Wall clock time and date at job start Mon Mar 30 2020 04:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 13 13 O 1.21282 * 119.99865 * 240.00203 * 12 2 1 14 14 N 1.34774 * 120.00164 * 59.99708 * 12 2 1 15 15 C 1.46496 * 120.00339 * 180.02562 * 14 12 2 16 16 H 1.09007 * 109.46916 * 325.00088 * 15 14 12 17 17 C 1.53002 * 109.47001 * 84.99506 * 15 14 12 18 18 C 1.52992 * 109.47445 * 204.99941 * 15 14 12 19 19 N 1.46502 * 109.46872 * 64.99957 * 18 15 14 20 20 C 1.34949 * 126.03684 * 125.00315 * 19 18 15 21 21 C 1.35317 * 107.74991 * 179.97438 * 20 19 18 22 22 C 1.39880 * 107.91425 * 0.02562 * 21 20 19 23 23 N 1.30835 * 108.20256 * 359.73770 * 22 21 20 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 28 28 H 0.97005 * 119.99795 * 359.97438 * 14 12 2 29 29 H 1.09002 * 109.46925 * 180.02562 * 17 15 14 30 30 H 1.08994 * 109.47420 * 300.00519 * 17 15 14 31 31 H 1.09007 * 109.46811 * 60.00518 * 17 15 14 32 32 H 1.09002 * 109.47437 * 184.99634 * 18 15 14 33 33 H 1.09001 * 109.47477 * 304.99815 * 18 15 14 34 34 H 1.08003 * 126.12500 * 359.97438 * 20 19 18 35 35 H 1.07992 * 126.04599 * 180.02562 * 21 20 19 36 36 H 1.07996 * 125.89670 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 6 2.0324 -0.7103 -1.2306 13 8 2.7296 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1946 -0.9406 -3.6508 16 1 3.1938 -1.3332 -3.4616 17 6 1.2501 -2.0943 -3.9944 18 6 2.2462 0.0424 -4.8221 19 7 3.2394 1.0826 -4.5431 20 6 4.2813 1.4176 -5.3325 21 6 4.9560 2.4193 -4.7221 22 6 4.3043 2.7058 -3.5181 23 7 3.2722 1.9087 -3.4123 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7096 1.1617 3.4844 28 1 1.1487 0.5386 -2.5436 29 1 1.6134 -2.6085 -4.8842 30 1 1.2133 -2.7945 -3.1600 31 1 0.2510 -1.7017 -4.1836 32 1 2.5238 -0.4904 -5.7316 33 1 1.2666 0.5015 -4.9546 34 1 4.5319 0.9670 -6.2815 35 1 5.8411 2.9107 -5.0981 36 1 4.5992 3.4584 -2.8019 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596791383.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:45 Heat of formation + Delta-G solvation = 34.679129 kcal Electronic energy + Delta-G solvation = -18660.071859 eV Core-core repulsion = 15760.013828 eV Total energy + Delta-G solvation = -2900.058031 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.02179 -38.83055 -35.80761 -33.61286 -32.41166 -30.86046 -29.87698 -29.44637 -26.30200 -25.04127 -23.05772 -21.39061 -20.95540 -20.37424 -19.22301 -17.28161 -16.37935 -15.87009 -15.66742 -14.67863 -14.41056 -14.14538 -14.03801 -13.63555 -13.15008 -12.86416 -12.72036 -12.55024 -12.29662 -12.13831 -11.80029 -11.37692 -11.08230 -10.93054 -10.64522 -10.60077 -10.45597 -10.13596 -9.87762 -9.31382 -8.86996 -8.52571 -8.48712 -8.30177 -8.20819 -5.94283 -3.96701 2.01342 2.58181 2.99824 3.38825 3.43969 3.51155 3.88157 3.93523 4.43953 4.55107 4.81031 4.82615 5.05161 5.19807 5.37376 5.40498 5.50770 5.64154 5.71779 5.83854 6.02103 6.08671 6.30731 6.44630 6.72450 6.76719 6.94229 7.04412 7.07605 7.23774 7.61183 7.85315 7.86736 8.09055 8.27360 8.59382 9.12034 9.40243 9.68288 11.13405 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.025538 B = 0.005945 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.148943 B = 4709.093451 C = 5222.185952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.031 3.969 3 H 0.053 0.947 4 C -0.497 4.497 5 H 0.072 0.928 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.527 3.473 13 O -0.554 6.554 14 N -0.728 5.728 15 C 0.131 3.869 16 H 0.086 0.914 17 C -0.160 4.160 18 C 0.126 3.874 19 N -0.371 5.371 20 C 0.044 3.956 21 C -0.276 4.276 22 C 0.038 3.962 23 N -0.268 5.268 24 H 0.092 0.908 25 H 0.029 0.971 26 H 0.011 0.989 27 H 0.259 0.741 28 H 0.398 0.602 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.169 0.831 35 H 0.143 0.857 36 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.926 2.011 -17.799 18.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.010 3.990 3 H 0.071 0.929 4 C -0.536 4.536 5 H 0.090 0.910 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.317 3.683 13 O -0.431 6.431 14 N -0.382 5.382 15 C 0.025 3.975 16 H 0.104 0.896 17 C -0.219 4.219 18 C 0.004 3.996 19 N -0.154 5.154 20 C -0.102 4.102 21 C -0.306 4.306 22 C -0.148 4.148 23 N -0.089 5.089 24 H 0.110 0.890 25 H 0.048 0.952 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.233 0.767 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.106 0.894 34 H 0.186 0.814 35 H 0.161 0.839 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 1.250 0.937 -16.883 16.955 hybrid contribution 0.834 0.237 0.166 0.883 sum 2.084 1.174 -16.716 16.887 Atomic orbital electron populations 1.21718 0.96757 0.99522 1.00811 1.18826 0.93936 0.96958 0.89303 0.92907 1.21156 1.30662 1.12645 0.89115 0.90969 1.24946 0.95223 0.95118 0.99023 1.69880 1.37291 1.23164 1.23342 0.86481 0.78427 0.80240 0.82221 1.20733 1.21347 1.19835 1.21862 0.78044 0.83924 0.84490 1.90506 1.38420 1.27337 1.86833 1.46155 1.55088 1.32158 1.04764 1.20999 0.99753 0.91634 0.85149 0.89629 1.22144 0.99272 0.98397 1.02128 1.22126 0.91473 0.87088 0.98951 1.48738 1.22194 1.28661 1.15786 1.22506 0.90759 0.98935 0.97976 1.21470 1.05801 1.04764 0.98550 1.23953 0.93928 0.99202 0.97745 1.77555 1.21797 1.05319 1.04246 0.88981 0.95220 0.97023 0.93088 0.76748 0.92171 0.91032 0.92297 0.87753 0.89386 0.81387 0.83921 0.80229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.87 37.16 0.33 -2.79 16 2 C 0.03 0.81 2.64 -92.92 -0.25 0.56 16 3 H 0.05 1.47 8.14 -51.93 -0.42 1.04 16 4 C -0.50 -14.67 8.37 -34.44 -0.29 -14.96 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -26.00 11.32 55.43 0.63 -25.38 16 8 Si 0.90 22.49 29.54 -169.99 -5.02 17.47 16 9 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.27 -6.88 7.11 56.52 0.40 -6.47 16 12 C 0.53 12.55 7.11 -10.98 -0.08 12.47 16 13 O -0.55 -14.99 15.12 5.56 0.08 -14.91 16 14 N -0.73 -13.29 3.94 -53.81 -0.21 -13.50 16 15 C 0.13 1.91 2.79 -67.94 -0.19 1.72 16 16 H 0.09 1.49 7.58 -51.93 -0.39 1.10 16 17 C -0.16 -1.99 9.48 37.16 0.35 -1.64 16 18 C 0.13 1.34 6.04 -4.04 -0.02 1.32 16 19 N -0.37 -4.93 3.68 -61.37 -0.23 -5.16 16 20 C 0.04 0.49 11.45 -17.22 -0.20 0.29 16 21 C -0.28 -3.27 10.80 -40.01 -0.43 -3.70 16 22 C 0.04 0.54 12.03 -17.36 -0.21 0.34 16 23 N -0.27 -4.40 11.34 30.63 0.35 -4.05 16 24 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.40 6.82 7.87 -40.82 -0.32 6.50 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.73 8.07 -51.93 -0.42 0.31 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.17 1.18 8.06 -52.48 -0.42 0.76 16 35 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.18 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 306.38 15.07 4.62 4.62 Total: -1.00 -34.67 306.38 -6.00 -40.67 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.14 Total: 5.08 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -1.08 Total: -4.84 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.54 Total: -48.08 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: 0.08 Total: -14.91 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.67 -6.00 -40.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596791383.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.345 kcal (2) G-P(sol) polarization free energy of solvation -34.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds