Wall clock time and date at job start Mon Mar 30 2020 04:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46920 * 2 1 4 4 N 1.46493 * 109.47292 * 120.00350 * 2 1 3 5 5 C 1.35306 * 125.86960 * 274.99968 * 4 2 1 6 6 C 1.35355 * 106.17911 * 180.02562 * 5 4 2 7 7 C 1.50699 * 126.75266 * 180.02562 * 6 5 4 8 8 H 1.08997 * 110.35501 * 5.69020 * 7 6 5 9 9 C 1.54940 * 110.31016 * 127.83626 * 7 6 5 10 10 C 1.55300 * 100.94415 * 155.35699 * 9 7 6 11 11 C 1.54377 * 102.25502 * 325.86750 * 10 9 7 12 12 H 1.09000 * 109.83189 * 261.84669 * 11 10 9 13 13 C 1.50695 * 109.83610 * 140.86829 * 11 10 9 14 14 H 1.08006 * 119.99951 * 0.41145 * 13 11 10 15 15 C 1.37873 * 120.00566 * 180.41294 * 13 11 10 16 16 N 1.31524 * 119.99732 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00521 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47111 * 89.99741 * 17 15 13 19 19 H 1.48500 * 109.47304 * 210.00251 * 17 15 13 20 20 H 1.48506 * 109.46960 * 330.00134 * 17 15 13 21 21 O 1.43245 * 107.58529 * 21.35358 * 11 10 9 22 22 N 1.33768 * 106.49435 * 0.26374 * 6 5 4 23 23 N 1.28642 * 108.88731 * 359.56398 * 22 6 5 24 24 H 1.08993 * 109.47043 * 299.99448 * 1 2 3 25 25 H 1.08995 * 109.47493 * 60.00014 * 1 2 3 26 26 H 1.08999 * 109.46585 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46692 * 240.00751 * 2 1 3 28 28 H 1.08995 * 109.47500 * 300.00514 * 3 2 1 29 29 H 1.09006 * 109.46861 * 60.00045 * 3 2 1 30 30 H 1.08992 * 109.47122 * 179.97438 * 3 2 1 31 31 H 1.08007 * 126.91522 * 0.06359 * 5 4 2 32 32 H 1.09007 * 111.12756 * 37.43650 * 9 7 6 33 33 H 1.09003 * 111.16152 * 273.29338 * 9 7 6 34 34 H 1.09006 * 110.85287 * 207.67375 * 10 9 7 35 35 H 1.09004 * 111.02471 * 84.13526 * 10 9 7 36 36 H 0.96997 * 119.99892 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1926 -0.1344 2.4171 6 6 2.6555 -1.1219 3.2188 7 6 3.0054 -1.0075 4.6802 8 1 2.7406 -0.0197 5.0572 9 6 2.2784 -2.1068 5.4949 10 6 3.2173 -2.2311 6.7257 11 6 4.6067 -1.9689 6.1058 12 1 5.1074 -2.9164 5.9064 13 6 5.4384 -1.1375 7.0480 14 1 5.0302 -0.8279 7.9988 15 6 6.7205 -0.7721 6.6965 16 7 7.2175 -1.1487 5.5384 17 14 7.7513 0.2592 7.8642 18 1 8.5198 -0.6348 8.7671 19 1 8.6923 1.1007 7.0822 20 1 6.8610 1.1314 8.6716 21 8 4.4058 -1.2580 4.8785 22 7 2.7462 -2.2181 2.4575 23 7 2.3561 -1.9308 1.2658 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1299 1.4426 0.0005 31 1 2.0004 0.8911 2.6963 32 1 2.2337 -3.0432 4.9387 33 1 1.2815 -1.7816 5.7925 34 1 3.1660 -3.2324 7.1533 35 1 2.9793 -1.4778 7.4768 36 1 8.1193 -0.8912 5.2909 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390472624.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:48 Heat of formation + Delta-G solvation = 22.857497 kcal Electronic energy + Delta-G solvation = -18552.419151 eV Core-core repulsion = 15651.848495 eV Total energy + Delta-G solvation = -2900.570656 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.22525 -39.83083 -37.36133 -34.76912 -33.06709 -32.52580 -32.14307 -29.82992 -28.27404 -26.69116 -24.80665 -23.84423 -22.11317 -21.93555 -21.11064 -18.60397 -18.20418 -17.35730 -16.99235 -16.72141 -16.18295 -15.56571 -15.37864 -15.11170 -14.52823 -14.12671 -13.89771 -13.66807 -13.47250 -13.16616 -12.99917 -12.77806 -12.55368 -12.38424 -12.30648 -12.28000 -12.15904 -11.97646 -11.71571 -11.47048 -11.08301 -10.94083 -10.66927 -10.18013 -9.78492 -8.08390 -6.32011 0.66148 1.42208 1.42330 1.46712 1.53444 1.55076 2.43860 3.11290 3.31311 3.57293 3.74066 3.81502 3.86590 3.97536 4.00775 4.20513 4.32464 4.46379 4.62137 4.63260 4.70113 4.74816 4.77013 4.77981 4.96533 4.99426 5.13010 5.17004 5.18291 5.22211 5.33470 5.65060 5.77390 5.78474 6.21744 6.63432 7.07192 7.45963 7.57002 8.98754 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.030518 B = 0.005367 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.261243 B = 5215.626119 C = 5685.881374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.125 3.875 3 C -0.162 4.162 4 N -0.278 5.278 5 C -0.025 4.025 6 C -0.033 4.033 7 C 0.149 3.851 8 H 0.089 0.911 9 C -0.130 4.130 10 C -0.134 4.134 11 C 0.198 3.802 12 H -0.009 1.009 13 C -0.560 4.560 14 H 0.070 0.930 15 C 0.019 3.981 16 N -0.908 5.908 17 Si 0.964 3.036 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.258 1.258 21 O -0.386 6.386 22 N -0.298 5.298 23 N -0.122 5.122 24 H 0.070 0.930 25 H 0.115 0.885 26 H 0.051 0.949 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.227 0.773 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.925 8.231 -9.719 20.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.025 3.975 3 C -0.220 4.220 4 N -0.073 5.073 5 C -0.177 4.177 6 C -0.172 4.172 7 C 0.089 3.911 8 H 0.107 0.893 9 C -0.168 4.168 10 C -0.171 4.171 11 C 0.143 3.857 12 H 0.009 0.991 13 C -0.597 4.597 14 H 0.088 0.912 15 C -0.182 4.182 16 N -0.546 5.546 17 Si 0.788 3.212 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.182 1.182 21 O -0.306 6.306 22 N -0.164 5.164 23 N -0.100 5.100 24 H 0.089 0.911 25 H 0.134 0.866 26 H 0.070 0.930 27 H 0.133 0.867 28 H 0.136 0.864 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.243 0.757 32 H 0.079 0.921 33 H 0.122 0.878 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.481 6.954 -10.799 20.116 hybrid contribution 0.876 0.932 0.955 1.596 sum -14.605 7.886 -9.845 19.298 Atomic orbital electron populations 1.22207 0.90590 1.03209 1.05417 1.22201 0.97242 0.94558 0.83470 1.22252 1.01680 0.91914 1.06110 1.47995 1.41037 1.07529 1.10777 1.23662 1.07028 1.02345 0.84636 1.22247 1.05486 0.90805 0.98627 1.21100 0.84463 0.99024 0.86507 0.89320 1.23119 0.99546 0.98467 0.95676 1.23080 0.94249 1.02046 0.97758 1.20192 0.92785 0.90724 0.82037 0.99148 1.21846 0.99098 1.35650 1.03130 0.91226 1.26040 0.99181 0.96614 0.96386 1.70255 1.15976 1.45718 1.22679 0.85493 0.78376 0.78720 0.78582 1.19729 1.21183 1.18225 1.88739 1.21031 1.77435 1.43364 1.74968 1.16862 1.26988 0.97577 1.78136 1.17785 0.98275 1.15817 0.91063 0.86614 0.92974 0.86680 0.86372 0.90104 0.92899 0.75687 0.92124 0.87811 0.90873 0.90201 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.52 71.98 0.69 -1.08 16 2 C 0.12 2.02 3.85 45.00 0.17 2.20 16 3 C -0.16 -1.82 8.83 71.98 0.64 -1.18 16 4 N -0.28 -7.83 3.25 -327.16 -1.06 -8.90 16 5 C -0.02 -0.74 10.62 83.49 0.89 0.15 16 6 C -0.03 -1.30 6.23 41.60 0.26 -1.04 16 7 C 0.15 6.35 3.95 30.51 0.12 6.47 16 8 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 9 C -0.13 -4.93 6.56 32.05 0.21 -4.72 16 10 C -0.13 -5.66 6.53 31.85 0.21 -5.45 16 11 C 0.20 11.05 3.36 30.31 0.10 11.16 16 12 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 13 C -0.56 -32.50 8.75 25.60 0.22 -32.28 16 14 H 0.07 3.79 7.52 -2.91 -0.02 3.77 16 15 C 0.02 1.12 5.41 84.65 0.46 1.58 16 16 N -0.91 -58.19 12.91 21.45 0.28 -57.92 16 17 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 20 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 21 O -0.39 -21.89 10.18 -148.98 -1.52 -23.41 16 22 N -0.30 -13.22 12.20 -48.60 -0.59 -13.81 16 23 N -0.12 -4.60 13.17 37.02 0.49 -4.12 16 24 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.08 0.77 7.17 -2.38 -0.02 0.76 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.23 4.45 7.30 -2.91 -0.02 4.42 16 32 H 0.06 2.46 7.87 -2.38 -0.02 2.44 16 33 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 34 H 0.07 2.85 8.14 -2.38 -0.02 2.84 16 35 H 0.08 3.15 7.65 -2.39 -0.02 3.13 16 36 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -81.45 303.41 4.64 -76.81 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 1.06 Total: 8.53 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: 3.96 Total: -24.19 kcal Atomic # 7 Polarization: -83.84 SS G_CDS: -0.89 Total: -84.74 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -1.52 Total: -23.41 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -81.45 4.64 -76.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390472624.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.667 kcal (2) G-P(sol) polarization free energy of solvation -81.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds