Wall clock time and date at job start Mon Mar 30 2020 04:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42895 * 109.47486 * 2 1 4 4 C 1.35831 * 117.00264 * 179.97438 * 3 2 1 5 5 C 1.41040 * 119.55785 * 179.97438 * 4 3 2 6 6 C 1.35565 * 120.01675 * 179.69173 * 5 4 3 7 7 C 1.41844 * 119.21422 * 0.60515 * 6 5 4 8 8 N 1.31774 * 120.41868 * 179.70064 * 7 6 5 9 9 C 1.46502 * 120.00001 * 185.72643 * 8 7 6 10 10 C 1.53002 * 109.46856 * 245.64130 * 9 8 7 11 11 C 1.52995 * 109.47070 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47118 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99698 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99593 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99683 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00337 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.46946 * 90.00199 * 16 14 12 18 18 H 1.48503 * 109.47076 * 209.99715 * 16 14 12 19 19 H 1.48498 * 109.47338 * 329.99887 * 16 14 12 20 20 N 1.37075 * 119.15896 * 359.42135 * 7 6 5 21 21 H 0.97004 * 120.05263 * 180.25303 * 20 7 6 22 22 N 1.30671 * 119.55469 * 0.02562 * 4 3 2 23 23 H 1.09001 * 109.47140 * 300.00507 * 1 2 3 24 24 H 1.08999 * 109.46632 * 60.00287 * 1 2 3 25 25 H 1.08996 * 109.47335 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47140 * 239.99493 * 2 1 3 27 27 H 1.09006 * 109.46746 * 120.00060 * 2 1 3 28 28 H 1.07993 * 119.99288 * 0.02562 * 5 4 3 29 29 H 1.08000 * 120.38865 * 180.30709 * 6 5 4 30 30 H 1.09002 * 109.47032 * 125.63769 * 9 8 7 31 31 H 1.08994 * 109.46930 * 5.63798 * 9 8 7 32 32 H 1.09007 * 109.46924 * 299.99830 * 10 9 8 33 33 H 1.09002 * 109.47294 * 59.99525 * 10 9 8 34 34 H 1.09007 * 109.47003 * 299.99652 * 11 10 9 35 35 H 1.09002 * 109.47555 * 59.99556 * 11 10 9 36 36 H 0.96998 * 120.00123 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3530 1.5251 0.0005 5 6 3.8821 2.8326 0.0000 6 6 5.2246 3.0209 0.0069 7 6 6.0822 1.8912 0.0014 8 7 7.3907 2.0468 0.0020 9 6 8.2672 0.8804 -0.1303 10 6 9.0647 0.6927 1.1619 11 6 9.9805 -0.5250 1.0237 12 6 10.7656 -0.7103 2.2967 13 1 10.6255 -0.0274 3.1216 14 6 11.6625 -1.7515 2.4081 15 7 12.3480 -1.9129 3.5189 16 14 11.9040 -2.9329 0.9815 17 1 12.9832 -2.4259 0.0962 18 1 12.2809 -4.2706 1.5049 19 1 10.6403 -3.0416 0.2093 20 7 5.5326 0.6354 0.0015 21 1 6.1070 -0.1463 0.0015 22 7 4.1409 0.4827 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.2175 3.6838 -0.0004 29 1 5.6361 4.0194 0.0115 30 1 8.9543 1.0347 -0.9622 31 1 7.6640 -0.0080 -0.3172 32 1 9.6679 1.5812 1.3489 33 1 8.3775 0.5385 1.9939 34 1 9.3776 -1.4137 0.8365 35 1 10.6677 -0.3704 0.1918 36 1 12.9792 -2.6452 3.5972 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381610755.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:21 Heat of formation + Delta-G solvation = 40.323251 kcal Electronic energy + Delta-G solvation = -17423.051043 eV Core-core repulsion = 14523.237759 eV Total energy + Delta-G solvation = -2899.813284 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.63275 -38.78103 -35.79692 -33.67631 -33.31423 -32.14368 -31.44224 -29.49074 -27.19723 -25.30453 -23.60202 -22.57589 -21.35313 -20.06407 -19.43774 -18.05954 -16.86172 -16.62299 -16.46406 -15.84487 -14.75738 -14.57598 -14.27102 -14.16687 -13.93899 -13.32538 -13.03929 -12.85195 -12.62649 -12.25102 -12.08511 -11.90806 -11.45086 -11.18570 -10.98011 -10.75509 -10.66966 -10.10164 -9.96469 -9.82036 -9.63622 -9.18206 -9.08459 -8.52812 -7.54212 -6.02978 -4.00933 0.44594 1.82769 2.23480 2.90937 3.28609 3.31085 3.38051 3.41291 4.13489 4.43298 4.45836 4.56779 4.65953 4.75045 4.99173 5.04501 5.30251 5.34987 5.42732 5.47259 5.58178 5.66384 5.79152 5.87536 5.91461 6.09706 6.49375 6.63959 6.69323 6.90421 7.00140 7.31789 7.42816 7.74497 7.79685 8.10042 8.56305 9.02470 9.59251 11.10649 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.030337 B = 0.003717 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.742514 B = 7530.197332 C = 8055.933749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.301 6.301 4 C 0.291 3.709 5 C -0.120 4.120 6 C -0.040 4.040 7 C 0.347 3.653 8 N -0.564 5.564 9 C 0.048 3.952 10 C -0.094 4.094 11 C -0.013 4.013 12 C -0.519 4.519 13 H 0.071 0.929 14 C 0.065 3.935 15 N -0.904 5.904 16 Si 0.881 3.119 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.267 1.267 20 N -0.534 5.534 21 H 0.439 0.561 22 N -0.303 5.303 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.154 0.846 29 H 0.167 0.833 30 H 0.082 0.918 31 H 0.025 0.975 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.013 0.987 35 H 0.013 0.987 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.570 7.010 -9.802 26.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.016 4.016 3 O -0.203 6.203 4 C 0.071 3.929 5 C -0.146 4.146 6 C -0.067 4.067 7 C 0.076 3.924 8 N -0.294 5.294 9 C -0.082 4.082 10 C -0.133 4.133 11 C -0.051 4.051 12 C -0.557 4.557 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.543 5.543 16 Si 0.709 3.291 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.191 1.191 20 N -0.276 5.276 21 H 0.286 0.714 22 N -0.134 5.134 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.172 0.828 29 H 0.185 0.815 30 H 0.100 0.900 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.031 0.969 35 H 0.031 0.969 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.077 6.739 -9.667 25.912 hybrid contribution 0.400 -1.329 -0.652 1.534 sum -22.678 5.410 -10.319 25.496 Atomic orbital electron populations 1.21809 0.92716 1.03046 1.03381 1.22706 0.95164 0.80954 1.02781 1.86310 1.15040 1.30526 1.88469 1.20279 0.84699 0.90873 0.97001 1.20998 0.95731 0.95728 1.02111 1.21195 0.90890 0.98828 0.95771 1.20456 0.91900 0.84793 0.95256 1.73485 0.98940 1.31145 1.25829 1.22149 0.95318 0.89971 1.00793 1.21486 0.97721 1.00293 0.93772 1.19580 0.94738 0.93106 0.97716 1.21138 1.21643 1.13221 0.99708 0.91042 1.25047 0.95379 0.97468 0.95696 1.69921 1.26441 1.31772 1.26209 0.86755 0.78893 0.80487 0.82990 1.20237 1.21393 1.19130 1.46203 1.00127 1.08282 1.72955 0.71372 1.74643 0.91248 1.26066 1.21435 0.91513 0.91582 0.90195 0.91459 0.91330 0.82818 0.81549 0.90018 0.95696 0.91734 0.93213 0.96911 0.96876 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.16 0.38 -0.48 16 2 C 0.06 0.49 6.03 37.16 0.22 0.71 16 3 O -0.30 -3.00 10.13 -19.21 -0.19 -3.20 16 4 C 0.29 3.27 7.61 -16.98 -0.13 3.15 16 5 C -0.12 -1.11 9.97 -39.48 -0.39 -1.50 16 6 C -0.04 -0.42 10.03 -39.16 -0.39 -0.81 16 7 C 0.35 4.97 7.54 -156.36 -1.18 3.79 16 8 N -0.56 -9.44 10.58 -60.30 -0.64 -10.08 16 9 C 0.05 0.85 6.28 -4.04 -0.03 0.82 16 10 C -0.09 -2.01 5.48 -26.73 -0.15 -2.16 16 11 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 12 C -0.52 -15.31 9.66 -34.44 -0.33 -15.64 16 13 H 0.07 2.27 7.99 -52.49 -0.42 1.86 16 14 C 0.06 1.94 5.47 -17.82 -0.10 1.85 16 15 N -0.90 -28.53 13.96 55.43 0.77 -27.75 16 16 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 20 N -0.53 -7.53 6.63 31.20 0.21 -7.33 16 21 H 0.44 6.22 6.32 -182.67 -1.16 5.06 16 22 N -0.30 -3.95 10.75 30.62 0.33 -3.62 16 23 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.56 8.10 -51.93 -0.42 0.13 16 27 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 28 H 0.15 0.91 8.06 -52.49 -0.42 0.48 16 29 H 0.17 1.36 8.06 -52.49 -0.42 0.93 16 30 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.02 0.41 5.55 -51.93 -0.29 0.12 16 32 H 0.06 1.43 8.14 -51.92 -0.42 1.00 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.01 0.31 7.20 -51.92 -0.37 -0.07 16 35 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 36 H 0.26 7.72 8.31 -40.82 -0.34 7.39 16 LS Contribution 306.77 15.07 4.62 4.62 Total: -1.00 -33.54 306.77 -7.79 -41.33 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -6.02 Total: -0.73 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -2.20 Total: -10.72 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.67 Total: -48.78 kcal Atomic # 8 Polarization: -3.00 SS G_CDS: -0.19 Total: -3.20 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.54 -7.79 -41.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381610755.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.653 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds