 * 0.02562 * 16 15 14 18 18 C 1.47713 * 119.99793 * 180.02562 * 16 15 14 19 19 C 1.41499 * 126.51828 * 179.70948 * 18 16 15 20 20 C 1.35375 * 105.50252 * 179.84482 * 19 18 16 21 21 N 1.35036 * 107.22672 * 0.41647 * 20 19 18 22 22 H 0.96995 * 124.88366 * 179.72288 * 21 20 19 23 23 N 1.28466 * 110.23163 * 359.72826 * 21 20 19 24 24 H 1.09004 * 109.47607 * 308.48308 * 1 2 3 25 25 H 1.09006 * 109.46823 * 68.47827 * 1 2 3 26 26 H 1.09002 * 109.47671 * 188.47847 * 1 2 3 27 27 H 1.09002 * 109.47091 * 239.99528 * 2 1 3 28 28 H 1.08998 * 109.46783 * 174.27560 * 3 2 1 29 29 H 1.08999 * 109.46706 * 294.27407 * 3 2 1 30 30 H 1.09001 * 109.46959 * 54.27388 * 3 2 1 31 31 H 0.96991 * 119.99604 * 357.42795 * 9 8 6 32 32 H 1.08990 * 109.47361 * 53.22457 * 14 4 2 33 33 H 1.09003 * 109.46567 * 173.22530 * 14 4 2 34 34 H 0.96994 * 119.99620 * 354.78110 * 15 14 4 35 35 H 1.07993 * 127.24797 * 0.02562 * 19 18 16 36 36 H 1.08000 * 126.38330 * 180.14431 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1299 -0.7182 1.2511 6 6 1.5416 -2.1435 1.2469 7 1 0.8381 -2.4704 1.9982 8 6 1.9839 -3.0272 0.2854 9 7 2.9999 -2.7060 -0.4855 10 14 1.1401 -4.6808 0.0778 11 1 1.8006 -5.4399 -1.0143 12 1 1.2390 -5.4495 1.3444 13 1 -0.2898 -4.4677 -0.2615 14 6 1.5257 -0.0028 2.4985 15 7 2.1387 1.3249 2.5854 16 6 1.7542 2.1828 3.5511 17 8 0.8989 1.8548 4.3503 18 6 2.3718 3.5217 3.6383 19 6 2.0706 4.5278 4.5867 20 6 2.8805 5.5683 4.2799 21 7 3.6120 5.2024 3.2054 22 1 4.2745 5.7607 2.7692 23 7 3.3043 4.0087 2.8440 24 1 -0.3634 0.6395 0.8044 25 1 -0.3633 0.3770 -0.9561 26 1 -0.3634 -1.0164 0.1515 27 1 1.8933 -0.5139 -0.8900 28 1 3.1251 1.4442 0.1025 29 1 1.7628 1.9258 -0.9368 30 1 1.5954 1.9851 0.8343 31 1 3.4142 -1.8329 -0.4030 32 1 0.4424 0.1004 2.4382 33 1 1.7869 -0.5822 3.3841 34 1 2.8213 1.5866 1.9478 35 1 1.3490 4.4754 5.3884 36 1 2.9289 6.5161 4.7954 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260142356.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:26 Heat of formation + Delta-G solvation = 31.722675 kcal Electronic energy + Delta-G solvation = -18714.935390 eV Core-core repulsion = 15814.749157 eV Total energy + Delta-G solvation = -2900.186233 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.65458 -39.17294 -36.90358 -33.46144 -32.02754 -31.77894 -30.77704 -28.66050 -26.37393 -24.95126 -23.27446 -22.04924 -21.60203 -19.82588 -18.93431 -18.47079 -17.12637 -16.00350 -15.79244 -15.30870 -14.97229 -13.89036 -13.75077 -13.70355 -13.50118 -13.16539 -13.13443 -12.61683 -12.00303 -11.62300 -11.36522 -11.28370 -11.00242 -10.76377 -10.47032 -10.08650 -9.98871 -9.82491 -9.69543 -9.48055 -9.29560 -9.25475 -8.58217 -8.22852 -8.18625 -6.35967 -4.04368 1.64501 2.10290 2.78276 3.45986 3.47424 3.65600 3.70702 3.71984 4.52476 4.58090 4.73674 5.28706 5.35596 5.57676 5.69274 5.85144 5.93019 6.07494 6.26107 6.32502 6.34691 6.43391 6.61051 6.68723 6.71180 6.76858 6.84628 6.93706 7.24991 7.30490 7.53000 7.55111 7.71437 8.09239 8.20559 8.45351 8.65048 8.87280 9.64646 11.02581 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.039847 B = 0.005169 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.514881 B = 5415.538404 C = 5640.037895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 C -0.165 4.165 4 C 0.030 3.970 5 H 0.025 0.975 6 C -0.592 4.592 7 H 0.052 0.948 8 C 0.026 3.974 9 N -0.907 5.907 10 Si 1.063 2.937 11 H -0.284 1.284 12 H -0.288 1.288 13 H -0.287 1.287 14 C 0.128 3.872 15 N -0.706 5.706 16 C 0.587 3.413 17 O -0.543 6.543 18 C -0.006 4.006 19 C -0.182 4.182 20 C -0.021 4.021 21 N -0.387 5.387 22 H 0.445 0.555 23 N -0.260 5.260 24 H 0.037 0.963 25 H 0.027 0.973 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.037 0.963 30 H 0.063 0.937 31 H 0.271 0.729 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.408 0.592 35 H 0.162 0.838 36 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.172 16.152 5.197 17.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.112 4.112 3 C -0.222 4.222 4 C 0.011 3.989 5 H 0.043 0.957 6 C -0.630 4.630 7 H 0.071 0.929 8 C -0.179 4.179 9 N -0.542 5.542 10 Si 0.891 3.109 11 H -0.209 1.209 12 H -0.215 1.215 13 H -0.213 1.213 14 C 0.006 3.994 15 N -0.360 5.360 16 C 0.370 3.630 17 O -0.420 6.420 18 C -0.167 4.167 19 C -0.210 4.210 20 C -0.165 4.165 21 N -0.100 5.100 22 H 0.289 0.711 23 N -0.096 5.096 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.247 0.753 35 H 0.180 0.820 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 1.232 14.153 3.986 14.755 hybrid contribution 0.201 2.250 1.036 2.485 sum 1.433 16.403 5.022 17.214 Atomic orbital electron populations 1.21721 0.96390 1.02224 0.98424 1.21224 0.95451 0.93088 1.01485 1.22408 0.99916 0.98947 1.00925 1.19098 0.96048 0.94857 0.88860 0.95719 1.21707 1.30158 0.94690 1.16444 0.92947 1.25697 0.95063 1.03791 0.93340 1.70805 1.19116 1.23520 1.40791 0.83624 0.75702 0.75219 0.76315 1.20932 1.21486 1.21344 1.21728 0.97762 0.79718 1.00141 1.46841 1.41709 1.16478 1.30983 1.16998 0.82133 0.82244 0.81616 1.90761 1.32564 1.76928 1.41725 1.22267 0.99390 0.97556 0.97534 1.21830 1.03831 0.92395 1.02931 1.22919 0.97766 1.01985 0.93829 1.43367 1.31808 1.11368 1.23505 0.71136 1.73598 1.16090 0.96072 1.23887 0.94382 0.95343 0.91216 0.91222 0.93695 0.94384 0.91800 0.91814 0.91530 0.92488 0.75264 0.82043 0.79948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 8.50 37.16 0.32 -2.41 16 2 C -0.09 -2.05 2.48 -90.62 -0.23 -2.28 16 3 C -0.16 -3.05 7.54 37.16 0.28 -2.77 16 4 C 0.03 0.72 1.47 -91.77 -0.14 0.59 16 5 H 0.02 0.63 7.37 -51.93 -0.38 0.25 16 6 C -0.59 -15.79 7.07 -34.44 -0.24 -16.04 16 7 H 0.05 1.41 7.78 -52.49 -0.41 1.01 16 8 C 0.03 0.71 5.18 -17.82 -0.09 0.62 16 9 N -0.91 -26.22 13.09 55.43 0.73 -25.49 16 10 Si 1.06 24.66 29.92 -169.99 -5.09 19.57 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 14 C 0.13 2.80 4.73 -4.04 -0.02 2.78 16 15 N -0.71 -13.55 3.49 -61.29 -0.21 -13.76 16 16 C 0.59 11.20 7.82 -12.39 -0.10 11.10 16 17 O -0.54 -11.85 16.92 5.31 0.09 -11.76 16 18 C -0.01 -0.09 7.13 -82.76 -0.59 -0.68 16 19 C -0.18 -2.27 10.81 -39.36 -0.43 -2.70 16 20 C -0.02 -0.18 12.02 -17.16 -0.21 -0.38 16 21 N -0.39 -3.56 6.83 30.47 0.21 -3.35 16 22 H 0.44 2.25 8.96 -190.45 -1.71 0.54 16 23 N -0.26 -3.57 11.92 33.42 0.40 -3.17 16 24 H 0.04 0.76 6.72 -51.93 -0.35 0.41 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 1.58 6.95 -51.93 -0.36 1.21 16 27 H 0.07 1.71 6.66 -51.93 -0.35 1.37 16 28 H 0.04 0.80 7.47 -51.93 -0.39 0.41 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 1.17 5.48 -51.93 -0.28 0.88 16 31 H 0.27 7.77 6.19 -40.82 -0.25 7.51 16 32 H 0.07 1.50 6.27 -51.93 -0.33 1.17 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.41 7.38 5.27 -40.82 -0.22 7.17 16 35 H 0.16 1.87 8.06 -52.49 -0.42 1.44 16 36 H 0.18 0.74 8.06 -52.49 -0.42 0.31 16 LS Contribution 293.89 15.07 4.43 4.43 Total: -1.00 -32.29 293.89 -6.82 -39.11 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.93 Total: 6.60 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -1.44 Total: -12.18 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 1.12 Total: -45.78 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -5.09 Total: 19.57 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.29 -6.82 -39.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260142356.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.832 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds