Wall clock time and date at job start Mon Mar 30 2020 04:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46646 * 2 1 4 4 C 1.53045 * 109.46010 * 240.03073 * 2 1 3 5 5 C 1.53119 * 109.27790 * 180.80769 * 4 2 1 6 6 C 1.53114 * 109.15925 * 57.65914 * 5 4 2 7 7 H 1.09003 * 109.50446 * 182.40543 * 6 5 4 8 8 C 1.50697 * 109.53684 * 62.30435 * 6 5 4 9 9 O 1.21292 * 119.99993 * 264.33314 * 8 6 5 10 10 N 1.34780 * 119.99795 * 84.33918 * 8 6 5 11 11 C 1.37097 * 119.99411 * 185.12775 * 10 8 6 12 12 H 1.08002 * 120.00809 * 21.81470 * 11 10 8 13 13 C 1.38956 * 119.99608 * 201.81125 * 11 10 8 14 14 N 1.31411 * 120.00142 * 23.84223 * 13 11 10 15 15 Si 1.86801 * 119.99921 * 203.84691 * 13 11 10 16 16 H 1.48497 * 109.47376 * 89.99584 * 15 13 11 17 17 H 1.48498 * 109.46737 * 210.00018 * 15 13 11 18 18 H 1.48500 * 109.47022 * 329.99178 * 15 13 11 19 19 C 1.46496 * 120.00055 * 5.11877 * 10 8 6 20 20 C 1.47201 * 109.46555 * 88.79552 * 19 10 8 21 21 N 7.07221 * 147.34140 * 171.37102 * 2 1 3 22 22 C 1.53044 * 109.27780 * 302.34210 * 6 5 4 23 23 N 1.46843 * 109.46080 * 119.98713 * 2 1 3 24 24 H 1.09000 * 109.46941 * 300.02540 * 1 2 3 25 25 H 1.09006 * 109.46690 * 60.01612 * 1 2 3 26 26 H 1.08997 * 109.47618 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.50671 * 300.75407 * 4 2 1 28 28 H 1.09001 * 109.49646 * 60.86962 * 4 2 1 29 29 H 1.08999 * 109.52167 * 297.74876 * 5 4 2 30 30 H 1.09000 * 109.52229 * 177.56084 * 5 4 2 31 31 H 0.96997 * 120.00239 * 180.02562 * 14 13 11 32 32 H 1.09000 * 109.47279 * 208.79181 * 19 10 8 33 33 H 1.08994 * 109.47333 * 328.79684 * 19 10 8 34 34 H 1.08996 * 109.45896 * 179.19688 * 22 6 5 35 35 H 1.08998 * 109.46434 * 299.17726 * 22 6 5 36 36 H 1.00908 * 110.99803 * 305.84982 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5709 -0.7361 -1.2357 6 6 4.0547 -1.4191 0.0464 7 1 5.1438 -1.3950 0.0829 8 6 3.5821 -2.8499 0.0644 9 8 2.5623 -3.1444 0.6512 10 7 4.2928 -3.8023 -0.5716 11 6 3.8100 -5.0834 -0.6451 12 1 2.7530 -5.2699 -0.5254 13 6 4.6808 -6.1418 -0.8736 14 7 5.9523 -6.0256 -0.5625 15 14 4.0440 -7.7300 -1.6231 16 1 4.1433 -7.6537 -3.1028 17 1 4.8573 -8.8707 -1.1305 18 1 2.6253 -7.9281 -1.2316 19 6 5.5809 -3.4685 -1.1843 20 6 6.6551 -3.6405 -0.1927 21 7 7.4841 -3.7732 0.5726 22 6 3.4864 -0.6780 1.2590 23 7 2.0193 -0.6920 1.1992 24 1 -0.3633 0.5142 0.8898 25 1 -0.3633 0.5136 -0.8902 26 1 -0.3634 -1.0276 0.0005 27 1 1.6658 -1.7446 -1.2579 28 1 1.6895 -0.1979 -2.1399 29 1 3.9457 0.2870 -1.2673 30 1 3.9379 -1.2863 -2.1022 31 1 6.5602 -6.7644 -0.7224 32 1 5.7612 -4.1280 -2.0333 33 1 5.5637 -2.4335 -1.5255 34 1 3.8174 -1.1704 2.1733 35 1 3.8402 0.3529 1.2531 36 1 1.6195 -0.2929 2.0354 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397065113.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:20 Heat of formation + Delta-G solvation = -16.533326 kcal Electronic energy + Delta-G solvation = -19386.890049 eV Core-core repulsion = 16484.611279 eV Total energy + Delta-G solvation = -2902.278770 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.13782 -38.79624 -37.25576 -35.91483 -34.10918 -33.17062 -32.62216 -29.11874 -28.22471 -26.58886 -24.41187 -23.27109 -21.57372 -19.73246 -19.55878 -17.99807 -17.81133 -17.15028 -16.39360 -15.90389 -15.55608 -15.49357 -14.95692 -14.60180 -14.56703 -14.18109 -13.87328 -13.60530 -13.48680 -13.17018 -13.03501 -12.85451 -12.72925 -12.66443 -12.30771 -12.24744 -12.15434 -12.00356 -11.70805 -11.29873 -11.13796 -10.99339 -10.02892 -9.74940 -8.91388 -8.32481 -5.88814 1.41838 1.47508 1.57947 1.96973 2.24136 2.37120 2.42747 3.05987 3.21767 3.44498 3.68128 3.88348 3.98994 4.03452 4.20515 4.38289 4.47653 4.55680 4.61431 4.73559 4.79608 4.86255 4.89359 4.94044 5.00925 5.11527 5.18481 5.32535 5.44137 5.53849 5.59462 6.16839 6.39755 6.53535 6.74677 7.15599 7.27754 7.51304 8.17755 8.70245 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.025706 B = 0.007721 C = 0.006595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.987191 B = 3625.575272 C = 4244.763303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.088 3.912 3 H 0.051 0.949 4 C -0.114 4.114 5 C -0.105 4.105 6 C -0.106 4.106 7 H 0.090 0.910 8 C 0.469 3.531 9 O -0.572 6.572 10 N -0.471 5.471 11 C -0.330 4.330 12 H 0.076 0.924 13 C 0.000 4.000 14 N -0.895 5.895 15 Si 0.981 3.019 16 H -0.259 1.259 17 H -0.291 1.291 18 H -0.278 1.278 19 C 0.226 3.774 20 C 0.258 3.742 21 N -0.513 5.513 22 C 0.086 3.914 23 N -0.684 5.684 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.037 0.963 27 H 0.036 0.964 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.269 0.731 32 H 0.110 0.890 33 H 0.135 0.865 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.596 13.847 -5.697 15.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.021 4.021 3 H 0.068 0.932 4 C -0.152 4.152 5 C -0.143 4.143 6 C -0.128 4.128 7 H 0.109 0.891 8 C 0.258 3.742 9 O -0.452 6.452 10 N -0.194 5.194 11 C -0.457 4.457 12 H 0.094 0.906 13 C -0.201 4.201 14 N -0.534 5.534 15 Si 0.806 3.194 16 H -0.184 1.184 17 H -0.217 1.217 18 H -0.203 1.203 19 C 0.099 3.901 20 C -0.059 4.059 21 N -0.194 5.194 22 C -0.044 4.044 23 N -0.317 5.317 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.105 0.895 29 H 0.117 0.883 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.128 0.872 33 H 0.152 0.848 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.797 12.754 -4.571 14.070 hybrid contribution -0.148 -0.695 0.117 0.720 sum -3.945 12.059 -4.454 13.447 Atomic orbital electron populations 1.21753 0.94181 1.01308 1.02376 1.21482 0.95476 0.94721 0.90424 0.93162 1.21642 0.95546 1.00335 0.97680 1.21584 0.96131 1.01515 0.95038 1.21472 1.00685 0.91898 0.98703 0.89145 1.20882 0.85731 0.87875 0.79722 1.90574 1.27219 1.83009 1.44446 1.43860 1.17138 1.08563 1.49842 1.19475 0.93574 0.83145 1.49531 0.90624 1.25858 0.95348 1.01584 0.97318 1.69855 1.04879 1.34234 1.44458 0.85110 0.77699 0.77291 0.79307 1.18386 1.21717 1.20290 1.18902 0.77529 1.03014 0.90682 1.29723 0.93282 0.88930 0.93980 1.80834 1.13875 1.13607 1.11120 1.21552 0.88539 0.97939 0.96360 1.60052 1.06552 1.60253 1.04836 0.92049 0.90593 0.94382 0.94500 0.89492 0.88336 0.90484 0.92084 0.87205 0.84763 0.93359 0.92324 0.84070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.43 71.98 0.68 -2.46 16 2 C 0.09 2.20 3.04 44.94 0.14 2.33 16 3 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 4 C -0.11 -3.06 5.07 30.65 0.16 -2.90 16 5 C -0.10 -2.58 5.27 30.67 0.16 -2.42 16 6 C -0.11 -3.39 2.17 -11.49 -0.02 -3.42 16 7 H 0.09 2.70 6.43 -2.39 -0.02 2.69 16 8 C 0.47 20.92 5.78 87.66 0.51 21.42 16 9 O -0.57 -30.32 14.20 -3.07 -0.04 -30.36 16 10 N -0.47 -21.98 2.58 -645.42 -1.67 -23.65 16 11 C -0.33 -17.52 9.19 84.04 0.77 -16.75 16 12 H 0.08 4.37 7.53 -2.91 -0.02 4.35 16 13 C 0.00 0.01 4.79 84.93 0.41 0.41 16 14 N -0.90 -47.08 9.53 21.66 0.21 -46.87 16 15 Si 0.98 41.58 29.61 68.60 2.03 43.61 16 16 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 17 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 19 C 0.23 8.70 4.82 84.57 0.41 9.11 16 20 C 0.26 11.54 12.55 89.44 1.12 12.66 16 21 N -0.51 -25.07 18.54 20.01 0.37 -24.70 16 22 C 0.09 2.59 5.78 86.33 0.50 3.09 16 23 N -0.68 -20.98 4.89 -491.67 -2.40 -23.39 16 24 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.04 1.33 7.02 -2.39 -0.02 1.31 16 28 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.08 1.79 7.21 -2.39 -0.02 1.77 16 31 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 32 H 0.11 4.27 7.13 -2.39 -0.02 4.26 16 33 H 0.13 3.73 5.37 -2.39 -0.01 3.72 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.34 9.12 8.79 -89.69 -0.79 8.34 16 Total: -1.00 -69.84 291.49 3.62 -66.22 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.31 Total: 18.06 kcal Atomic # 6 Polarization: 16.27 SS G_CDS: 4.82 Total: 21.09 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -3.49 Total: -118.61 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.04 Total: -30.36 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -69.84 3.62 -66.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397065113.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.683 kcal (2) G-P(sol) polarization free energy of solvation -69.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds