Wall clock time and date at job start Mon Mar 30 2020 04:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.46949 * 2 1 4 4 C 1.35814 * 126.05082 * 124.99914 * 3 2 1 5 5 C 1.35755 * 107.56144 * 180.02562 * 4 3 2 6 6 N 1.40765 * 126.08137 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99854 * 179.97438 * 6 5 4 8 8 O 1.21303 * 120.00450 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99675 * 179.72930 * 7 6 5 10 10 C 1.53004 * 109.47208 * 180.27843 * 9 7 6 11 11 C 1.52997 * 109.47000 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46940 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00043 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00213 * 180.02562 * 12 11 10 15 15 N 1.31522 * 120.00043 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00201 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47136 * 90.00100 * 16 14 12 18 18 H 1.48496 * 109.47022 * 209.99847 * 16 14 12 19 19 H 1.48499 * 109.47078 * 330.00388 * 16 14 12 20 20 C 1.40256 * 107.84136 * 0.24533 * 5 4 3 21 21 N 1.30835 * 108.33208 * 359.58580 * 20 5 4 22 22 H 1.09000 * 109.46868 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47395 * 300.00172 * 1 2 3 24 24 H 1.08998 * 109.46936 * 60.00582 * 1 2 3 25 25 H 1.09000 * 109.47117 * 239.99400 * 2 1 3 26 26 H 1.09000 * 109.46677 * 119.99881 * 2 1 3 27 27 H 1.07992 * 126.22132 * 0.06522 * 4 3 2 28 28 H 0.97001 * 119.99661 * 0.02562 * 6 5 4 29 29 H 1.09009 * 109.47352 * 300.27556 * 9 7 6 30 30 H 1.08998 * 109.47585 * 60.27844 * 9 7 6 31 31 H 1.08995 * 109.46638 * 300.00002 * 10 9 7 32 32 H 1.08998 * 109.46846 * 59.99549 * 10 9 7 33 33 H 1.08995 * 109.47672 * 299.99669 * 11 10 9 34 34 H 1.09007 * 109.47288 * 60.00489 * 11 10 9 35 35 H 0.96997 * 119.99944 * 179.97438 * 15 14 12 36 36 H 1.07995 * 125.83761 * 179.76181 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8785 1.9248 0.8995 5 6 3.0744 3.2211 0.5471 6 7 3.8974 4.1468 1.2160 7 6 4.0028 5.4095 0.7569 8 8 3.3882 5.7486 -0.2324 9 6 4.8792 6.4021 1.4765 10 6 4.8164 7.7520 0.7590 11 6 5.7057 8.7599 1.4900 12 6 5.6443 10.0894 0.7830 13 1 5.0320 10.2040 -0.0992 14 6 6.3699 11.1593 1.2623 15 7 7.1160 11.0195 2.3364 16 14 6.2933 12.8073 0.3863 17 1 5.1888 13.6200 0.9563 18 1 7.5806 13.5249 0.5683 19 1 6.0495 12.5873 -1.0619 20 6 2.3060 3.4760 -0.5982 21 7 1.6802 2.3751 -0.9272 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.3259 1.4179 1.7415 28 1 4.3892 3.8755 2.0069 29 1 4.5292 6.5192 2.5022 30 1 5.9077 6.0414 1.4825 31 1 5.1664 7.6349 -0.2665 32 1 3.7879 8.1128 0.7530 33 1 5.3553 8.8769 2.5155 34 1 6.7343 8.3993 1.4964 35 1 7.6267 11.7721 2.6734 36 1 2.2438 4.4189 -1.1210 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593965843.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:45 Heat of formation + Delta-G solvation = 0.302023 kcal Electronic energy + Delta-G solvation = -17338.976192 eV Core-core repulsion = 14437.427457 eV Total energy + Delta-G solvation = -2901.548734 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.30739 -40.50143 -36.31297 -35.87671 -34.77236 -33.96430 -31.21513 -30.31657 -28.82804 -25.84798 -24.69586 -23.04515 -22.10363 -21.57546 -20.72054 -18.61226 -18.31605 -17.61375 -16.83431 -16.80763 -16.46601 -16.26386 -15.25578 -15.02540 -14.97571 -14.60707 -14.24373 -13.82317 -13.72358 -13.44473 -13.09267 -12.93846 -12.61474 -12.48924 -12.39717 -12.37193 -11.75270 -11.62990 -11.50034 -11.41619 -11.22704 -10.71783 -10.52084 -10.36547 -8.68315 -8.18702 -6.28012 0.80466 1.38904 1.40642 1.41479 1.52051 1.53356 2.16356 2.27021 2.43617 3.14397 3.68389 3.84362 4.01055 4.12366 4.21357 4.26289 4.32191 4.41116 4.57780 4.62935 4.82484 4.87106 4.95483 5.01773 5.14418 5.15843 5.24944 5.29103 5.57192 5.79632 5.81803 5.90307 6.13978 6.30190 6.52894 6.71613 6.87746 7.30514 7.40467 8.92758 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.072675 B = 0.003059 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.182722 B = 9150.980565 C = 9443.713342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.126 3.874 3 N -0.370 5.370 4 C 0.040 3.960 5 C -0.025 4.025 6 N -0.631 5.631 7 C 0.513 3.487 8 O -0.570 6.570 9 C -0.124 4.124 10 C -0.083 4.083 11 C 0.026 3.974 12 C -0.547 4.547 13 H 0.050 0.950 14 C 0.003 3.997 15 N -0.929 5.929 16 Si 0.960 3.040 17 H -0.272 1.272 18 H -0.278 1.278 19 H -0.269 1.269 20 C 0.023 3.977 21 N -0.318 5.318 22 H 0.102 0.898 23 H 0.052 0.948 24 H 0.044 0.956 25 H 0.091 0.909 26 H 0.136 0.864 27 H 0.227 0.773 28 H 0.429 0.571 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.003 0.997 34 H 0.003 0.997 35 H 0.264 0.736 36 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.265 -25.786 1.750 27.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.007 3.993 3 N -0.155 5.155 4 C -0.108 4.108 5 C -0.129 4.129 6 N -0.278 5.278 7 C 0.303 3.697 8 O -0.448 6.448 9 C -0.163 4.163 10 C -0.122 4.122 11 C -0.011 4.011 12 C -0.585 4.585 13 H 0.068 0.932 14 C -0.195 4.195 15 N -0.569 5.569 16 Si 0.785 3.215 17 H -0.198 1.198 18 H -0.203 1.203 19 H -0.194 1.194 20 C -0.163 4.163 21 N -0.141 5.141 22 H 0.121 0.879 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.109 0.891 26 H 0.154 0.846 27 H 0.243 0.757 28 H 0.268 0.732 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.021 0.979 34 H 0.021 0.979 35 H 0.073 0.927 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -9.411 -26.131 0.357 27.777 hybrid contribution 0.825 1.575 0.404 1.823 sum -8.587 -24.556 0.761 26.025 Atomic orbital electron populations 1.22044 0.94000 1.04024 1.01998 1.22092 0.95935 0.75240 1.06035 1.48936 1.35410 1.10865 1.20316 1.22604 0.97509 0.92318 0.98401 1.18040 1.04080 0.91482 0.99314 1.42736 1.45680 1.08684 1.30686 1.21229 0.81701 0.82624 0.84185 1.90567 1.47367 1.78834 1.28036 1.21643 1.00656 0.93090 1.00938 1.21170 0.99274 0.93321 0.98403 1.19022 0.94291 0.92934 0.94902 1.21710 1.27312 0.97263 1.12203 0.93155 1.25886 0.94880 1.02868 0.95850 1.70061 1.30166 1.32659 1.24030 0.85525 0.77757 0.79222 0.79029 1.19758 1.20307 1.19385 1.24322 0.96800 0.97900 0.97293 1.77273 1.24402 0.97245 1.15211 0.87946 0.92850 0.93683 0.89090 0.84634 0.75692 0.73188 0.86862 0.86866 0.94073 0.94066 0.97910 0.97908 0.92687 0.80460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 10.10 71.98 0.73 -0.98 16 2 C 0.13 1.20 7.24 86.38 0.63 1.83 16 3 N -0.37 -7.09 3.70 -347.00 -1.29 -8.38 16 4 C 0.04 0.66 11.52 83.50 0.96 1.62 16 5 C -0.02 -0.62 6.90 37.62 0.26 -0.36 16 6 N -0.63 -14.26 5.47 -304.04 -1.66 -15.93 16 7 C 0.51 16.05 7.80 87.66 0.68 16.73 16 8 O -0.57 -22.81 13.14 -3.10 -0.04 -22.85 16 9 C -0.12 -3.82 5.70 29.85 0.17 -3.65 16 10 C -0.08 -3.62 4.44 30.59 0.14 -3.48 16 11 C 0.03 1.34 4.97 29.85 0.15 1.49 16 12 C -0.55 -32.22 9.11 25.60 0.23 -31.99 16 13 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 14 C 0.00 0.18 5.46 84.65 0.46 0.64 16 15 N -0.93 -56.34 13.29 21.45 0.28 -56.05 16 16 Si 0.96 45.44 29.54 68.60 2.03 47.46 16 17 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 20 C 0.02 0.71 10.84 85.33 0.92 1.64 16 21 N -0.32 -9.12 12.41 -56.77 -0.70 -9.82 16 22 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 23 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.14 0.22 8.07 -2.39 -0.02 0.20 16 27 H 0.23 1.20 8.06 -2.91 -0.02 1.18 16 28 H 0.43 5.82 8.83 -92.71 -0.82 5.00 16 29 H 0.11 3.01 8.14 -2.38 -0.02 2.99 16 30 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 31 H 0.04 1.87 8.10 -2.39 -0.02 1.85 16 32 H 0.04 1.87 8.10 -2.39 -0.02 1.86 16 33 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 35 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 36 H 0.18 6.49 5.92 -2.91 -0.02 6.47 16 Total: -1.00 -79.23 311.20 4.20 -75.03 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 0.26 Total: 7.04 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 5.33 Total: -16.50 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -3.37 Total: -90.18 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.04 Total: -22.85 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -79.23 4.20 -75.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593965843.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.331 kcal (2) G-P(sol) polarization free energy of solvation -79.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds