Wall clock time and date at job start Mon Mar 30 2020 03:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35317 * 117.00327 * 2 1 4 4 N 1.32623 * 120.64678 * 0.24344 * 3 2 1 5 5 C 1.31933 * 121.21057 * 180.24566 * 4 3 2 6 6 C 1.50701 * 118.71105 * 179.74292 * 5 4 3 7 7 C 1.53005 * 109.46813 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47231 * 300.02057 * 6 5 4 9 9 C 1.52997 * 109.47329 * 60.02349 * 6 5 4 10 10 N 1.31865 * 122.57907 * 359.76736 * 5 4 3 11 11 C 1.32823 * 121.11932 * 359.97438 * 10 5 4 12 12 N 1.37885 * 120.68260 * 179.97438 * 11 10 5 13 13 C 1.41633 * 120.64526 * 179.97438 * 3 2 1 14 14 C 1.40903 * 121.12918 * 0.02562 * 13 3 2 15 15 H 1.07991 * 120.00126 * 222.69858 * 14 13 3 16 16 C 1.39927 * 119.99649 * 42.70038 * 14 13 3 17 17 N 1.30926 * 119.99689 * 199.81056 * 16 14 13 18 18 Si 1.86802 * 120.00253 * 20.08606 * 16 14 13 19 19 H 1.48498 * 109.47063 * 267.53772 * 18 16 14 20 20 H 1.48501 * 109.46905 * 27.53860 * 18 16 14 21 21 H 1.48496 * 109.47270 * 147.53753 * 18 16 14 22 22 H 1.09003 * 109.47285 * 299.99929 * 1 2 3 23 23 H 1.09002 * 109.47227 * 59.99809 * 1 2 3 24 24 H 1.08999 * 109.47585 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47087 * 60.00319 * 7 6 5 26 26 H 1.08998 * 109.46626 * 180.02562 * 7 6 5 27 27 H 1.08999 * 109.47211 * 299.99701 * 7 6 5 28 28 H 1.09000 * 109.46817 * 60.00243 * 8 6 5 29 29 H 1.09000 * 109.46842 * 180.02562 * 8 6 5 30 30 H 1.09003 * 109.46855 * 300.00118 * 8 6 5 31 31 H 1.09002 * 109.46970 * 59.99554 * 9 6 5 32 32 H 1.08998 * 109.47583 * 180.02562 * 9 6 5 33 33 H 1.09000 * 109.47131 * 300.00009 * 9 6 5 34 34 H 0.96995 * 120.00341 * 182.00357 * 12 11 10 35 35 H 0.97007 * 119.99662 * 2.01501 * 12 11 10 36 36 H 0.97001 * 119.99876 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0433 1.2056 0.0000 4 7 1.3337 2.3260 0.0048 5 6 1.9211 3.5074 0.0001 6 6 1.0600 4.7441 0.0001 7 6 1.9524 5.9869 -0.0065 8 6 0.1720 4.7473 -1.2459 9 6 0.1813 4.7538 1.2525 10 7 3.2322 3.6484 -0.0052 11 6 4.0363 2.5913 -0.0054 12 7 5.4061 2.7492 -0.0115 13 6 3.4568 1.2956 0.0005 14 6 4.2604 0.1382 0.0006 15 1 5.1327 0.0865 0.6351 16 6 3.9281 -0.9442 -0.8217 17 7 4.4072 -2.1347 -0.5621 18 14 2.8071 -0.6891 -2.2940 19 1 1.4001 -0.9472 -1.8955 20 1 2.9361 0.7089 -2.7780 21 1 3.1941 -1.6262 -3.3790 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 2.5783 5.9800 -0.8989 26 1 1.3295 6.8814 -0.0061 27 1 2.5850 5.9847 0.8811 28 1 -0.4637 3.8619 -1.2412 29 1 -0.4505 5.6421 -1.2461 30 1 0.7981 4.7405 -2.1382 31 1 0.8139 4.7515 2.1402 32 1 -0.4419 5.6480 1.2523 33 1 -0.4544 3.8684 1.2572 34 1 5.9840 1.9708 -0.0409 35 1 5.7918 3.6389 0.0139 36 1 4.1765 -2.8851 -1.1319 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260665093.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:43 Heat of formation + Delta-G solvation = -3.605935 kcal Electronic energy + Delta-G solvation = -19459.453527 eV Core-core repulsion = 16557.735331 eV Total energy + Delta-G solvation = -2901.718196 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.87483 -37.58163 -36.19370 -33.78704 -33.28683 -30.92257 -29.79396 -26.82291 -26.78858 -26.46650 -25.31350 -22.23735 -21.52280 -19.20303 -17.90927 -17.15778 -16.76430 -15.60927 -15.26338 -14.60313 -14.43186 -14.02775 -13.97780 -13.39465 -13.16534 -12.84382 -12.70777 -12.33896 -11.87367 -11.72396 -11.28860 -11.21637 -11.13774 -11.00060 -10.76397 -10.69169 -10.52990 -10.36710 -10.08084 -9.80617 -9.26030 -8.90560 -8.12133 -7.96626 -7.13526 -6.76702 -4.27199 2.36472 2.72981 3.16629 3.29658 3.35399 4.10273 4.22129 4.64795 4.67109 4.95890 5.22880 5.39071 5.60669 5.65639 5.86034 5.93522 5.97697 6.00766 6.08360 6.21771 6.25138 6.27666 6.29673 6.34960 6.42437 6.54914 6.77817 6.80619 6.91783 7.23113 7.33809 7.89110 8.09430 8.31355 8.45578 8.61178 8.85746 8.95572 9.63560 10.24496 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.024774 B = 0.009551 C = 0.007932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.950623 B = 2930.963485 C = 3529.210822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.287 6.287 3 C 0.247 3.753 4 N -0.572 5.572 5 C 0.275 3.725 6 C 0.018 3.982 7 C -0.118 4.118 8 C -0.130 4.130 9 C -0.129 4.129 10 N -0.571 5.571 11 C 0.369 3.631 12 N -0.840 5.840 13 C -0.054 4.054 14 C -0.451 4.451 15 H 0.089 0.911 16 C 0.104 3.896 17 N -0.816 5.816 18 Si 0.907 3.093 19 H -0.248 1.248 20 H -0.269 1.269 21 H -0.294 1.294 22 H 0.049 0.951 23 H 0.044 0.956 24 H 0.079 0.921 25 H 0.056 0.944 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.409 0.591 35 H 0.390 0.610 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.208 8.319 -0.549 9.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.194 6.194 3 C 0.064 3.936 4 N -0.303 5.303 5 C 0.008 3.992 6 C 0.015 3.985 7 C -0.176 4.176 8 C -0.188 4.188 9 C -0.187 4.187 10 N -0.297 5.297 11 C 0.124 3.876 12 N -0.387 5.387 13 C -0.064 4.064 14 C -0.483 4.483 15 H 0.107 0.893 16 C -0.114 4.114 17 N -0.442 5.442 18 Si 0.734 3.266 19 H -0.173 1.173 20 H -0.193 1.193 21 H -0.222 1.222 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.097 0.903 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.241 0.759 35 H 0.217 0.783 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.698 8.488 -0.572 10.239 hybrid contribution 0.263 -0.817 -0.656 1.080 sum -5.436 7.671 -1.228 9.481 Atomic orbital electron populations 1.22507 0.80278 1.01151 1.01086 1.86328 1.20068 1.24622 1.88402 1.19971 0.89084 0.83606 1.00959 1.67100 1.42066 0.98441 1.22666 1.21165 0.86365 0.90396 1.01264 1.18960 0.93232 0.90491 0.95771 1.21590 0.98545 0.94653 1.02796 1.21783 0.98980 1.01311 0.96721 1.21765 0.99001 1.01304 0.96604 1.67168 1.05369 1.33316 1.23873 1.18504 0.85713 0.88156 0.95272 1.41525 1.02475 1.10432 1.84257 1.17816 0.89796 0.93754 1.05078 1.18618 1.11280 0.95942 1.22411 0.89307 1.25819 0.93848 0.93579 0.98171 1.69739 1.39096 0.99945 1.35442 0.86398 0.82131 0.78720 0.79343 1.17293 1.19348 1.22210 0.93251 0.93726 0.90278 0.92444 0.93853 0.92441 0.92066 0.93017 0.93281 0.93232 0.93076 0.92036 0.75947 0.78259 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.89 9.63 101.05 0.97 1.86 16 2 O -0.29 -6.99 6.03 -17.64 -0.11 -7.10 16 3 C 0.25 6.22 6.06 -15.92 -0.10 6.12 16 4 N -0.57 -13.26 8.67 -10.24 -0.09 -13.35 16 5 C 0.27 5.98 6.26 -157.01 -0.98 5.00 16 6 C 0.02 0.30 0.91 -155.66 -0.14 0.16 16 7 C -0.12 -1.82 7.66 37.16 0.28 -1.53 16 8 C -0.13 -2.04 8.36 37.16 0.31 -1.72 16 9 C -0.13 -1.98 8.36 37.16 0.31 -1.67 16 10 N -0.57 -12.78 8.97 -9.51 -0.09 -12.86 16 11 C 0.37 8.59 7.86 -154.65 -1.22 7.38 16 12 N -0.84 -16.03 8.97 31.56 0.28 -15.75 16 13 C -0.05 -1.37 4.73 -106.18 -0.50 -1.88 16 14 C -0.45 -12.06 8.51 -37.94 -0.32 -12.38 16 15 H 0.09 2.42 7.66 -52.49 -0.40 2.02 16 16 C 0.10 2.77 4.96 -17.31 -0.09 2.68 16 17 N -0.82 -22.11 13.93 55.55 0.77 -21.33 16 18 Si 0.91 22.00 24.78 -169.99 -4.21 17.79 16 19 H -0.25 -5.80 5.35 56.52 0.30 -5.50 16 20 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H 0.05 0.90 8.12 -51.93 -0.42 0.47 16 23 H 0.04 0.84 8.12 -51.93 -0.42 0.42 16 24 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.06 0.93 8.03 -51.93 -0.42 0.51 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.92 8.03 -51.93 -0.42 0.50 16 28 H 0.06 1.01 8.00 -51.93 -0.42 0.59 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.00 8.00 -51.93 -0.42 0.58 16 34 H 0.41 7.57 7.56 -40.82 -0.31 7.26 16 35 H 0.39 6.29 8.95 -40.82 -0.37 5.92 16 36 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 LS Contribution 293.84 15.07 4.43 4.43 Total: -1.00 -29.67 293.84 -5.83 -35.50 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -5.35 Total: 8.67 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -1.47 Total: 4.00 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: 0.88 Total: -63.30 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.11 Total: -7.10 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.21 Total: 17.79 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.67 -5.83 -35.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260665093.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.897 kcal (2) G-P(sol) polarization free energy of solvation -29.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds