Wall clock time and date at job start Mon Mar 30 2020 04:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46920 * 2 1 4 4 N 1.46493 * 109.47292 * 120.00350 * 2 1 3 5 5 C 1.35306 * 125.86960 * 274.99968 * 4 2 1 6 6 C 1.35355 * 106.17911 * 180.02562 * 5 4 2 7 7 C 1.50699 * 126.75266 * 180.02562 * 6 5 4 8 8 H 1.08997 * 110.35501 * 5.69020 * 7 6 5 9 9 C 1.54940 * 110.31016 * 127.83626 * 7 6 5 10 10 C 1.55300 * 100.94415 * 155.35699 * 9 7 6 11 11 C 1.54377 * 102.25502 * 325.86750 * 10 9 7 12 12 H 1.09000 * 109.83189 * 261.84669 * 11 10 9 13 13 C 1.50695 * 109.83610 * 140.86829 * 11 10 9 14 14 H 1.08006 * 119.99951 * 0.41145 * 13 11 10 15 15 C 1.37873 * 120.00566 * 180.41294 * 13 11 10 16 16 N 1.31524 * 119.99732 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00521 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47111 * 89.99741 * 17 15 13 19 19 H 1.48500 * 109.47304 * 210.00251 * 17 15 13 20 20 H 1.48506 * 109.46960 * 330.00134 * 17 15 13 21 21 O 1.43245 * 107.58529 * 21.35358 * 11 10 9 22 22 N 1.33768 * 106.49435 * 0.26374 * 6 5 4 23 23 N 1.28642 * 108.88731 * 359.56398 * 22 6 5 24 24 H 1.08993 * 109.47043 * 299.99448 * 1 2 3 25 25 H 1.08995 * 109.47493 * 60.00014 * 1 2 3 26 26 H 1.08999 * 109.46585 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46692 * 240.00751 * 2 1 3 28 28 H 1.08995 * 109.47500 * 300.00514 * 3 2 1 29 29 H 1.09006 * 109.46861 * 60.00045 * 3 2 1 30 30 H 1.08992 * 109.47122 * 179.97438 * 3 2 1 31 31 H 1.08007 * 126.91522 * 0.06359 * 5 4 2 32 32 H 1.09007 * 111.12756 * 37.43650 * 9 7 6 33 33 H 1.09003 * 111.16152 * 273.29338 * 9 7 6 34 34 H 1.09006 * 110.85287 * 207.67375 * 10 9 7 35 35 H 1.09004 * 111.02471 * 84.13526 * 10 9 7 36 36 H 0.96997 * 119.99892 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1926 -0.1344 2.4171 6 6 2.6555 -1.1219 3.2188 7 6 3.0054 -1.0075 4.6802 8 1 2.7406 -0.0197 5.0572 9 6 2.2784 -2.1068 5.4949 10 6 3.2173 -2.2311 6.7257 11 6 4.6067 -1.9689 6.1058 12 1 5.1074 -2.9164 5.9064 13 6 5.4384 -1.1375 7.0480 14 1 5.0302 -0.8279 7.9988 15 6 6.7205 -0.7721 6.6965 16 7 7.2175 -1.1487 5.5384 17 14 7.7513 0.2592 7.8642 18 1 8.5198 -0.6348 8.7671 19 1 8.6923 1.1007 7.0822 20 1 6.8610 1.1314 8.6716 21 8 4.4058 -1.2580 4.8785 22 7 2.7462 -2.2181 2.4575 23 7 2.3561 -1.9308 1.2658 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1299 1.4426 0.0005 31 1 2.0004 0.8911 2.6963 32 1 2.2337 -3.0432 4.9387 33 1 1.2815 -1.7816 5.7925 34 1 3.1660 -3.2324 7.1533 35 1 2.9793 -1.4778 7.4768 36 1 8.1193 -0.8912 5.2909 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390472624.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:49 Heat of formation + Delta-G solvation = 47.895885 kcal Electronic energy + Delta-G solvation = -18551.333405 eV Core-core repulsion = 15651.848495 eV Total energy + Delta-G solvation = -2899.484910 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.90736 -38.02029 -36.41311 -32.72391 -31.53577 -30.93226 -30.73211 -28.10981 -27.60531 -24.78678 -23.70415 -22.19537 -20.80322 -20.09461 -19.82516 -17.12758 -16.41701 -16.07194 -15.37635 -15.00740 -14.69280 -14.43293 -14.05159 -13.56484 -13.19213 -12.85975 -12.64542 -12.60886 -12.06770 -11.82538 -11.72898 -11.64110 -11.30976 -10.88259 -10.81345 -10.52870 -10.42174 -10.27537 -10.09520 -9.77918 -9.64559 -9.14189 -8.75076 -8.45499 -7.77170 -5.89674 -4.04597 1.91797 2.49999 2.98331 3.35208 3.41504 3.44283 4.18014 4.47056 4.48791 4.65225 4.72261 5.04800 5.11233 5.21078 5.28033 5.32914 5.39810 5.43719 5.60451 5.65332 5.70760 5.74021 5.84778 6.05056 6.25660 6.42947 6.50429 6.64291 6.75690 6.82586 6.89950 6.97949 7.75538 7.96957 8.37295 8.67876 8.94576 9.12811 9.66771 11.16469 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.030518 B = 0.005367 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.261243 B = 5215.626119 C = 5685.881374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 C -0.166 4.166 4 N -0.294 5.294 5 C -0.049 4.049 6 C 0.004 3.996 7 C 0.158 3.842 8 H 0.069 0.931 9 C -0.145 4.145 10 C -0.144 4.144 11 C 0.207 3.793 12 H 0.040 0.960 13 C -0.545 4.545 14 H 0.060 0.940 15 C 0.078 3.922 16 N -0.861 5.861 17 Si 0.888 3.112 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 O -0.345 6.345 22 N -0.247 5.247 23 N -0.099 5.099 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.111 0.889 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.184 0.816 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.981 5.665 -9.779 17.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 C -0.224 4.224 4 N -0.089 5.089 5 C -0.200 4.200 6 C -0.134 4.134 7 C 0.097 3.903 8 H 0.087 0.913 9 C -0.183 4.183 10 C -0.182 4.182 11 C 0.151 3.849 12 H 0.057 0.943 13 C -0.582 4.582 14 H 0.078 0.922 15 C -0.127 4.127 16 N -0.497 5.497 17 Si 0.715 3.285 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 O -0.264 6.264 22 N -0.115 5.115 23 N -0.078 5.078 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.129 0.871 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.201 0.799 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.506 4.399 -10.839 17.868 hybrid contribution 0.358 1.700 1.116 2.065 sum -13.148 6.100 -9.724 17.453 Atomic orbital electron populations 1.22213 0.92781 1.03656 1.03522 1.21589 0.95558 0.93706 0.85410 1.22210 1.02893 0.93379 1.03918 1.47473 1.43320 1.08547 1.09552 1.23182 1.09804 1.01663 0.85307 1.22251 1.02871 0.89613 0.98671 1.20827 0.87135 0.97584 0.84789 0.91320 1.23207 0.98238 0.99485 0.97382 1.23204 0.97089 1.00935 0.96943 1.20312 0.90060 0.92876 0.81617 0.94270 1.21406 0.98379 1.35960 1.02500 0.92218 1.25078 0.97669 0.95266 0.94712 1.70070 1.15595 1.43824 1.20203 0.86689 0.80278 0.80505 0.80979 1.20585 1.21224 1.19827 1.88848 1.16826 1.77428 1.43320 1.75042 1.15000 1.25111 0.96304 1.78256 1.16651 0.96191 1.16670 0.91493 0.90013 0.91358 0.87142 0.89730 0.91081 0.91013 0.79850 0.90702 0.91904 0.92117 0.91557 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.52 37.16 0.35 -0.83 16 2 C 0.14 1.30 3.85 -67.93 -0.26 1.04 16 3 C -0.17 -1.22 8.83 37.16 0.33 -0.89 16 4 N -0.29 -4.33 3.25 -54.76 -0.18 -4.51 16 5 C -0.05 -0.77 10.62 -17.05 -0.18 -0.95 16 6 C 0.00 0.08 6.23 -82.78 -0.52 -0.43 16 7 C 0.16 3.37 3.95 -26.86 -0.11 3.27 16 8 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 9 C -0.14 -2.81 6.56 -24.49 -0.16 -2.97 16 10 C -0.14 -3.07 6.53 -24.79 -0.16 -3.24 16 11 C 0.21 5.56 3.36 -27.16 -0.09 5.47 16 12 H 0.04 1.16 8.14 -51.93 -0.42 0.74 16 13 C -0.54 -15.59 8.75 -34.44 -0.30 -15.90 16 14 H 0.06 1.64 7.52 -52.48 -0.39 1.25 16 15 C 0.08 2.28 5.41 -17.82 -0.10 2.19 16 16 N -0.86 -26.59 12.91 55.43 0.72 -25.88 16 17 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 O -0.35 -9.47 10.18 -35.23 -0.36 -9.83 16 22 N -0.25 -5.34 12.20 33.29 0.41 -4.94 16 23 N -0.10 -1.86 13.17 60.35 0.79 -1.06 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.49 7.17 -51.93 -0.37 0.12 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.18 2.16 7.30 -52.48 -0.38 1.78 16 32 H 0.07 1.50 7.87 -51.93 -0.41 1.09 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.36 7.65 -51.93 -0.40 0.97 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 303.41 15.07 4.57 4.57 Total: -1.00 -35.24 303.41 -5.58 -40.83 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -5.32 Total: -2.64 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -1.19 Total: -13.24 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 1.74 Total: -36.39 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.36 Total: -9.83 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.24 -5.58 -40.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390472624.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.722 kcal (2) G-P(sol) polarization free energy of solvation -35.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds